Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1IQC
DownloadVisualize
BU of 1iqc by Molmil
Crystal structure of Di-Heme Peroxidase from Nitrosomonas europaea
Descriptor: CALCIUM ION, GLYCEROL, HEME C, ...
Authors:Shimizu, H.
Deposit date:2001-07-20
Release date:2002-01-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Nitrosomonas europaea cytochrome c peroxidase and the structural basis for ligand switching in bacterial di-heme peroxidases
Biochemistry, 40, 2001
8XI6
DownloadVisualize
BU of 8xi6 by Molmil
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ishimaru, H, Nishimura, M, Shigematsu, H, Marini, M.I, Hasegawa, N, Takamiya, R, Iwata, S, Mori, Y.
Deposit date:2023-12-19
Release date:2024-04-24
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Epitopes of an antibody that neutralizes a wide range of SARS-CoV-2 variants in a conserved subdomain 1 of the spike protein.
J.Virol., 98, 2024
8JQ5
DownloadVisualize
BU of 8jq5 by Molmil
Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with D-allulose
Descriptor: D-psicose, L-rhamnose isomerase, MANGANESE (II) ION, ...
Authors:Yoshida, H, Yoshihara, A.
Deposit date:2023-06-13
Release date:2024-03-13
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
Appl.Microbiol.Biotechnol., 108, 2024
8JQ4
DownloadVisualize
BU of 8jq4 by Molmil
Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with L-rhamnose
Descriptor: L-rhamnose isomerase, MANGANESE (II) ION, alpha-L-rhamnopyranose, ...
Authors:Yoshida, H, Yoshihara, A.
Deposit date:2023-06-13
Release date:2024-03-13
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
Appl.Microbiol.Biotechnol., 108, 2024
8JQ6
DownloadVisualize
BU of 8jq6 by Molmil
Crystal structure of Lactobacillus rhamnosus L-rhamnose isomerase in complex with D-allose
Descriptor: L-rhamnose isomerase, MANGANESE (II) ION, alpha-D-allopyranose, ...
Authors:Yoshida, H, Yoshihara, A.
Deposit date:2023-06-13
Release date:2024-03-13
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
Appl.Microbiol.Biotechnol., 108, 2024
8JQ3
DownloadVisualize
BU of 8jq3 by Molmil
Crystal structure of L-rhamnose isomerase from Lactobacillus rhamnosus
Descriptor: L-rhamnose isomerase, MANGANESE (II) ION
Authors:Yoshida, H, Yoshihara, A.
Deposit date:2023-06-13
Release date:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
Appl.Microbiol.Biotechnol., 108, 2024
1IV1
DownloadVisualize
BU of 1iv1 by Molmil
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Authors:Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-11
Release date:2002-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
3VKM
DownloadVisualize
BU of 3vkm by Molmil
Protease-resistant mutant form of Human Galectin-8 in complex with sialyllactose and lactose
Descriptor: 1,2-ETHANEDIOL, Galectin-8, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ...
Authors:Yoshida, H, Yamashita, S, Teraoka, M, Nakakita, S, Nishi, N, Kamitori, S.
Deposit date:2011-11-18
Release date:2012-09-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:X-ray structure of a protease-resistant mutant form of human galectin-8 with two carbohydrate recognition domains
Febs J., 279, 2012
1IV3
DownloadVisualize
BU of 1iv3 by Molmil
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form MG atoms)
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, MAGNESIUM ION
Authors:Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-11
Release date:2002-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
1IV2
DownloadVisualize
BU of 1iv2 by Molmil
Structure of 2C-Methyl-D-erythritol-2,4-cyclodiphosphate Synthase (bound form CDP)
Descriptor: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Kishida, H, Wada, T, Unzai, S, Kuzuyama, T, Terada, T, Sirouzu, M, Yokoyama, S, Tame, J.R.H, Park, S.-Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-11
Release date:2002-09-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure and catalytic mechanism of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MECDP) synthase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis.
Acta Crystallogr.,Sect.D, 59, 2003
3VRA
DownloadVisualize
BU of 3vra by Molmil
Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum with the specific inhibitor Atpenin A5
Descriptor: 3-[(2S,4S,5R)-5,6-DICHLORO-2,4-DIMETHYL-1-OXOHEXYL]-4-HYDROXY-5,6-DIMETHOXY-2(1H)-PYRIDINONE, Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Shimizu, H, Shiba, T, Inaoka, D.K, Osanai, A, Kita, K, Sakamoto, K, Harada, S.
Deposit date:2012-04-07
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.44 Å)
Cite:Crystal structure of mitochondrial quinol-fumarate reductase from parasitic nematode Ascaris suum
To be Published
3VR9
DownloadVisualize
BU of 3vr9 by Molmil
Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum with the specific inhibitor flutolanil
Descriptor: Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
Authors:Shimizu, H, Shiba, T, Inaoka, D.K, Osanai, A, Kita, K, Sakamoto, K, Harada, S.
Deposit date:2012-04-07
Release date:2013-04-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystal structure of mitochondrial quinol-fumarate reductase from parasitic nematode Ascaris suum
To be Published
3VSK
DownloadVisualize
BU of 3vsk by Molmil
Crystal structure of penicillin-binding protein 3 (PBP3) from methicilin-resistant Staphylococcus aureus in the apo form.
Descriptor: Penicillin-binding protein 3
Authors:Yoshida, H, Tame, J.R, Park, S.Y.
Deposit date:2012-04-25
Release date:2012-10-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Crystal Structures of Penicillin-Binding Protein 3 (PBP3) from Methicillin-Resistant Staphylococcus aureus in the Apo and Cefotaxime-Bound Forms.
J.Mol.Biol., 423, 2012
3VR8
DownloadVisualize
BU of 3vr8 by Molmil
Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum
Descriptor: 2-amino-3-methoxy-6-methyl-5-[(2E)-3-methylhex-2-en-1-yl]cyclohexa-2,5-diene-1,4-dione, Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Shimizu, H, Shiba, T, Inaoka, D.K, Osanai, A, Kita, K, Sakamoto, K, Harada, S.
Deposit date:2012-04-07
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystal structure of mitochondrial quinol-fumarate reductase from the parasitic nematode Ascaris suum
J.Biochem., 151, 2012
3VRB
DownloadVisualize
BU of 3vrb by Molmil
Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum with the specific inhibitor flutolanil and substrate fumarate
Descriptor: Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
Authors:Shimizu, H, Shiba, T, Inaoka, D.K, Osanai, A, Kita, K, Sakamoto, K, Harada, S.
Deposit date:2012-04-07
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structure of mitochondrial quinol-fumarate reductase from the parasitic nematode Ascaris suum
J.Biochem., 151, 2012
3G5S
DownloadVisualize
BU of 3g5s by Molmil
Crystal structure of Thermus thermophilus TrmFO in complex with glutathione
Descriptor: 1,2-ETHANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, GLUTATHIONE, ...
Authors:Nishimasu, H, Ishitani, R, Hori, H, Nureki, O.
Deposit date:2009-02-05
Release date:2009-05-19
Last modified:2011-12-14
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase
Proc.Natl.Acad.Sci.USA, 106, 2009
5J8L
DownloadVisualize
BU of 5j8l by Molmil
Crystal structure of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with 1-deoxy L-tagatose, using a crystal grown in microgravity
Descriptor: 1-deoxy-L-tagatose, 1-deoxy-beta-L-tagatopyranose, D-tagatose 3-epimerase, ...
Authors:Yoshida, H, Yoshihara, A, Izumori, K, Kamitori, S.
Deposit date:2016-04-08
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates
Appl. Microbiol. Biotechnol., 100, 2016
3G5Q
DownloadVisualize
BU of 3g5q by Molmil
Crystal structure of Thermus thermophilus TrmFO
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, FLAVIN-ADENINE DINUCLEOTIDE, Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
Authors:Nishimasu, H, Ishitani, R, Hori, H, Nureki, O.
Deposit date:2009-02-05
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase
Proc.Natl.Acad.Sci.USA, 106, 2009
3G5R
DownloadVisualize
BU of 3g5r by Molmil
Crystal structure of Thermus thermophilus TrmFO in complex with tetrahydrofolate
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Nishimasu, H, Ishitani, R, Hori, H, Nureki, O.
Deposit date:2009-02-05
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase
Proc.Natl.Acad.Sci.USA, 106, 2009
4Q0Q
DownloadVisualize
BU of 4q0q by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribulose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4Q0U
DownloadVisualize
BU of 4q0u by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex with L-ribose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4Q0S
DownloadVisualize
BU of 4q0s by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with ribitol
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), D-ribitol, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4Q0P
DownloadVisualize
BU of 4q0p by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4Q0V
DownloadVisualize
BU of 4q0v by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex with L-ribulose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4YTR
DownloadVisualize
BU of 4ytr by Molmil
Crystal structure of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with 1-deoxy L-tagatose
Descriptor: 1-deoxy-L-tagatose, 1-deoxy-beta-L-tagatopyranose, D-tagatose 3-epimerase, ...
Authors:Yoshida, H, Yoshihara, A, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2015-03-18
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates
Appl. Microbiol. Biotechnol., 100, 2016

222036

数据于2024-07-03公开中

PDB statisticsPDBj update infoContact PDBjnumon