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2BJW
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BU of 2bjw by Molmil
PspF AAA domain
Descriptor: PSP OPERON TRANSCRIPTIONAL ACTIVATOR
Authors:Rappas, M, Schumacher, J, Beuron, F, Niwa, H, Bordes, P, Wigneshweraraj, S, Keetch, C.A, Robinson, C.V, Buck, M, Zhang, X.
Deposit date:2005-02-08
Release date:2005-03-31
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Insights Into the Activity of Enhancer-Binding Proteins
Science, 307, 2005
2BJV
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BU of 2bjv by Molmil
Crystal Structure of PspF(1-275) R168A mutant
Descriptor: PSP OPERON TRANSCRIPTIONAL ACTIVATOR
Authors:Rappas, M, Schumacher, J, Beuron, F, Niwa, H, Bordes, P, Wigneshweraraj, S, Keetch, C.A, Robinson, C.V, Buck, M, Zhang, X.
Deposit date:2005-02-08
Release date:2005-03-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insights Into the Activity of Enhancer-Binding Proteins
Science, 307, 2005
3HPN
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BU of 3hpn by Molmil
Ligand recognition by A-class EPH receptors: crystal structures of the EPHA2 ligand-binding domain and the EPHA2/EPHRIN-A1 complex
Descriptor: Ephrin type-A receptor 2
Authors:Himanen, J.P, Goldgur, Y, Miao, H, Myshkin, E, Guo, H, Buck, M, Nguyen, M, Rajashankar, K.R, Wang, B, Nikolov, D.B.
Deposit date:2009-06-04
Release date:2009-06-30
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex.
Embo Rep., 10, 2009
3HEI
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BU of 3hei by Molmil
Ligand Recognition by A-Class Eph Receptors: Crystal Structures of the EphA2 Ligand-Binding Domain and the EphA2/ephrin-A1 Complex
Descriptor: Ephrin type-A receptor 2, Ephrin-A1
Authors:Himanen, J.P, Goldgur, Y, Miao, H, Myshkin, E, Guo, H, Buck, M, Nguyen, M, Rajashankar, K.R, Wang, B, Nikolov, D.B.
Deposit date:2009-05-08
Release date:2009-06-30
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex.
Embo Rep., 10, 2009
3H6N
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BU of 3h6n by Molmil
Crystal Structure of the ubiquitin-like domain of plexin D1
Descriptor: ARSENIC, Plexin-D1, UNKNOWN ATOM OR ION
Authors:Tong, Y, Nedyalkova, L, Tempel, W, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Buck, M, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2009-04-23
Release date:2009-05-19
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Crystal Structure of the ubiquitin-like domain of plexin D1
To be Published
3KUZ
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BU of 3kuz by Molmil
Crystal structure of the ubiquitin like domain of PLXNC1
Descriptor: Plexin-C1, UNKNOWN ATOM OR ION
Authors:Wang, H, Li, B, Tempel, W, Tong, Y, Guan, X, Zhong, N, Crombet, L, MacKenzie, F, Buck, M, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2009-11-28
Release date:2009-12-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the ubiquitin like domain of PLXNC1
to be published
2R2O
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BU of 2r2o by Molmil
Crystal structure of the effector domain of human Plexin B1
Descriptor: Plexin-B1, UNKNOWN ATOM OR ION
Authors:Tong, Y, Tempel, W, Shen, L, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-08-27
Release date:2007-09-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of Rac1, Rnd1, and RhoD to a novel Rho GTPase interaction motif destabilizes dimerization of the plexin-B1 effector domain.
J.Biol.Chem., 282, 2007
6R9G
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BU of 6r9g by Molmil
Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Ye, F.Z, Zhang, X.D.
Deposit date:2019-04-03
Release date:2020-02-26
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7.
Elife, 9, 2020
6R9B
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BU of 6r9b by Molmil
Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Ye, F.Z, Zhang, X.D.
Deposit date:2019-04-03
Release date:2020-02-26
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7.
Elife, 9, 2020
5UI8
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BU of 5ui8 by Molmil
structure of sigmaN-holoenzyme
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Darst, S.A, Campbell, E.A.
Deposit date:2017-01-13
Release date:2017-02-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.76 Å)
Cite:Crystal structure of Aquifex aeolicus sigma (N) bound to promoter DNA and the structure of sigma (N)-holoenzyme.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5WY8
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BU of 5wy8 by Molmil
Crystal structure of PTP delta Ig1-Ig3 in complex with IL1RAPL1 Ig1-Ig3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-1 receptor accessory protein-like 1, ...
Authors:Kim, H.M, Won, S.Y, Kim, D.
Deposit date:2017-01-11
Release date:2017-11-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:LAR-RPTP Clustering Is Modulated by Competitive Binding between Synaptic Adhesion Partners and Heparan Sulfate
Front Mol Neurosci, 10, 2017
9Q91
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BU of 9q91 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 6
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-04-02
Last modified:2025-05-07
Method:ELECTRON MICROSCOPY (7.2 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q93
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BU of 9q93 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 4
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA-directed RNA polymerase subunit alpha, ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-04-02
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q94
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BU of 9q94 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA (34-MER), ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-04-09
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (5.8 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q96
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BU of 9q96 by Molmil
Cryo-EM Structure of Bacterial RNA polymerase-sigma54 transcription open complex with wild type sigma54, from RPi(-10-1)
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-03-12
Last modified:2025-05-07
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q97
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BU of 9q97 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA-directed RNA polymerase subunit alpha, ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-03-26
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q95
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BU of 9q95 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -10 to -1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA (32-MER), ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-03-26
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q98
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BU of 9q98 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA Non-template strand (34-MER), ...
Authors:Gao, F, Zhang, X.
Deposit date:2025-02-26
Release date:2025-03-26
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (8.3 Å)
Cite:Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
7QXI
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BU of 7qxi by Molmil
Cryo-EM structure of RNA polymerase-sigma54 holo enzyme with promoter DNA closed complex
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Ye, F.Z, Zhang, X.D.
Deposit date:2022-01-26
Release date:2022-11-09
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Mechanisms of DNA opening revealed in AAA+ transcription complex structures.
Sci Adv, 8, 2022
7QWP
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BU of 7qwp by Molmil
CryoEM structure of bacterial transcription close complex (RPc)
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Ye, F.Z, Zhang, X.D.
Deposit date:2022-01-25
Release date:2022-11-09
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Mechanisms of DNA opening revealed in AAA+ transcription complex structures.
Sci Adv, 8, 2022
7QV9
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BU of 7qv9 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA-directed RNA polymerase subunit alpha, ...
Authors:Ye, F.Z, Zhang, X.D.
Deposit date:2022-01-20
Release date:2022-11-09
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Mechanisms of DNA opening revealed in AAA+ transcription complex structures.
Sci Adv, 8, 2022
7BEG
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BU of 7beg by Molmil
Structures of class I bacterial transcription complexes
Descriptor: Class I pacrA promoter non-template DNA, Class I pacrA promoter template DNA, DNA-directed RNA polymerase subunit alpha, ...
Authors:Ye, F.Z, Hao, M, Zhang, X.D.
Deposit date:2020-12-23
Release date:2021-12-01
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structures of Class I and Class II Transcription Complexes Reveal the Molecular Basis of RamA-Dependent Transcription Activation.
Adv Sci, 9, 2022
7BEF
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BU of 7bef by Molmil
Structures of class II bacterial transcription complexes
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Hao, M, Ye, F.Z, Zhang, X.D.
Deposit date:2020-12-23
Release date:2021-12-01
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structures of Class I and Class II Transcription Complexes Reveal the Molecular Basis of RamA-Dependent Transcription Activation.
Adv Sci, 9, 2022
8RE4
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BU of 8re4 by Molmil
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 5nt pre-translocated complex
Descriptor: DNA (47-MER), DNA (50-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Gao, F, Zhang, X.
Deposit date:2023-12-10
Release date:2024-01-17
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
Proc.Natl.Acad.Sci.USA, 121, 2024
8REE
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BU of 8ree by Molmil
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 9nt complex
Descriptor: DNA (45-MER), DNA (49-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Gao, F, Zhang, X.
Deposit date:2023-12-10
Release date:2024-01-17
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
Proc.Natl.Acad.Sci.USA, 121, 2024

238895

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