Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8EFV
DownloadVisualize
BU of 8efv by Molmil
Structure of single homo-hexameric Holliday junction ATP-dependent DNA helicase RuvB motor
Descriptor: 49-mer DNA, 51-mer DNA, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Shen, Z.F, Rish, A.D, Fu, T.M.
Deposit date:2022-09-09
Release date:2023-05-10
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structure of single homo-hexameric Holliday junction ATP-dependent DNA helicase RuvB motor
To Be Published
8EFY
DownloadVisualize
BU of 8efy by Molmil
Structure of double homo-hexameric AAA+ ATPase RuvB motors
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Holliday junction ATP-dependent DNA helicase RuvB, MAGNESIUM ION, ...
Authors:Shen, Z.F, Rish, A.D, Fu, T.M.
Deposit date:2022-09-10
Release date:2023-05-10
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Structure of double homo-hexameric AAA+ ATPase RuvB motor binding with DNA substrate
To Be Published
8SP3
DownloadVisualize
BU of 8sp3 by Molmil
Asymmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid
Descriptor: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-05-01
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SPO
DownloadVisualize
BU of 8spo by Molmil
Tetramerized activation of MapSPARTA bound with NAD+
Descriptor: MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain-containing protein, ...
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-05-03
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SP0
DownloadVisualize
BU of 8sp0 by Molmil
Symmetric dimer of MapSPARTA bound with gRNA/tDNA hybrid
Descriptor: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-05-01
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SQU
DownloadVisualize
BU of 8squ by Molmil
Monomeric MapSPARTA bound with guide RNA and target DNA hybrid
Descriptor: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-05-04
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8SUB
DownloadVisualize
BU of 8sub by Molmil
E. coli SIR2-HerA complex (dodecamer SIR2 pentamer HerA)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ...
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-05-11
Release date:2023-12-27
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
8SXX
DownloadVisualize
BU of 8sxx by Molmil
E. coli dodecamer SIR2
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SIR2-like domain-containing protein
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-05-24
Release date:2023-12-27
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
8SUX
DownloadVisualize
BU of 8sux by Molmil
Structure of E. coli PtuA hexamer
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, PtuA
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-05-13
Release date:2024-01-10
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense.
Nat.Struct.Mol.Biol., 31, 2024
8SU9
DownloadVisualize
BU of 8su9 by Molmil
E. coli SIR2-HerA complex (hexamer HerA bound with dodecamer Sir2)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ...
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-05-11
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
8SUW
DownloadVisualize
BU of 8suw by Molmil
E. coli SIR2-HerA complex (dodecamer SIR2 bound 4 protomers of HerA)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside triphosphate hydrolase, ...
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-05-13
Release date:2024-03-27
Method:ELECTRON MICROSCOPY (3.15 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
8TJY
DownloadVisualize
BU of 8tjy by Molmil
Structure of Gabija AB complex
Descriptor: Endonuclease GajA, Gabija protein GajB
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-07-24
Release date:2024-04-24
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Molecular basis of Gabija anti-phage supramolecular assemblies.
Nat.Struct.Mol.Biol., 31, 2024
8TK0
DownloadVisualize
BU of 8tk0 by Molmil
Structure of Gabija AB complex
Descriptor: Endonuclease GajA
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-07-24
Release date:2024-04-24
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Molecular basis of Gabija anti-phage supramolecular assemblies.
Nat.Struct.Mol.Biol., 31, 2024
8TK1
DownloadVisualize
BU of 8tk1 by Molmil
Structure of Gabija AB complex 1
Descriptor: Endonuclease GajA, Gabija protein GajB
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2023-07-25
Release date:2024-04-24
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Molecular basis of Gabija anti-phage supramolecular assemblies.
Nat.Struct.Mol.Biol., 31, 2024
8UAE
DownloadVisualize
BU of 8uae by Molmil
E. coli Sir2_HerA complex (12:6) with ATPgamaS
Descriptor: MAGNESIUM ION, Nucleoside triphosphate hydrolase, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-09-20
Release date:2023-12-27
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
9BGK
DownloadVisualize
BU of 9bgk by Molmil
Structure of V.cholera DdmDE (2D:1E) in complex with DNA
Descriptor: DdmE, Helicase/UvrB N-terminal domain-containing protein, MAGNESIUM ION, ...
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2024-04-19
Release date:2024-10-23
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
Cell, 187, 2024
9C6Q
DownloadVisualize
BU of 9c6q by Molmil
Structure of V. cholerae monomeric DdmD bound with ssDNA
Descriptor: Helicase/UvrB N-terminal domain-containing protein, ssDNA
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2024-06-08
Release date:2024-08-21
Last modified:2024-10-02
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
Cell, 187, 2024
9BF1
DownloadVisualize
BU of 9bf1 by Molmil
Structure of apo-state V. cholerae DdmD
Descriptor: Helicase/UvrB N-terminal domain-containing protein
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2024-04-16
Release date:2024-08-21
Last modified:2024-10-02
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
Cell, 187, 2024
9BF5
DownloadVisualize
BU of 9bf5 by Molmil
Structure of V. cholerae DdmD in complex with ssDNA
Descriptor: Helicase/UvrB N-terminal domain-containing protein, ssDNA1, ssDNA2
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2024-04-16
Release date:2024-09-04
Last modified:2024-10-02
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
Cell, 187, 2024
8UAF
DownloadVisualize
BU of 8uaf by Molmil
E. coli Sir2_HerA complex (12:6) bound with NAD+
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Shen, Z.F, Lin, Q.P, Fu, T.M.
Deposit date:2023-09-20
Release date:2023-12-27
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Assembly-mediated activation of the SIR2-HerA supramolecular complex for anti-phage defense.
Mol.Cell, 83, 2023
8EE7
DownloadVisualize
BU of 8ee7 by Molmil
Structure of focused PtuA(dimer) and PtuB(monomer) complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, PtuA, PtuB
Authors:Shen, Z.F, Fu, T.M.
Deposit date:2022-09-06
Release date:2024-01-03
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense.
Nat.Struct.Mol.Biol., 31, 2024
8EE4
DownloadVisualize
BU of 8ee4 by Molmil
Structure of PtuA
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, PtuA
Authors:Shen, Z.F, Fu, T.M.
Deposit date:2022-09-06
Release date:2024-01-03
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense.
Nat.Struct.Mol.Biol., 31, 2024
8EEA
DownloadVisualize
BU of 8eea by Molmil
Structure of E.coli Septu (PtuAB) complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, PtuA, PtuB
Authors:Shen, Z.F, Fu, T.M.
Deposit date:2022-09-06
Release date:2023-12-27
Last modified:2024-04-03
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:PtuA and PtuB assemble into an inflammasome-like oligomer for anti-phage defense.
Nat.Struct.Mol.Biol., 31, 2024
8FEX
DownloadVisualize
BU of 8fex by Molmil
Inactivate state of Maribacter polysiphoniae Argonuate (short pAgo system)
Descriptor: TIR-APAZ, short pAgo
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2022-12-06
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023
8FFI
DownloadVisualize
BU of 8ffi by Molmil
Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding
Descriptor: MAGNESIUM ION, TIR-APAZ, guide RNA, ...
Authors:Shen, Z.F, Yang, X.Y, Fu, T.M.
Deposit date:2022-12-08
Release date:2023-08-23
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Oligomerization-mediated activation of a short prokaryotic Argonaute.
Nature, 621, 2023

227111

건을2024-11-06부터공개중

PDB statisticsPDBj update infoContact PDBjnumon