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5MM2
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BU of 5mm2 by Molmil
nora virus structure
Descriptor: Capsid protein VP4A, capsid protein VP4B, capsid protein VP4C
Authors:Laurinmaki, P, Shakeel, S, Ekstrom, J.-O, Butcher, S.J.
Deposit date:2016-12-08
Release date:2017-12-20
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Structure of Nora virus at 2.7 angstrom resolution and implications for receptor binding, capsid stability and taxonomy.
Sci Rep, 10, 2020
7ZFR
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BU of 7zfr by Molmil
Crystal structure of HLA-DP (DPA1*02:01-DPB1*01:01) in complex with a peptide bound in the reverse direction
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MHC class II HLA-DP alpha chain (DPA1*02:01), MHC class II HLA-DP beta chain (DPB1*01:01), ...
Authors:Racle, J, Guillaume, P, Larabi, A, Lau, K, Pojer, F, Gfeller, D.
Deposit date:2022-04-01
Release date:2023-04-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes.
Immunity, 56, 2023
7ZAK
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BU of 7zak by Molmil
Crystal structure of HLA-DP (DPA1*02:01-DPB1*01:01) in complex with a peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, MAGNESIUM ION, ...
Authors:Racle, J, Guillaume, P, Larabi, A, Lau, K, Pojer, F, Gfeller, D.
Deposit date:2022-03-22
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes.
Immunity, 56, 2023
4GAG
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BU of 4gag by Molmil
Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 412-423)
Descriptor: GLYCEROL, Genome polyprotein, NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN, ...
Authors:Potter, J.A, Owsianka, A, Angus, A.G.N, Jeffery, N, Matthews, D, Keck, Z, Lau, P, Foung, S.K.H, Taylor, G.L, Patel, A.H.
Deposit date:2012-07-25
Release date:2012-10-10
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Toward a Hepatitis C Virus Vaccine: the Structural Basis of Hepatitis C Virus Neutralization by AP33, a Broadly Neutralizing Antibody.
J.Virol., 86, 2012
4GAY
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BU of 4gay by Molmil
Structure of the broadly neutralizing antibody AP33
Descriptor: NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN, NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN, TRIETHYLENE GLYCOL
Authors:Potter, J.A, Owsianka, A, Jeffery, N, Matthews, D, Keck, Z, Lau, P, Foung, S.K.H, Taylor, G.L, Patel, A.H.
Deposit date:2012-07-26
Release date:2012-10-10
Last modified:2012-11-21
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Toward a Hepatitis C Virus Vaccine: the Structural Basis of Hepatitis C Virus Neutralization by AP33, a Broadly Neutralizing Antibody.
J.Virol., 86, 2012
8KD0
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BU of 8kd0 by Molmil
Crystal structure of SAR11_0769 from 'Candidatus Pelagibacter ubique' HTCC1062 bound to a co-purified ligand, beta-galactopyranose
Descriptor: Probable binding protein component of ABC sugar transporter, beta-D-galactopyranose
Authors:Clifton, B.E, Laurino, P.
Deposit date:2023-08-08
Release date:2024-07-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.675 Å)
Cite:The ultra-high affinity transport proteins of ubiquitous marine bacteria.
Nature, 634, 2024
8WCH
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BU of 8wch by Molmil
Crystal structure of SAR11_0655 bound to a co-purified ligand, L-pyroglutamate
Descriptor: PYROGLUTAMIC ACID, Probable Leu/Ile/Val-binding protein, SODIUM ION
Authors:Clifton, B.E, Laurino, P.
Deposit date:2023-09-12
Release date:2024-07-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.519 Å)
Cite:The ultra-high affinity transport proteins of ubiquitous marine bacteria.
Nature, 634, 2024
8X2V
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BU of 8x2v by Molmil
Crystal structure of the ancestral GH19 chitinase, Anc4+LoopII (P12K/N13H mutant)
Descriptor: GH19 chitinase
Authors:Kozome, D, Laurino, P.
Deposit date:2023-11-10
Release date:2024-04-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Remote loop evolution reveals a complex biological function for chitinase enzymes beyond the active site.
Nat Commun, 15, 2024
8X2W
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BU of 8x2w by Molmil
Crystal structure of the ancestral GH19 chitinase, Anc4+LoopII (P12K/N13H/S58T/N193G/Y194F/D197R)
Descriptor: the ancestral GH19 chitinase, Anc4+LoopII (P12K/N13H/S58T/N193G/Y194F/D197R)
Authors:Kozome, D, Laurino, P.
Deposit date:2023-11-10
Release date:2024-04-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Remote loop evolution reveals a complex biological function for chitinase enzymes beyond the active site.
Nat Commun, 15, 2024
8HNE
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BU of 8hne by Molmil
Crystal structure of the ancestral GH19 chitinase Anc4
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Anc4, ...
Authors:Kozome, D, Laurino, P.
Deposit date:2022-12-07
Release date:2023-12-13
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Remote loop evolution reveals a complex biological function for chitinase enzymes beyond the active site.
Nat Commun, 15, 2024
8HNF
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BU of 8hnf by Molmil
Crystal structure of the ancestral GH19 chitinase Anc5
Descriptor: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Anc5, ...
Authors:Kozome, D, Laurino, P.
Deposit date:2022-12-07
Release date:2023-12-13
Last modified:2024-09-04
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Remote loop evolution reveals a complex biological function for chitinase enzymes beyond the active site.
Nat Commun, 15, 2024
8HQQ
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BU of 8hqq by Molmil
Crystal structure of the glucose-binding protein SAR11_0769 from "Candidatus Pelagibacter ubique" HTCC1062 bound to glucose
Descriptor: Probable binding protein component of ABC sugar transporter, beta-D-glucopyranose
Authors:Clifton, B.E, Laurino, P.
Deposit date:2022-12-14
Release date:2023-12-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:The ultra-high affinity transport proteins of ubiquitous marine bacteria.
Nature, 634, 2024
8HQR
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BU of 8hqr by Molmil
Crystal structure of the arginine-/lysine-binding protein SAR11_1210 from 'Candidatus Pelagibacter ubique' HTCC1062 bound to arginine
Descriptor: ABC transporter, ARGININE
Authors:Clifton, B.E, Laurino, P.
Deposit date:2022-12-14
Release date:2023-12-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:The ultra-high affinity transport proteins of ubiquitous marine bacteria.
Nature, 634, 2024
3J2J
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BU of 3j2j by Molmil
Empty coxsackievirus A9 capsid
Descriptor: Protein VP1, Protein VP2, Protein VP3
Authors:Shakeel, S, Seitsonen, J.J.T, Kajander, T, Laurinmaki, P, Hyypia, T, Susi, P, Butcher, S.J.
Deposit date:2012-10-04
Release date:2013-07-17
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9.54 Å)
Cite:Structural and functional analysis of coxsackievirus A9 integrin {alpha}v{beta}6 binding and uncoating.
J.Virol., 87, 2013
6EI2
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BU of 6ei2 by Molmil
Crystal Structure of HLA-A68 presenting a C-terminally extended peptide
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, CADMIUM ION, ...
Authors:Picaud, S, Guillaume, P, Pike, A.C.W, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Gfeller, D, Filippakopoulos, P.
Deposit date:2017-09-16
Release date:2017-10-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Crystal Structure of HLA-A68 presenting a C-terminally extended peptide
To Be Published
6WFS
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BU of 6wfs by Molmil
Cryo-EM Structure of Hepatitis B virus T=4 capsid in complex with the antiviral molecule DBT1
Descriptor: 11-oxo-N-[2-(4-sulfamoylphenyl)ethyl]-10,11-dihydrodibenzo[b,f][1,4]thiazepine-8-carboxamide, Capsid protein
Authors:Schlicksup, C, Laughlin, P, Dunkelbarger, S, Wang, J.C, Zlotnick, A.
Deposit date:2020-04-03
Release date:2020-06-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Local Stabilization of Subunit-Subunit Contacts Causes Global Destabilization of Hepatitis B Virus Capsids.
Acs Chem.Biol., 15, 2020
5HQ3
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BU of 5hq3 by Molmil
Stable, high-expression variant of human acetylcholinesterase
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Acetylcholinesterase, O-ETHYLMETHYLPHOSPHONIC ACID ESTER GROUP
Authors:Goldenzweig, A, Goldsmith, M, Hill, S.E, Gertman, O, Laurino, P, Ashani, Y, Dym, O, Albeck, S, Unger, T, Prilusky, J, Lieberman, R.L, Aharoni, A, Silman, I, Sussman, J.L, Tawfik, D.S, Fleishman, S.J.
Deposit date:2016-01-21
Release date:2016-07-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Automated Structure- and Sequence-Based Design of Proteins for High Bacterial Expression and Stability.
Mol.Cell, 63, 2016
4BRH
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BU of 4brh by Molmil
Legionella pneumophila NTPDase1 crystal form II (closed) in complex with MG AND THIAMINE PHOSPHOVANADATE
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, DECAVANADATE, ...
Authors:Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
Deposit date:2013-06-04
Release date:2013-07-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystallographic snapshots along the reaction pathway of nucleoside triphosphate diphosphohydrolases.
Structure, 21, 2013
3VC0
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BU of 3vc0 by Molmil
Crystal structure of Taipoxin beta subunit isoform 1
Descriptor: Phospholipase A2 homolog, taipoxin beta chain
Authors:Cendron, L, Micetic, I, Polverino de Laureto, P, Beltramini, M, Paoli, M.
Deposit date:2012-01-03
Release date:2012-07-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural analysis of trimeric phospholipase A(2) neurotoxin from the Australian taipan snake venom.
Febs J., 279, 2012
7LOO
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BU of 7loo by Molmil
S-adenosyl methionine transferase cocrystallized with ATP
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Jackson, C.J, Tan, L.L, Laurino, P.
Deposit date:2021-02-10
Release date:2021-09-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Substrate Dynamics Contribute to Enzymatic Specificity in Human and Bacterial Methionine Adenosyltransferases.
Jacs Au, 1, 2021
7XQM
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BU of 7xqm by Molmil
InDel-mutant short chain Dehydrogenase bound to SAH
Descriptor: Dehydrogenase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Toledo-Patino, S, Laurino, P.
Deposit date:2022-05-08
Release date:2022-12-21
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Insertions and deletions mediated functional divergence of Rossmann fold enzymes.
Proc.Natl.Acad.Sci.USA, 119, 2022
7XQN
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BU of 7xqn by Molmil
InDel-mutant malate dehydrogenase from E. coli
Descriptor: Malate dehydrogenase
Authors:Toledo-Patino, S, Laurino, P.
Deposit date:2022-05-08
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Insertions and deletions mediated functional divergence of Rossmann fold enzymes.
Proc.Natl.Acad.Sci.USA, 119, 2022
4BRG
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BU of 4brg by Molmil
Legionella pneumophila NTPDase1 crystal form II (closed) in complex with MG GMPPNP
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, ...
Authors:Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
Deposit date:2013-06-04
Release date:2013-07-17
Last modified:2013-12-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRF
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BU of 4brf by Molmil
Legionella pneumophila NTPDase1 crystal form II (closed) in complex with a distorted orthomolybdate ion and AMP
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ...
Authors:Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
Deposit date:2013-06-04
Release date:2013-07-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BR7
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BU of 4br7 by Molmil
Legionella pneumophila NTPDase1 crystal form I, open, AMPNP complex
Descriptor: 5'-O-[(R)-hydroxy(phosphonoamino)phosphoryl]adenosine, CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, ...
Authors:Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
Deposit date:2013-06-04
Release date:2013-07-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013

 

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