Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7P4L
DownloadVisualize
BU of 7p4l by Molmil
Crystal structure of the trimeric ectodomain of archaeal Fusexin1 (Fsx1)
Descriptor: CALCIUM ION, CHLORIDE ION, Fusexin1, ...
Authors:Nishio, S, Tunyasuvunakool, K, Jumper, J, De Sanctis, D, Jovine, L.
Deposit date:2021-07-12
Release date:2022-07-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins.
Nat Commun, 13, 2022
8RKI
DownloadVisualize
BU of 8rki by Molmil
Molecular basis of ZP3/ZP1 heteropolymerization: crystal structure of a native vertebrate egg coat filament fragment
Descriptor: Choriogenin H, YTTERBIUM (III) ION, Zona pellucida sperm-binding protein 3, ...
Authors:Wiseman, B, Zamora-Caballero, S, de Sanctis, D, Yasumasu, S, Jovine, L.
Deposit date:2023-12-25
Release date:2024-03-13
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat.
Cell, 187, 2024
9FUP
DownloadVisualize
BU of 9fup by Molmil
Serial microseconds crystallography at ID29 using fixed-target (small foils): A2a adenosine receptor co-crystallised with Istradefylline
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 8-[(~{E})-2-(3,4-dimethoxyphenyl)ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione, ...
Authors:Orlans, J, Rose, S.L, Ferguson, G, Lebon, G, Basu, S, de Sanctis, D.
Deposit date:2024-06-26
Release date:2025-01-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
9FUE
DownloadVisualize
BU of 9fue by Molmil
Serial microseconds crystallography at ID29 using fixed-target (Si Chip): Lysozyme - with ligand GlcNAc
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme C, ...
Authors:Orlans, J, Rose, S.L, Basu, S, de Sanctis, D.
Deposit date:2024-06-26
Release date:2025-01-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
8RKG
DownloadVisualize
BU of 8rkg by Molmil
Crystal structure of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BICINE, ...
Authors:Nishio, S, de Sanctis, D, Jovine, L.
Deposit date:2023-12-25
Release date:2024-03-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:ZP2 cleavage blocks polyspermy by modulating the architecture of the egg coat.
Cell, 187, 2024
8PVZ
DownloadVisualize
BU of 8pvz by Molmil
Manganese-dependent transcriptional repressor DR2539 complexed with cadmium
Descriptor: CADMIUM ION, Iron dependent repressor, putative
Authors:Mota, C, De Sanctis, D.
Deposit date:2023-07-18
Release date:2024-05-08
Last modified:2025-02-19
Method:X-RAY DIFFRACTION (2 Å)
Cite:Metal ion activation and DNA recognition by the Deinococcus radiodurans manganese sensor DR2539.
Febs J., 291, 2024
9FTV
DownloadVisualize
BU of 9ftv by Molmil
Serial microseconds crystallography at ID29 using MPI extruder: Thaumatin
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Orlans, J, Rose, S.L, Basu, S, de Sanctis, D.
Deposit date:2024-06-25
Release date:2025-01-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
9FTX
DownloadVisualize
BU of 9ftx by Molmil
Serial microseconds crystallography at ID29 using fixed-target (small foils): Proteinase K with 10 um spacing between X-ray pulses
Descriptor: CALCIUM ION, NITRATE ION, Proteinase K
Authors:Orlans, J, Rose, S.L, Basu, S, de Sanctis, D.
Deposit date:2024-06-25
Release date:2025-01-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
9FU1
DownloadVisualize
BU of 9fu1 by Molmil
Serial microseconds crystallography at ID29 using fixed-target (large foils): Proteinase K with 50 um spacing between X-ray pulses
Descriptor: CALCIUM ION, NITRATE ION, Proteinase K
Authors:Orlans, J, Rose, S.L, Basu, S, de Sanctis, D.
Deposit date:2024-06-25
Release date:2025-01-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
9FTY
DownloadVisualize
BU of 9fty by Molmil
Serial microseconds crystallography at ID29 using fixed-target (small foils): Proteinase K with 20 um spacing between X-ray pulses
Descriptor: CALCIUM ION, NITRATE ION, Proteinase K
Authors:Orlans, J, Rose, S.L, Basu, S, de Sanctis, D.
Deposit date:2024-06-25
Release date:2025-01-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
9FTS
DownloadVisualize
BU of 9fts by Molmil
Serial microseconds crystallography at ID29 using SACLA extruder: Thaumatin
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Orlans, J, Rose, S.L, Basu, S, de Sanctis, D.
Deposit date:2024-06-25
Release date:2025-01-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
9FTU
DownloadVisualize
BU of 9ftu by Molmil
Serial microseconds crystallography at ID29 using ASU extruder: Thaumatin
Descriptor: L(+)-TARTARIC ACID, Thaumatin I
Authors:Orlans, J, Rose, S.L, Basu, S, de Sanctis, D.
Deposit date:2024-06-25
Release date:2025-01-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
9FUD
DownloadVisualize
BU of 9fud by Molmil
Serial microseconds crystallography at ID29 using fixed-target (Si Chip): Lysozyme - without ligand GlcNAc (apo)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Orlans, J, Rose, S.L, Basu, S, de Sanctis, D.
Deposit date:2024-06-26
Release date:2025-01-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Advancing macromolecular structure determination with microsecond X-ray pulses at a 4th generation synchrotron.
Commun Chem, 8, 2025
5CSB
DownloadVisualize
BU of 5csb by Molmil
The crystal structure of beta2-microglobulin D76N mutant at room temperature
Descriptor: Beta-2-microglobulin
Authors:de Rosa, M, Mota, C.S, de Sanctis, D, Bolognesi, M, Ricagno, S.
Deposit date:2015-07-23
Release date:2016-08-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.719 Å)
Cite:Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity.
Nat Commun, 9, 2018
5CS7
DownloadVisualize
BU of 5cs7 by Molmil
The crystal structure of wt beta2-microglobulin at room temperature
Descriptor: Beta-2-microglobulin
Authors:de Rosa, M, Mota, C.S, de Sanctis, D, Bolognesi, M, Ricagno, S.
Deposit date:2015-07-23
Release date:2016-08-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conformational dynamics in crystals reveal the molecular bases for D76N beta-2 microglobulin aggregation propensity.
Nat Commun, 9, 2018
5B5K
DownloadVisualize
BU of 5b5k by Molmil
Crystal structure of Izumo1, the mammalian sperm ligand for egg Juno
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Izumo sperm-egg fusion protein 1
Authors:Nishimura, K, Han, L, De Sanctis, D, Jovine, L.
Deposit date:2016-05-11
Release date:2016-07-06
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of sperm Izumo1 reveals unexpected similarities with Plasmodium invasion proteins.
Curr.Biol., 26, 2016
8PVT
DownloadVisualize
BU of 8pvt by Molmil
Manganese-dependent transcriptional repressor DR2539 complexed with cadmium (SAD 7 keV)
Descriptor: CADMIUM ION, Iron dependent repressor, putative
Authors:Mota, C, De Sanctis, D.
Deposit date:2023-07-18
Release date:2024-05-08
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Metal ion activation and DNA recognition by the Deinococcus radiodurans manganese sensor DR2539.
Febs J., 291, 2024
8PW0
DownloadVisualize
BU of 8pw0 by Molmil
Manganese-dependent transcriptional repressor DR2539 complexed with manganese and bound to dr1709 promotor
Descriptor: DNA (5'-D(*TP*AP*TP*TP*TP*TP*AP*GP*GP*CP*GP*CP*GP*AP*CP*TP*AP*AP*AP*AP*T)-3'), GLYCEROL, Iron dependent repressor, ...
Authors:Mota, C, De Sanctis, D.
Deposit date:2023-07-18
Release date:2024-05-08
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Metal ion activation and DNA recognition by the Deinococcus radiodurans manganese sensor DR2539.
Febs J., 291, 2024
5KOR
DownloadVisualize
BU of 5kor by Molmil
Arabidopsis thaliana fucosyltransferase 1 (FUT1) in complex with GDP and a xylo-oligossacharide
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Rocha, J, de Sanctis, D, Breton, C.
Deposit date:2016-07-01
Release date:2016-10-12
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Arabidopsis thaliana FUT1 Reveals a Variant of the GT-B Class Fold and Provides Insight into Xyloglucan Fucosylation.
Plant Cell, 28, 2016
5A44
DownloadVisualize
BU of 5a44 by Molmil
Structure of Bacteriorhodopsin obtained from 20um crystals by multi crystal data collection
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, BACTERIORHODOPSIN, HEPTANE, ...
Authors:Zander, U, Bourenkov, G, Popov, A.N, de Sanctis, D, McCarthy, A.A, Svensson, O, Round, E.S, Gordeliy, V.I, Mueller-Dieckmann, C, Leonard, G.A.
Deposit date:2015-06-05
Release date:2015-11-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Meshandcollect: An Automated Multi-Crystal Data-Collection Workflow for Synchrotron Macromolecular Crystallography Beamlines.
Acta Crystallogr.,Sect.D, 71, 2015
5KOP
DownloadVisualize
BU of 5kop by Molmil
Arabidopsis thaliana fucosyltransferase 1 (FUT1) in its apo-form
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Galactoside 2-alpha-L-fucosyltransferase
Authors:Rocha, J, de Sanctis, D, Breton, C.
Deposit date:2016-07-01
Release date:2016-10-12
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of Arabidopsis thaliana FUT1 Reveals a Variant of the GT-B Class Fold and Provides Insight into Xyloglucan Fucosylation.
Plant Cell, 28, 2016
6TKL
DownloadVisualize
BU of 6tkl by Molmil
Non-cleavable tsetse thrombin inhibitor in complex with human alpha-thrombin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Prothrombin, ...
Authors:Calisto, B.M, Ripoll-Rozada, J, de Sanctis, D, Pereira, P.J.B.
Deposit date:2019-11-28
Release date:2020-11-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Sulfotyrosine-Mediated Recognition of Human Thrombin by a Tsetse Fly Anticoagulant Mimics Physiological Substrates.
Cell Chem Biol, 28, 2021
6TKI
DownloadVisualize
BU of 6tki by Molmil
Tsetse thrombin inhibitor in complex with human alpha-thrombin - tetragonal form at 12.7keV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, SODIUM ION, Thrombin heavy chain, ...
Authors:Calisto, B.M, Ripoll-Rozada, J, de Sanctis, D, Pereira, P.J.B.
Deposit date:2019-11-28
Release date:2020-11-04
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Sulfotyrosine-Mediated Recognition of Human Thrombin by a Tsetse Fly Anticoagulant Mimics Physiological Substrates.
Cell Chem Biol, 28, 2021
6TKG
DownloadVisualize
BU of 6tkg by Molmil
Tsetse thrombin inhibitor in complex with human alpha-thrombin - orthorhombic form at 12keV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Prothrombin, ...
Authors:Calisto, B.M, Ripoll-Rozada, J, de Sanctis, D, Pereira, P.J.B.
Deposit date:2019-11-28
Release date:2020-11-04
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Sulfotyrosine-Mediated Recognition of Human Thrombin by a Tsetse Fly Anticoagulant Mimics Physiological Substrates.
Cell Chem Biol, 28, 2021
6TKJ
DownloadVisualize
BU of 6tkj by Molmil
Tsetse thrombin inhibitor in complex with human alpha-thrombin - tetragonal form at 7keV
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Thrombin heavy chain, Thrombin light chain, ...
Authors:Calisto, B.M, Ripoll-Rozada, J, de Sanctis, D, Pereira, P.J.B.
Deposit date:2019-11-28
Release date:2020-11-04
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Sulfotyrosine-Mediated Recognition of Human Thrombin by a Tsetse Fly Anticoagulant Mimics Physiological Substrates.
Cell Chem Biol, 28, 2021

238895

数据于2025-07-16公开中

PDB statisticsPDBj update infoContact PDBjnumon