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6KD7
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BU of 6kd7 by Molmil
Crystal structure of geranylgeranyl pyrophosphate synthase
Descriptor: GLYCEROL, MAGNESIUM ION, PYROPHOSPHATE, ...
Authors:Kim, S, Kim, K.-J.
Deposit date:2019-07-01
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of geranylgeranyl pyrophosphate synthase (crtE) from Nonlabens dokdonensis DSW-6.
Biochem.Biophys.Res.Commun., 518, 2019
5C6F
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BU of 5c6f by Molmil
Crystal structures of ferritin mutants reveal side-on binding to diiron and end-on cleavage of oxygen
Descriptor: Bacterial non-heme ferritin, FE (III) ION, IMIDAZOLE
Authors:Kim, S, Kim, K.H, Seok, J.H, Park, Y.H, Jung, S.W, Chung, Y.B, Lee, D.B, Lee, J.H, Han, K.R, Cho, A.E, Lee, C, Chung, M.S.
Deposit date:2015-06-23
Release date:2016-07-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of Novel Iron-Uptake Route and Reaction Intermediates in Ferritins from Gram-Negative Bacteria.
J. Mol. Biol., 428, 2016
4JDY
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BU of 4jdy by Molmil
Crystal structure of Rv2606c
Descriptor: GLYCEROL, Pyridoxal biosynthesis lyase PdxS
Authors:Kim, S, Kim, K.-J.
Deposit date:2013-02-25
Release date:2013-05-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Mycobacterium tuberculosis Rv2606c: a pyridoxal biosynthesis lyase.
Biochem.Biophys.Res.Commun., 435, 2013
8IYI
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BU of 8iyi by Molmil
Spermidine synthase from Kluyveromyces lactis
Descriptor: KLLA0B09372p
Authors:Kim, S, Chang, J.H.
Deposit date:2023-04-05
Release date:2023-06-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Analysis of Spermidine Synthase from Kluyveromyces lactis.
Molecules, 28, 2023
5Y9D
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BU of 5y9d by Molmil
Crystal structure of acyl-coA oxidase1 from Yarrowia lipolytica
Descriptor: Acyl-coenzyme A oxidase 1, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Kim, S, Kim, K.-J.
Deposit date:2017-08-24
Release date:2018-01-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural insight into the substrate specificity of acyl-CoA oxidase1 from Yarrowia lipolytica for short-chain dicarboxylyl-CoAs.
Biochem. Biophys. Res. Commun., 495, 2018
4PRL
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BU of 4prl by Molmil
Crystal structure of D-lactate dehydrogenase with NAD+ from Lactobacillus jensenii
Descriptor: 4-phosphoerythronate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Kim, S, Kim, K.J.
Deposit date:2014-03-06
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure and thermodynamic properties of d-lactate dehydrogenase from Lactobacillus jensenii.
Int.J.Biol.Macromol., 68C, 2014
5YS9
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BU of 5ys9 by Molmil
Crystal structure of acyl-coA oxidase3 from Yarrowia lipolytica
Descriptor: Acyl-coenzyme A oxidase 3, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Kim, S, Kim, K.-J.
Deposit date:2017-11-13
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Acyl-CoA Oxidase 3 fromYarrowia lipolyticawith Specificity for Short-Chain Acyl-CoA.
J. Microbiol. Biotechnol., 28, 2018
4PRK
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BU of 4prk by Molmil
Crystal structure of D-lactate dehydrogenase (D-LDH) from Lactobacillus jensenii
Descriptor: 4-phosphoerythronate dehydrogenase
Authors:Kim, S, Kim, K.J.
Deposit date:2014-03-06
Release date:2014-06-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure and thermodynamic properties of d-lactate dehydrogenase from Lactobacillus jensenii.
Int.J.Biol.Macromol., 68C, 2014
7VG9
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BU of 7vg9 by Molmil
Crystal structure of phosphotransbutyrylase from Clostridium acetobutylicum
Descriptor: Phosphate butyryltransferase, SULFATE ION
Authors:Kim, S, Kim, K.-J.
Deposit date:2021-09-15
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Crystal structure and molecular mechanism of phosphotransbutyrylase from Clostridium acetobutylicum .
J Microbiol Biotechnol., 31, 2021
7YA4
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BU of 7ya4 by Molmil
Formate dehydrogenase from Novosphingobium sp. AP12 with NAD and Azide
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, AZIDE ION, ...
Authors:Kim, S, Kim, K.-J.
Deposit date:2022-06-27
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dual cofactor specific formate dehydrogenase from Novosphingobium sp. AP12 with high activity.
To Be Published
7YA3
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BU of 7ya3 by Molmil
Formate dehydrogenase from Novosphingobium sp. AP12 with NADP and Azide
Descriptor: AZIDE ION, Formate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kim, S, Kim, K.-J.
Deposit date:2022-06-27
Release date:2023-07-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Dual cofactor specific formate dehydrogenase from Novosphingobium sp. AP12 with high activity.
To Be Published
4YED
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BU of 4yed by Molmil
TcdA (CsdL)
Descriptor: ADENOSINE MONOPHOSPHATE, GLYCEROL, tRNA threonylcarbamoyladenosine dehydratase
Authors:Kim, S, Park, S.Y.
Deposit date:2015-02-24
Release date:2016-01-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Structure of Escherichia coli TcdA (Also Known As CsdL) Reveals a Novel Topology and Provides Insight into the tRNA Binding Surface Required for N(6)-Threonylcarbamoyladenosine Dehydratase Activity
J.Mol.Biol., 427, 2015
4LW4
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BU of 4lw4 by Molmil
Structural changes during cysteine desulfurase CsdA and sulfur-acceptor CsdE interactions provide insight into the trans-persulfuration
Descriptor: Cysteine desulfuration protein CsdE, Cysteine sulfinate desulfinase, PYRIDOXAL-5'-PHOSPHATE
Authors:Kim, S, Park, S.Y.
Deposit date:2013-07-26
Release date:2013-08-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural changes during cysteine desulfurase CsdA and sulfur acceptor CsdE interactions provide insight into the trans-persulfuration.
J.Biol.Chem., 288, 2013
4LW2
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BU of 4lw2 by Molmil
Structural changes during cysteine desulfurase CsdA and sulfur-acceptor CsdE interactions provide insight into the trans-persulfuration
Descriptor: Cysteine sulfinate desulfinase, GLYCEROL, PYRIDOXAL-5'-PHOSPHATE
Authors:Kim, S, Park, S.Y.
Deposit date:2013-07-26
Release date:2013-08-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural changes during cysteine desulfurase CsdA and sulfur acceptor CsdE interactions provide insight into the trans-persulfuration.
J.Biol.Chem., 288, 2013
1JE4
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BU of 1je4 by Molmil
Solution structure of the monomeric variant of the chemokine MIP-1beta
Descriptor: macrophage inflammatory protein 1-beta
Authors:Kim, S, Jao, S, Laurence, J.S, LiWang, P.J.
Deposit date:2001-06-15
Release date:2001-10-03
Last modified:2021-10-27
Method:SOLUTION NMR
Cite:Structural comparison of monomeric variants of the chemokine MIP-1beta having differing ability to bind the receptor CCR5.
Biochemistry, 40, 2001
7E43
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BU of 7e43 by Molmil
Structural insights into a bifunctional peptide methionine sulfoxide reductase MsrA/B fusion protein from Helicobacter pylori
Descriptor: ACETATE ION, Peptide methionine sulfoxide reductase MsrA/MsrB
Authors:Kim, S, Lee, K, Hwang, K.Y.
Deposit date:2021-02-10
Release date:2021-04-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights into a Bifunctional Peptide Methionine Sulfoxide Reductase MsrA/B Fusion Protein from Helicobacter pylori .
Antioxidants (Basel), 10, 2021
1RYU
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BU of 1ryu by Molmil
Solution Structure of the SWI1 ARID
Descriptor: SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1
Authors:Kim, S, Zhang, Z, Upchurch, S, Isern, N, Chen, Y.
Deposit date:2003-12-22
Release date:2004-05-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and DNA-binding sites of the SWI1 AT-rich interaction domain (ARID) suggest determinants for sequence-specific DNA recognition.
J.Biol.Chem., 279, 2004
7VID
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BU of 7vid by Molmil
The crystal structure of L-leucine dehydrogenase from Pseudomonas aeruginosa
Descriptor: GLYCEROL, Leucine dehydrogenase
Authors:Kim, S, Kang, W, Yang, J.K.
Deposit date:2021-09-26
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Crystal Structure of L-Leucine Dehydrogenase from Pseudomonas aeruginosa.
Mol.Cells, 45, 2022
3VL1
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BU of 3vl1 by Molmil
Crystal structure of yeast Rpn14
Descriptor: 26S proteasome regulatory subunit RPN14
Authors:Kim, S, Nishide, A, Saeki, Y, Takagi, K, Tanaka, K, Kato, K, Mizushima, T.
Deposit date:2011-11-28
Release date:2012-05-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:New crystal structure of the proteasome-dedicated chaperone Rpn14 at 1.6 A resolution
Acta Crystallogr.,Sect.F, 68, 2012
3OTP
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BU of 3otp by Molmil
Crystal structure of the DegP dodecamer with a model substrate
Descriptor: Lysozyme C, Protease do
Authors:Kim, S, Grant, R.A, Sauer, R.T.
Deposit date:2010-09-13
Release date:2011-01-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.76 Å)
Cite:Covalent Linkage of Distinct Substrate Degrons Controls Assembly and Disassembly of DegP Proteolytic Cages.
Cell(Cambridge,Mass.), 145, 2011
3ACP
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BU of 3acp by Molmil
Crystal Structure of Yeast Rpn14, a Chaperone of the 19S Regulatory Particle of the Proteasome
Descriptor: WD repeat-containing protein YGL004C
Authors:Kim, S, Saeki, Y, Suzuki, A, Takagi, K, Fukunaga, K, Yamane, T, Kato, K, Tanaka, K, Mizushima, T.
Deposit date:2010-01-08
Release date:2010-03-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of yeast Rpn14, a chaperone of the 19S regulatory particle of the proteasome
J.Biol.Chem., 285, 2010
1SJ0
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BU of 1sj0 by Molmil
Human Estrogen Receptor Alpha Ligand-binding Domain in Complex with the Antagonist Ligand 4-D
Descriptor: (2S,3R)-2-(4-(2-(PIPERIDIN-1-YL)ETHOXY)PHENYL)-2,3-DIHYDRO-3-(4-HYDROXYPHENYL)BENZO[B][1,4]OXATHIIN-6-OL, Estrogen receptor
Authors:Kim, S, Wu, J.Y, Birzin, E.T, Chan, W, Pai, L.Y, Yang, Y.T, Mosley, R.T, Fitzgerald, P.M, Sharma, N, DiNinno, F, Rohrer, S.P, Schaeffer, J.M, Hammond, M.L.
Deposit date:2004-03-02
Release date:2004-04-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Estrogen Receptor Ligands. II. Discovery of Benzoxathiins as Potent, Selective Estrogen Receptor alpha Modulators.
J.Med.Chem., 47, 2004
2QDF
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BU of 2qdf by Molmil
Structure of N-terminal domain of E. Coli YaeT
Descriptor: MAGNESIUM ION, Outer membrane protein assembly factor yaeT
Authors:Kim, S, Malinverni, J.C, Sliz, P, Silhavy, T.J, Harrison, S.C, Kahne, D.
Deposit date:2007-06-20
Release date:2007-09-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and function of an essential component of the outer membrane protein assembly machine.
Science, 317, 2007
2QCZ
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BU of 2qcz by Molmil
Structure of N-terminal domain of E. Coli YaeT
Descriptor: Outer membrane protein assembly factor yaeT
Authors:Kim, S, Malinverni, J.C, Sliz, P, Silhavy, T.J, Harrison, S.C, Kahne, D.
Deposit date:2007-06-20
Release date:2007-08-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure and function of an essential component of the outer membrane protein assembly machine.
Science, 317, 2007
7C11
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BU of 7c11 by Molmil
Formate--tetrahydrofolate ligase from Methylobacterium extorquens CM4 strain
Descriptor: ACETATE ION, CITRATE ANION, Formate-tetrahydrofolate ligase, ...
Authors:Kim, K.-J, Kim, S, Seo, H, Lee, S.
Deposit date:2020-05-02
Release date:2020-10-28
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.815 Å)
Cite:Biochemical properties and crystal structure of formate-tetrahydrofolate ligase from Methylobacterium extorquens CM4.
Biochem.Biophys.Res.Commun., 528, 2020

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