Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5WPL
DownloadVisualize
BU of 5wpl by Molmil
KRas G12V, bound to GppNHp and miniprotein 225-11
Descriptor: CALCIUM ION, GTPase HRas, MAGNESIUM ION, ...
Authors:Lee, S.-J, Shim, S.Y, McGee, J.H, Verdine, G.L.
Deposit date:2017-08-05
Release date:2018-01-03
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Exceptionally high-affinity Ras binders that remodel its effector domain.
J. Biol. Chem., 293, 2018
5WLB
DownloadVisualize
BU of 5wlb by Molmil
KRas G12V, bound to GppNHp and miniprotein 225-15a/b
Descriptor: 225-15 a, 225-15 b, GTPase KRas, ...
Authors:Shim, S.Y, McGee, J.H, Lee, S.-J, Verdine, G.L.
Deposit date:2017-07-26
Release date:2018-01-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Exceptionally high-affinity Ras binders that remodel its effector domain.
J. Biol. Chem., 293, 2018
3QPH
DownloadVisualize
BU of 3qph by Molmil
The three-dimensional structure of TrmB, a global transcriptional regulator of the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose
Descriptor: ACETATE ION, GLYCEROL, TrmB, ...
Authors:Krug, M, Lee, S.-J, Boos, W, Welte, W, Diederichs, K.
Deposit date:2011-02-13
Release date:2012-05-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.992 Å)
Cite:The three-dimensional structure of TrmB, a transcriptional regulator of dual function in the hyperthermophilic archaeon Pyrococcus furiosus in complex with sucrose.
Protein Sci., 22, 2013
6W13
DownloadVisualize
BU of 6w13 by Molmil
Human 8-oxoguanine glycosylase interrogating fully intrahelical oxoG lesion DNA
Descriptor: 2-(2-ethoxyethoxy)ethanethiol, ACETATE ION, DNA (5'-D(P*AP*CP*CP*TP*GP*G)-3'), ...
Authors:Shigdel, U, Verdine, G.
Deposit date:2020-03-03
Release date:2020-09-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun, 11, 2020
6W0M
DownloadVisualize
BU of 6w0m by Molmil
Human 8-oxoguanine glycosylase crosslinked with oxoG lesion containing DNA
Descriptor: 2-(2-ethoxyethoxy)ethanethiol, DNA (5'-D(P*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*C)-3'), DNA (5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'), ...
Authors:Shigdel, U, Verdine, G.
Deposit date:2020-03-02
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun, 11, 2020
6W0R
DownloadVisualize
BU of 6w0r by Molmil
Human 8-oxoguanine glycosylase interrogating fully intrahelical undamaged DNA
Descriptor: 2-(2-ethoxyethoxy)ethanethiol, DNA (5'-D(P*CP*AP*GP*GP*TP*C)-3'), DNA (5'-D(P*CP*CP*TP*GP*G)-3'), ...
Authors:Shigdel, U, Verdine, G.
Deposit date:2020-03-02
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The trajectory of intrahelical lesion recognition and extrusion by the human 8-oxoguanine DNA glycosylase.
Nat Commun, 11, 2020
5YCL
DownloadVisualize
BU of 5ycl by Molmil
Crystal structure of HigBA complex from Shigella flexneri
Descriptor: Antitoxin HigA, mRNA interferase HigB
Authors:Youn, W.S, Seok, S.H, Seo, M.D.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2019-09-04
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Structural changes of antitoxin HigA from Shigella flexneri by binding of its cognate toxin HigB.
Int.J.Biol.Macromol., 130, 2019
6IRP
DownloadVisualize
BU of 6irp by Molmil
Crystal structure of HigA from Shigella flexneri
Descriptor: Antitoxin HigA
Authors:Yoon, W.S, Seok, S.H, Seo, M.D.
Deposit date:2018-11-14
Release date:2019-09-04
Method:X-RAY DIFFRACTION (1.954 Å)
Cite:Structural changes of antitoxin HigA from Shigella flexneri by binding of its cognate toxin HigB.
Int.J.Biol.Macromol., 130, 2019
2DH6
DownloadVisualize
BU of 2dh6 by Molmil
Crystal structure of E. coli Apo-TrpB
Descriptor: SULFATE ION, tryptophan synthase beta subunit
Authors:Nishio, K, Morimoto, Y, Ogasahara, K, Yasuoka, N, Yutani, K, Tsukihara, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-23
Release date:2007-04-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Large conformational changes in the Escherichia coli tryptophan synthase beta(2) subunit upon pyridoxal 5'-phosphate binding
Febs J., 277, 2010
2DH5
DownloadVisualize
BU of 2dh5 by Molmil
Crystal structure of E. coli Holo-TrpB
Descriptor: GLYCEROL, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, ...
Authors:Nishio, K, Morimoto, Y, Ogasahara, K, Yutani, K, Tsukihara, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-23
Release date:2007-04-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Large conformational changes in the Escherichia coli tryptophan synthase beta(2) subunit upon pyridoxal 5'-phosphate binding
Febs J., 277, 2010
1NZN
DownloadVisualize
BU of 1nzn by Molmil
Cytosolic domain of the human mitchondrial fission protein Fis1 adopts a TPR fold
Descriptor: Fission protein Fis1p, GLYCEROL, SULFATE ION
Authors:Gittis, A.G, Dohm, J.A, Hill, R.B.
Deposit date:2003-02-18
Release date:2004-03-02
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cytosolic domain of the human mitchondrial fission protein Fis1 adopts a TPR fold
Proteins, 54, 2004
7VT9
DownloadVisualize
BU of 7vt9 by Molmil
CRYSTAL STRUCTURE AT 3.4 ANGSTROMS RESOLUTION OF Maltodextrin glucosidase, MalZ, FROM Escherichia coli
Descriptor: Maltodextrin glucosidase
Authors:Ahn, W.-C, Ahn, Y, Woo, E.-J.
Deposit date:2021-10-28
Release date:2022-10-26
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Dimeric architecture of maltodextrin glucosidase (MalZ) provides insights into the substrate recognition and hydrolysis mechanism.
Biochem.Biophys.Res.Commun., 586, 2022
7M78
DownloadVisualize
BU of 7m78 by Molmil
Room Temperature XFEL Crystallography reveals asymmetry in the vicinity of the two phylloquinones in Photosystem I
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Keable, S.M, Simon, P.S, Kolsch, A, Kern, J, Yachandra, V.K, Zouni, A, Yano, J.
Deposit date:2021-03-26
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Room temperature XFEL crystallography reveals asymmetry in the vicinity of the two phylloquinones in photosystem I.
Sci Rep, 11, 2021
7M75
DownloadVisualize
BU of 7m75 by Molmil
Room Temperature XFEL Crystallography reveals asymmetry in the vicinity of the two phylloquinones in Photosystem I
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Keable, S.M, Simon, P.S, Kolsch, A, Kern, J, Yachandra, V.K, Zouni, A, Yano, J.
Deposit date:2021-03-26
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Room temperature XFEL crystallography reveals asymmetry in the vicinity of the two phylloquinones in photosystem I.
Sci Rep, 11, 2021
7M76
DownloadVisualize
BU of 7m76 by Molmil
Room Temperature XFEL Crystallography reveals asymmetry in the vicinity of the two phylloquinones in Photosystem I
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Keable, S.M, Simon, P.S, Kolsch, A, Kern, J, Yachandra, V.K, Zouni, A, Yano, J.
Deposit date:2021-03-26
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Room temperature XFEL crystallography reveals asymmetry in the vicinity of the two phylloquinones in photosystem I.
Sci Rep, 11, 2021
2RJ2
DownloadVisualize
BU of 2rj2 by Molmil
Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
Descriptor: CHLORIDE ION, F-box only protein 2, NICKEL (II) ION
Authors:Vaijayanthimala, S, Velmurugan, D, Mizushima, T, Yamane, T, Yoshida, Y, Tanaka, K.
Deposit date:2007-10-14
Release date:2008-10-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
6M93
DownloadVisualize
BU of 6m93 by Molmil
Monophosphorylated pSer33 b-Catenin peptide, b-TrCP/Skp1, NRX-1933 ternary complex
Descriptor: 2-oxo-N-[3-(1H-tetrazol-5-yl)phenyl]-6-(trifluoromethyl)-1,2-dihydropyridine-3-carboxamide, Catenin beta-1, F-box/WD repeat-containing protein 1A, ...
Authors:Simonetta, K.R, Clifton, M.C, Walter, R.L, Ranieri, G.M, Lee, S.J.
Deposit date:2018-08-22
Release date:2019-04-03
Last modified:2019-04-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Prospective discovery of small molecule enhancers of an E3 ligase-substrate interaction.
Nat Commun, 10, 2019
6M92
DownloadVisualize
BU of 6m92 by Molmil
Monophosphorylated pSer33 b-Catenin peptide, b-TrCP/Skp1, NRX-2663 ternary complex
Descriptor: 3-{[2-oxo-4-phenoxy-6-(trifluoromethyl)-1,2-dihydropyridine-3-carbonyl]amino}benzoic acid, Catenin beta-1, F-box/WD repeat-containing protein 1A, ...
Authors:Simonetta, K.R, Clifton, M.C, Walter, R.L, Ranieri, G.M, Carter, J.J, Lee, S.J.
Deposit date:2018-08-22
Release date:2019-04-03
Last modified:2020-01-15
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Prospective discovery of small molecule enhancers of an E3 ligase-substrate interaction.
Nat Commun, 10, 2019
2DZU
DownloadVisualize
BU of 2dzu by Molmil
Structure of mutant tryptophan synthase alpha-subunit (D110N) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZS
DownloadVisualize
BU of 2dzs by Molmil
Structure of mutant tryptophan synthase alpha-subunit (E103A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZW
DownloadVisualize
BU of 2dzw by Molmil
Structure of mutant tryptophan synthase alpha-subunit (E244A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2E09
DownloadVisualize
BU of 2e09 by Molmil
Structure of mutant tryptophan synthase alpha-subunit (E74A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-02
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZP
DownloadVisualize
BU of 2dzp by Molmil
Structure of mutant tryptophan synthase alpha-subunit (D17N) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZX
DownloadVisualize
BU of 2dzx by Molmil
Structure of mutant tryptophan synthase alpha-subunit (E131-132A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZV
DownloadVisualize
BU of 2dzv by Molmil
Structure of mutant tryptophan synthase alpha-subunit (D146A) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published

221051

数据于2024-06-12公开中

PDB statisticsPDBj update infoContact PDBjnumon