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1JWD
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BU of 1jwd by Molmil
Ca2+-induced Structural Changes in Calcyclin: High-resolution Solution Structure of Ca2+-bound Calcyclin.
Descriptor: Calcyclin
Authors:Maler, L, Sastry, M, Chazin, W.J.
Deposit date:2001-09-04
Release date:2002-03-27
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A structural basis for S100 protein specificity derived from comparative analysis of apo and Ca(2+)-calcyclin
J.Mol.Biol., 317, 2002
3GFL
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BU of 3gfl by Molmil
Crystal structure of the ST1710 mutant (R90A) protein
Descriptor: 146aa long hypothetical transcriptional regulator, CALCIUM ION
Authors:Kumarevel, T, Tanaka, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-02-27
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
7W3O
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BU of 7w3o by Molmil
Crystal structure of human CYB5R3
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3 soluble form
Authors:Noda, N.N.
Deposit date:2021-11-25
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
7W3N
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BU of 7w3n by Molmil
Crystal structure of Ufm1 fused to UFBP1 UFIM
Descriptor: UFBP1 peptide,Ubiquitin-fold modifier 1
Authors:Noda, N.N.
Deposit date:2021-11-25
Release date:2022-12-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
7BWK
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BU of 7bwk by Molmil
Structure of DotL(656-783)-IcmS-IcmW-LvgA-VpdB(461-590) derived from Legionella pneumophila
Descriptor: Hypothetical virulence protein, IcmO (DotL), IcmS, ...
Authors:Kim, H, Kwak, M.J, Oh, B.H.
Deposit date:2020-04-14
Release date:2020-06-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Structural basis for effector protein recognition by the Dot/Icm Type IVB coupling protein complex.
Nat Commun, 11, 2020
7WBK
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BU of 7wbk by Molmil
Crystal structure of Legionella pneumophila effector protein Lpg0081
Descriptor: Lpg0081, SULFATE ION
Authors:Lee, J, Kim, H, Oh, B.H.
Deposit date:2021-12-16
Release date:2022-06-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Reversible modification of mitochondrial ADP/ATP translocases by paired Legionella effector proteins.
Proc.Natl.Acad.Sci.USA, 119, 2022
7WBM
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BU of 7wbm by Molmil
Crystal structure of Legionella pneumophila effector protein Lpg0081
Descriptor: Lpg0081, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Lee, J, Kim, H, Oh, B.H.
Deposit date:2021-12-17
Release date:2022-06-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Reversible modification of mitochondrial ADP/ATP translocases by paired Legionella effector proteins.
Proc.Natl.Acad.Sci.USA, 119, 2022
3GFJ
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BU of 3gfj by Molmil
Crystal structure of the ST1710 mutant (R89A) protein
Descriptor: 146aa long hypothetical transcriptional regulator, CALCIUM ION
Authors:Kumarevel, T, Tanaka, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-02-27
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
3GFM
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BU of 3gfm by Molmil
Crystal structure of the ST1710 mutant (K91A) protein
Descriptor: 146aa long hypothetical transcriptional regulator, CALCIUM ION
Authors:Kumarevel, T, Tanaka, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2009-02-27
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:ST1710-DNA complex crystal structure reveals the DNA binding mechanism of the MarR family of regulators.
Nucleic Acids Res., 37, 2009
1V7R
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BU of 1v7r by Molmil
Structure of nucleotide triphosphate pyrophosphatase from pyrococcus horikoshii OT3
Descriptor: CITRIC ACID, hypothetical protein PH1917
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-12-22
Release date:2003-12-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes.
J.Mol.Biol., 375, 2008
1WR8
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BU of 1wr8 by Molmil
Crystal structure of hypothetical protein PH1421 from Pyrococcus horikoshii.
Descriptor: ACETATE ION, Phosphoglycolate phosphatase
Authors:Yamamoto, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-13
Release date:2004-10-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of a haloacid dehalogenase superfamily phosphatase PH1421 from Pyrococcus horikoshii OT3: oligomeric state and thermoadaptation mechanism.
Acta Crystallogr.,Sect.D, 64, 2008
2DVO
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BU of 2dvo by Molmil
Structure of PH1917 protein with the complex of ITP from Pyrococcus horikoshii
Descriptor: Hypothetical protein PH1917, INOSINE 5'-TRIPHOSPHATE, SODIUM ION
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-31
Release date:2007-09-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes
J.Mol.Biol., 375, 2008
2DVP
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BU of 2dvp by Molmil
Structure of NTPase from Pyroccous horikoshii
Descriptor: Hypothetical protein PH1917
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-31
Release date:2007-09-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes
J.Mol.Biol., 375, 2008
2DDU
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BU of 2ddu by Molmil
Crystal structure of the third repeat domain of reelin
Descriptor: CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Nogi, T, Yasui, N, Takagi, J.
Deposit date:2006-02-03
Release date:2006-09-26
Last modified:2011-10-05
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structure of a signaling-competent reelin fragment revealed by X-ray crystallography and electron tomography
Embo J., 25, 2006
2EB7
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BU of 2eb7 by Molmil
Crystal structure of the hypothetical regulator from Sulfolobus tokodaii 7
Descriptor: 146aa long hypothetical transcriptional regulator
Authors:Kumarevel, T.S, Nishio, M, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-07
Release date:2007-11-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the MarR family regulatory protein, ST1710, from Sulfolobus tokodaii strain 7
J.Struct.Biol., 161, 2008
5B5G
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BU of 5b5g by Molmil
Crystal structure of ALiS4-Streptavidin complex
Descriptor: SULFITE ION, Streptavidin, methyl 5-(4-oxidanylidene-5~{H}-furo[3,2-c]pyridin-2-yl)pyridine-3-carboxylate
Authors:Sugiyama, S, Terai, T, Kakinouchi, K, Fujikake, R, Nagano, T, Urano, Y.
Deposit date:2016-05-04
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Improving the Solubility of Artificial Ligands of Streptavidin to Enable More Practical Reversible Switching of Protein Localization in Cells
Chembiochem, 18, 2017
5B5F
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BU of 5b5f by Molmil
Crystal structure of ALiS3-Streptavidin complex
Descriptor: N-methyl-3-(4-oxo-4,5-dihydrofuro[3,2-c]pyridin-2-yl)benzenesulfonamide, Streptavidin
Authors:Sugiyama, S, Terai, T, Kakinouchi, K, Fujikake, R, Nagano, T, Urano, Y.
Deposit date:2016-05-04
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Improving the Solubility of Artificial Ligands of Streptavidin to Enable More Practical Reversible Switching of Protein Localization in Cells
Chembiochem, 18, 2017
5B6F
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BU of 5b6f by Molmil
Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4
Descriptor: (5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-(2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, ...
Authors:Sugahara, M, Ago, H, Saino, H, Miyano, M.
Deposit date:2016-05-27
Release date:2017-05-31
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4
To Be Published
1BDD
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BU of 1bdd by Molmil
STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: STAPHYLOCOCCUS AUREUS PROTEIN A
Authors:Gouda, H, Torigoe, H, Saito, A, Sato, M, Arata, Y, Shimada, I.
Deposit date:1996-06-28
Release date:1997-01-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures.
Biochemistry, 31, 1992
1BDC
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BU of 1bdc by Molmil
STAPHYLOCOCCUS AUREUS PROTEIN A, IMMUNOGLOBULIN-BINDING B DOMAIN, NMR, 10 STRUCTURES
Descriptor: STAPHYLOCOCCUS AUREUS PROTEIN A
Authors:Gouda, H, Torigoe, H, Saito, A, Sato, M, Arata, Y, Shimada, I.
Deposit date:1996-06-28
Release date:1997-01-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures.
Biochemistry, 31, 1992
2DVN
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BU of 2dvn by Molmil
Structure of PH1917 protein with the complex of IMP from Pyrococcus horikoshii
Descriptor: GLYCEROL, Hypothetical protein PH1917, INOSINIC ACID, ...
Authors:Lokanath, N.K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-31
Release date:2007-09-04
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of dimeric nonstandard nucleotide triphosphate pyrophosphatase from Pyrococcus horikoshii OT3: functional significance of interprotomer conformational changes
J.Mol.Biol., 375, 2008
2ZM4
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BU of 2zm4 by Molmil
Crystal structure of imidazo quinoxaline 1 bound to the kinase domain of human LCK, activated form (auto-phosphorylated on TYR394)
Descriptor: DIMETHYL SULFOXIDE, N-(2-chloro-6-methylphenyl)-8-[(3S)-3-methylpiperazin-1-yl]imidazo[1,5-a]quinoxalin-4-amine, Proto-oncogene tyrosine-protein kinase LCK, ...
Authors:Tsuji, E.
Deposit date:2008-04-11
Release date:2008-10-14
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The importance of CH/pi hydrogen bonds in rational drug design: An ab initio fragment molecular orbital study to leukocyte-specific protein tyrosine (LCK) kinase
Bioorg.Med.Chem., 16, 2008
2ZYB
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BU of 2zyb by Molmil
Crystal structure of phenylimidazo pyrazin 2 bound to the kinase domain of human LCK, (auto-phosphorylated on TYR394)
Descriptor: N-(2,6-dimethylphenyl)-5-phenylimidazo[1,5-a]pyrazin-8-amine, Proto-oncogene tyrosine-protein kinase LCK, SULFATE ION
Authors:Tsuji, E.
Deposit date:2009-01-19
Release date:2009-02-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The importance of CH/pi hydrogen bonds in rational drug design: An ab initio fragment molecular orbital study to leukocyte-specific protein tyrosine (LCK) kinase
Bioorg.Med.Chem., 16, 2008
3A7D
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BU of 3a7d by Molmil
Crystal Structures of rat Catechol-O-Methyltransferase complexed with new bi-substrate type inhibitor
Descriptor: 5'-deoxy-5'-[4-({[(2,3-dihydroxy-5-nitrophenyl)carbonyl]amino}methyl)-1H-1,2,3-triazol-1-yl]adenosine, Catechol O-methyltransferase, MAGNESIUM ION, ...
Authors:Tsuji, E.
Deposit date:2009-09-26
Release date:2010-09-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Hit to Lead: Comprehensive Strategy of de novo Scaffold Generation by FBDD. Part 2: Ligand Fishing using Mass Spectrometry by Detection of Ligand-Protein Non-Covalent Complex after Matrix Click Chemistry
To be Published
3WF2
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BU of 3wf2 by Molmil
Crystal structure of human beta-galactosidase in complex with NBT-DGJ
Descriptor: (2R,3S,4R,5S)-N-butyl-3,4,5-trihydroxy-2-(hydroxymethyl)piperidine-1-carbothioamide, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Suzuki, H, Ohto, U, Shimizu, T.
Deposit date:2013-07-16
Release date:2014-04-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of pharmacological chaperoning for human beta-galactosidase
to be published

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