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Crystal Structure of Inhibitor JNJ-49153390 in Complex with Prefusion RSV F Glycoprotein
Descriptor:	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3-[[5-bromanyl-1-(3-methylsulfonylpropyl)benzimidazol-2-yl]methyl]-1-cyclopropyl-imidazo[4,5-c]pyridin-2-one, Fusion glycoprotein F0, ...
Authors:	Battles, M.B, McLellan, J.S, Arnoult, E, Roymans, D, Langedijk, J.P.
Deposit date:	2015-10-15
Release date:	2015-12-09
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Molecular mechanism of respiratory syncytial virus fusion inhibitors. Nat.Chem.Biol., 12, 2016

5EA3

Crystal Structure of Inhibitor JNJ-2408068 in Complex with Prefusion RSV F Glycoprotein
Descriptor:	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 2-[[2-[[1-(2-azanylethyl)piperidin-4-yl]amino]-4-methyl-benzimidazol-1-yl]methyl]-6-methyl-pyridin-3-ol, Fusion glycoprotein F0, ...
Authors:	Battles, M.B, McLellan, J.S, Arnoult, E, Langedijk, J.P, Roymans, D.
Deposit date:	2015-10-15
Release date:	2015-12-09
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.75 Å)
Cite:	Molecular mechanism of respiratory syncytial virus fusion inhibitors. Nat.Chem.Biol., 12, 2016

5XF7

Crystal structure of human protein disulfide isomerase-like protein of the testis
Descriptor:	Protein disulfide-isomerase-like protein of the testis
Authors:	Li, H, Li, J, Liu, Y, Liang, H.
Deposit date:	2017-04-08
Release date:	2017-12-13
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.381 Å)
Cite:	Crystal and solution structures of human protein-disulfide isomerase-like protein of the testis (PDILT) provide insight into its chaperone activity J. Biol. Chem., 293, 2018

6IVE

Molecular structure of a thermostable and a Zinc ion binding gamma-class carbonic anhydrase
Descriptor:	Ferripyochelin-binding protein, PHOSPHATE ION, ZINC ION
Authors:	Wang, W.M, Wang, H.F.
Deposit date:	2018-12-03
Release date:	2019-04-03
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Molecular structure of thermostable and zinc-ion-binding gamma-class carbonic anhydrases. Biometals, 32, 2019

8IOS

Structure of the SARS-CoV-2 XBB.1 spike glycoprotein (closed-1 state)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
Deposit date:	2023-03-13
Release date:	2023-05-24
Last modified:	2023-07-19
Method:	ELECTRON MICROSCOPY (2.5 Å)
Cite:	Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun, 14, 2023

8IOU

Structure of SARS-CoV-2 XBB.1 spike glycoprotein in complex with ACE2 (1-up state)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:	Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
Deposit date:	2023-03-13
Release date:	2023-05-24
Last modified:	2023-07-19
Method:	ELECTRON MICROSCOPY (3.18 Å)
Cite:	Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun, 14, 2023

8IOV

Structure of SARS-CoV-2 XBB.1 spike RBD in complex with ACE2
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ...
Authors:	Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
Deposit date:	2023-03-13
Release date:	2023-05-24
Last modified:	2023-07-19
Method:	ELECTRON MICROSCOPY (3.29 Å)
Cite:	Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun, 14, 2023

8IOT

Structure of the SARS-CoV-2 XBB.1 spike glycoprotein (closed-2 state)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Anraku, Y, Kita, S, Yajima, H, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
Deposit date:	2023-03-13
Release date:	2023-05-24
Last modified:	2023-07-19
Method:	ELECTRON MICROSCOPY (2.51 Å)
Cite:	Virological characteristics of the SARS-CoV-2 XBB variant derived from recombination of two Omicron subvariants. Nat Commun, 14, 2023

7JMN

Tail module of Mediator complex
Descriptor:	MED15, Mediator of RNA polymerase II transcription subunit 14, Mediator of RNA polymerase II transcription subunit 16, ...
Authors:	Zhang, H.Q, Chen, D.C.
Deposit date:	2020-08-02
Release date:	2021-03-03
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (3.58 Å)
Cite:	Mediator structure and conformation change. Mol.Cell, 81, 2021

6IPZ

Fyn SH3 domain R96W mutant, crystallized with 18-crown-6
Descriptor:	1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Tyrosine-protein kinase Fyn
Authors:	Arold, S.T, Aljedani, S.S, Shahul Hameed, U.F.
Deposit date:	2018-11-05
Release date:	2018-11-28
Last modified:	2023-11-22
Method:	X-RAY DIFFRACTION (1.576 Å)
Cite:	Synergy and allostery in ligand binding by HIV-1 Nef. Biochem.J., 478, 2021

7YOT

Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Descriptor:	NDV P protein, RNA-directed RNA polymerase L
Authors:	Chen, Y, Jingyuan, C.
Deposit date:	2022-08-02
Release date:	2023-02-15
Last modified:	2023-08-30
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023

7YOU

Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Descriptor:	NDV P protein, RNA-directed RNA polymerase L
Authors:	Chen, Y, Jingyuan, C, Xiaoying, F.
Deposit date:	2022-08-02
Release date:	2023-02-15
Last modified:	2023-08-30
Method:	ELECTRON MICROSCOPY (3.41 Å)
Cite:	Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023

7YOV

Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus
Descriptor:	NDV P protein, RNA-directed RNA polymerase L
Authors:	Chen, Y, Jingyuan, C, Xiaoying, F.
Deposit date:	2022-08-02
Release date:	2023-02-15
Last modified:	2023-08-30
Method:	ELECTRON MICROSCOPY (3.25 Å)
Cite:	Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023

7KLZ

Structure of SPOP MATH domain in complex with a Geminin peptide
Descriptor:	Geminin peptide, PHOSPHATE ION, Speckle-type POZ protein
Authors:	Cui, G, Botuyan, M.V, Mer, G.
Deposit date:	2020-11-01
Release date:	2021-08-18
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (3.4 Å)
Cite:	SPOP mutation induces replication over-firing by impairing Geminin ubiquitination and triggers replication catastrophe upon ATR inhibition. Nat Commun, 12, 2021

6VFE

Gasdermin D pore
Descriptor:	Gasdermin-D, N-terminal
Authors:	Xia, S, Ruan, J, Wu, H.
Deposit date:	2020-01-03
Release date:	2021-04-21
Last modified:	2024-05-29
Method:	ELECTRON MICROSCOPY (3.9 Å)
Cite:	Gasdermin D pore structure reveals preferential release of mature interleukin-1. Nature, 593, 2021

8GYB

Crystal structure of Alongshan virus methyltransferase bound to S-adenosyl-L-homocysteine
Descriptor:	Methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:	Chen, H, Lin, S, Lu, G.W.
Deposit date:	2022-09-22
Release date:	2023-09-27
Last modified:	2024-04-10
Method:	X-RAY DIFFRACTION (2.101 Å)
Cite:	Structural and functional basis of low-affinity SAM/SAH-binding in the conserved MTase of the multi-segmented Alongshan virus distantly related to canonical unsegmented flaviviruses. Plos Pathog., 19, 2023

8GYA

Crystal structure of Alongshan virus methyltransferase bound to Sinefungin
Descriptor:	Methyltransferase, SINEFUNGIN
Authors:	Chen, H, Lin, S, Lu, G.W.
Deposit date:	2022-09-21
Release date:	2023-09-27
Last modified:	2024-04-10
Method:	X-RAY DIFFRACTION (2.005 Å)
Cite:	Structural and functional basis of low-affinity SAM/SAH-binding in the conserved MTase of the multi-segmented Alongshan virus distantly related to canonical unsegmented flaviviruses. Plos Pathog., 19, 2023

5ZHG

Human group C rotavirus VP8*s recognize type A histo-blood group antigens as ligands
Descriptor:	Outer capsid protein VP8*
Authors:	Sun, X, Duan, Z.
Deposit date:	2018-03-13
Release date:	2018-04-11
Last modified:	2024-03-27
Method:	X-RAY DIFFRACTION (1.799 Å)
Cite:	*Human Group C Rotavirus VP8s Recognize Type A Histo-Blood Group Antigens as Ligands.** J. Virol., 92, 2018

6WJ0

Crystal structure of Fab 54-4H03
Descriptor:	Fab 54-4H03 heavy chain, Fab 54-4H03 light chain, GLYCEROL
Authors:	Wu, N.C, Wilson, I.A.
Deposit date:	2020-04-11
Release date:	2020-07-01
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (1.802 Å)
Cite:	Convergent Evolution in Breadth of Two VH6-1-Encoded Influenza Antibody Clonotypes from a Single Donor. Cell Host Microbe, 28, 2020

3RER

Crystal structure of E. coli Hfq in complex with AU6A RNA and ADP
Descriptor:	5'-R(APUPUPUPUPUPUPA)-3', ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:	Wang, W.W, Wu, J.H, Shi, Y.Y.
Deposit date:	2011-04-05
Release date:	2011-10-19
Last modified:	2023-11-01
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Cooperation of Escherichia coli Hfq hexamers in DsrA binding. Genes Dev., 25, 2011

6WJ1

Crystal structure of Fab 54-4H03 bound to H1 influenza hemagglutinin
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 54-4H03 heavy chain, ...
Authors:	Wu, N.C, Wilson, I.A.
Deposit date:	2020-04-11
Release date:	2020-07-01
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (3.503 Å)
Cite:	Convergent Evolution in Breadth of Two VH6-1-Encoded Influenza Antibody Clonotypes from a Single Donor. Cell Host Microbe, 28, 2020

6X3Y

Human cyclophilin A bound to a series of acylcic and macrocyclic inhibitors
Descriptor:	Peptidyl-prolyl cis-trans isomerase A, tert-butyl [(2S)-1-{[(3S,17S)-2,16-dioxo-10,15-dioxa-1,21-diazatricyclo[15.3.1.1~5,9~]docosa-5(22),6,8-trien-3-yl]amino}-3-methyl-1-oxobutan-2-yl]carbamate
Authors:	Appleby, T.C, Paulsen, J.L, Schmitz, U, Shivakumar, D.
Deposit date:	2020-05-21
Release date:	2020-06-24
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Evaluation of Free Energy Calculations for the Prioritization of Macrocycle Synthesis. J.Chem.Inf.Model., 60, 2020

6X4N

Human cyclophilin A bound to a series of acylcic and macrocyclic inhibitors: (2R,5S,11S,14S,18E)-2,11,17,17-tetramethyl-14-(propan-2-yl)-3-oxa-9,12,15,26,29-pentaazatetracyclo[18.5.3.1~5,9~.0~23,27~]nonacosa-1(25),18,20(28),21,23,26-hexaene-4,10,13,16-tetrone (compound 24)
Descriptor:	(2R,5S,11S,14S,18E)-2,11,17,17-tetramethyl-14-(propan-2-yl)-3-oxa-9,12,15,26,29-pentaazatetracyclo[18.5.3.1~5,9~.0~23,27~]nonacosa-1(25),18,20(28),21,23,26-hexaene-4,10,13,16-tetrone, Peptidyl-prolyl cis-trans isomerase A
Authors:	Appleby, T.C, Paulsen, J.L, Schmitz, U, Shivakumar, D.
Deposit date:	2020-05-22
Release date:	2020-06-24
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (1.51 Å)
Cite:	Evaluation of Free Energy Calculations for the Prioritization of Macrocycle Synthesis. J.Chem.Inf.Model., 60, 2020

8JYM

Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 2)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Yajima, H, Anraku, Y, Kita, S, Kimura, K, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
Deposit date:	2023-07-03
Release date:	2024-01-03
Method:	ELECTRON MICROSCOPY (2.79 Å)
Cite:	Virological characteristics of the SARS-CoV-2 XBB.1.5 variant To Be Published

8JYK

Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 1)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:	Yajima, H, Anraku, Y, Kita, S, Kimura, K, Sasaki, J, Sasaki-Tabata, K, Maenaka, K, Hashiguchi, T.
Deposit date:	2023-07-03
Release date:	2024-01-03
Method:	ELECTRON MICROSCOPY (2.59 Å)
Cite:	Virological characteristics of the SARS-CoV-2 XBB.1.5 variant To Be Published

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