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4YOU
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BU of 4you by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 2.20A resolution.
Descriptor: 3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K, Tsutsumi, K, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOR
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BU of 4yor by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 at 1.52A resolution.
Descriptor: 3-5 exonuclease PhoExo I, MAGNESIUM ION
Authors:Miyazono, K, Tsutsumi, K, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
5GHS
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BU of 5ghs by Molmil
DNA replication protein
Descriptor: Putative uncharacterized protein, SULFATE ION, SsDNA-specific exonuclease
Authors:Oyama, T.
Deposit date:2016-06-20
Release date:2016-10-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.591 Å)
Cite:Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication.
Nucleic Acids Res., 44, 2016
4YOX
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BU of 4yox by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dT
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*TP*TP*TP*TP*TP*TP*T)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
4YOW
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BU of 4yow by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dC
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*CP*CP*CP*CP*CP*CP*C)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
5GHR
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BU of 5ghr by Molmil
DNA replication protein
Descriptor: Putative uncharacterized protein, SULFATE ION, SsDNA-specific exonuclease
Authors:Oyama, T.
Deposit date:2016-06-20
Release date:2016-10-12
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.509 Å)
Cite:Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication.
Nucleic Acids Res., 44, 2016
4YOV
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BU of 4yov by Molmil
Crystal structure of a trimeric exonuclease PhoExo I from Pyrococcus horikoshii OT3 in complex with poly-dA
Descriptor: 3-5 exonuclease PhoExo I, 5'-D(*AP*AP*AP*AP*AP*AP*A)-3'
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2015-03-12
Release date:2015-07-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Nucleic Acids Res., 43, 2015
1LMC
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BU of 1lmc by Molmil
THE CRYSTAL STRUCTURE OF A COMPLEX BETWEEN BULGECIN, A BACTERIAL METABOLITE, AND LYSOZYME FROM THE RAINBOW TROUT
Descriptor: BULGECIN A, LYSOZYME
Authors:Karlsen, S, Hough, E.
Deposit date:1994-11-14
Release date:1996-01-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a complex between bulgecin, a bacterial metabolite, and lysozyme from the rainbow trout.
Acta Crystallogr.,Sect.D, 52, 1996
5ZB8
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BU of 5zb8 by Molmil
Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus
Descriptor: PfuEndoQ, SAMARIUM (III) ION, ZINC ION
Authors:Miyazono, K, Ito, T, Tanokura, M.
Deposit date:2018-02-10
Release date:2018-04-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus.
Nucleic Acids Res., 46, 2018
6YQH
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BU of 6yqh by Molmil
GH146 beta-L-arabinofuranosidase bound to covalent inhibitor
Descriptor: (1~{S},2~{S},3~{S},4~{S})-4-(hydroxymethyl)cyclopentane-1,2,3-triol, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Acetyl-CoA carboxylase, ...
Authors:McGregor, N.G.S, Davies, G.J.
Deposit date:2020-04-17
Release date:2021-01-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Cysteine Nucleophiles in Glycosidase Catalysis: Application of a Covalent beta-l-Arabinofuranosidase Inhibitor.
Angew.Chem.Int.Ed.Engl., 60, 2021
1LSP
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BU of 1lsp by Molmil
THE CRYSTAL STRUCTURE OF A BULGECIN-INHIBITED G-TYPE LYSOZYME FROM THE EGG-WHITE OF THE AUSTRALIAN BLACK SWAN. A COMPARISON OF THE BINDING OF BULGECIN TO THREE MURAMIDASES
Descriptor: BULGECIN A, LYSOZYME
Authors:Karlsen, S, Rao, Z.H, Hough, E, Isaacs, N.W.
Deposit date:1995-02-09
Release date:1996-01-01
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure of a bulgecin-inhibited g-type lysozyme from the egg white of the Australian black swan. A comparison of the binding of bulgecin to three muramidases.
Acta Crystallogr.,Sect.D, 52, 1996
4BJA
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BU of 4bja by Molmil
Globin-like protein Glb-12 from C.elegans
Descriptor: ACETATE ION, PROTEIN GLB-12, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:De Henau, S, Tilleman, L, Germani, F, Pauwels, M, Vlaeminck, C, Vanfleteren, J.R, Bert, W, Pesce, A, Nardini, M, Bolognesi, M, De Wael, K, Moens, L, Dewilde, S, Braeckman, B.P.
Deposit date:2013-04-17
Release date:2014-05-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A Redox Signalling Globin is Essential for Reproduction in Caenorhabditis Elegans.
Nat.Commun., 6, 2015
7EU5
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BU of 7eu5 by Molmil
Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with tricyclic small molecule inhibitor JBSNF-000107
Descriptor: 6-fluoranyl-10-methyl-1,10-diazatricyclo[6.3.1.0^{4,12}]dodeca-4,6,8(12)-trien-11-imine, Nicotinamide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Swaminathan, S, Gosu, R, Birudukota, S, Kandan, S, Vaithilingam, K.
Deposit date:2021-05-16
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.731 Å)
Cite:Novel tricyclic small molecule inhibitors of Nicotinamide N-methyltransferase for the treatment of metabolic disorders.
Sci Rep, 12, 2022
7ET7
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BU of 7et7 by Molmil
Co-crystal structure of Human Nicotinamide N-methyltransferase (NNMT) with tricyclic small molecule inhibitor JBSNF-000028
Descriptor: 10-methyl-1,10-diazatricyclo[6.3.1.0^{4,12}]dodeca-4,6,8(12)-trien-11-imine, Nicotinamide N-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Swaminathan, S, Gosu, R, Birudukota, S, Kandan, S, Vaithilingam, K.
Deposit date:2021-05-12
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Novel tricyclic small molecule inhibitors of Nicotinamide N-methyltransferase for the treatment of metabolic disorders.
Sci Rep, 12, 2022
3X27
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BU of 3x27 by Molmil
Structure of McbB in complex with tryptophan
Descriptor: Cucumopine synthase, TRYPTOPHAN
Authors:Mori, T, Sahashi, S, Morita, H, Abe, I.
Deposit date:2014-12-10
Release date:2015-10-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.481 Å)
Cite:Structural Basis for beta-Carboline Alkaloid Production by the Microbial Homodimeric Enzyme McbB
Chem.Biol., 22, 2015
4JDE
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BU of 4jde by Molmil
Crystal structure of PUD-1/PUD-2 heterodimer
Descriptor: CHLORIDE ION, GLYCEROL, Protein F15E11.1, ...
Authors:Luo, S, Ye, K.
Deposit date:2013-02-25
Release date:2013-11-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Characterization of PUD-1 and PUD-2, two proteins up-regulated in a long-lived daf-2 mutant.
Plos One, 8, 2013
7X85
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BU of 7x85 by Molmil
Crystal structure of chicken CENP-C Cupin domain
Descriptor: CENP-C, CITRIC ACID, GLYCEROL
Authors:Ariyoshi, M, Hara, M, Fukagawa, T.
Deposit date:2022-03-11
Release date:2023-03-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.639 Å)
Cite:Centromere/kinetochore is assembled through CENP-C oligomerization.
Mol.Cell, 83, 2023
6K7F
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BU of 6k7f by Molmil
Crystal structure of MBPholo-Tim21 fusion protein with a 17-residue helical linker
Descriptor: Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Bala, S, Shimada, A, Kohda, D.
Deposit date:2019-06-07
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study.
Biochim Biophys Acta Gen Subj, 1864, 2020
6K7D
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BU of 6k7d by Molmil
Crystal structure of MBPapo-Tim21 fusion protein with a 16-residue helical linker
Descriptor: Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21
Authors:Bala, S, Shimada, A, Kohda, D.
Deposit date:2019-06-07
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study.
Biochim Biophys Acta Gen Subj, 1864, 2020
4QLY
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BU of 4qly by Molmil
Crystal structure of CLA-ER, a novel enone reductase catalyzing a key step of a gut-bacterial fatty acid saturation metabolism, biohydrogenation
Descriptor: Enone reductase CLA-ER, FLAVIN MONONUCLEOTIDE
Authors:Hou, F, Miyakawa, T, Tanokura, M.
Deposit date:2014-06-13
Release date:2015-02-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Structure and reaction mechanism of a novel enone reductase.
Febs J., 282, 2015
4ZM7
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BU of 4zm7 by Molmil
PcCel45A N105D mutatnt at cryo condition
Descriptor: Endoglucanase V-like protein
Authors:Nakamura, A, Ishida, T, Samejima, M, Igarashi, K.
Deposit date:2015-05-02
Release date:2015-09-02
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (0.701 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3WKX
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BU of 3wkx by Molmil
Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum arabinose complex form
Descriptor: Non-reducing end beta-L-arabinofuranosidase, ZINC ION, beta-L-arabinofuranose
Authors:Ito, T, Saikawa, K, Arakawa, T, Wakagi, T, Fujita, K.
Deposit date:2013-11-01
Release date:2014-04-30
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of glycoside hydrolase family 127 beta-l-arabinofuranosidase from Bifidobacterium longum.
Biochem.Biophys.Res.Commun., 447, 2014
5D1O
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BU of 5d1o by Molmil
Archaeal ATP-dependent RNA ligase - form 1
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA ligase, MAGNESIUM ION, ...
Authors:Murakami, K.S.
Deposit date:2015-08-04
Release date:2016-03-09
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.648 Å)
Cite:Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Nucleic Acids Res., 44, 2016
5D1P
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BU of 5d1p by Molmil
Archaeal ATP-dependent RNA ligase - form 2
Descriptor: ATP-dependent RNA ligase, MAGNESIUM ION, SULFATE ION
Authors:Murakami, K.S.
Deposit date:2015-08-04
Release date:2016-03-09
Last modified:2016-03-30
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
Nucleic Acids Res., 44, 2016
5WQH
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BU of 5wqh by Molmil
Structure of fungal meroterpenoid isomerase Trt14 complexed with substrate analog and endo-terretonin D
Descriptor: CALCIUM ION, Isomerase trt14, methyl (2S,4aR,4bS,5S,6aS,10aS,10bS,12aS)-2,4b,7,7,10a,12,12a-heptamethyl-5-oxidanyl-1,4,6,8-tetrakis(oxidanylidene)-4a,5,6a,9,10,10b-hexahydronaphtho[1,2-h]isochromene-2-carboxylate, ...
Authors:Mori, T, Matsuda, Y, Abe, I.
Deposit date:2016-11-26
Release date:2017-07-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Molecular basis for the unusual ring reconstruction in fungal meroterpenoid biogenesis
Nat. Chem. Biol., 13, 2017

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