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Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1
分子名称:	DNA excision repair protein ERCC-1, DNA repair endonuclease XPF, MERCURY (II) ION
著者	Tsodikov, O.V, Enzlin, J.H, Scharer, O.D, Ellenberger, T.
登録日	2005-06-20
公開日	2005-08-02
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (2.7 Å)
主引用文献	Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1. Proc.Natl.Acad.Sci.Usa, 102, 2005

2A1I

Crystal Structure of the Central Domain of Human ERCC1
分子名称:	DNA excision repair protein ERCC-1, MERCURY (II) ION
著者	Tsodikov, O.V, Enzlin, J.H, Scharer, O.D, Ellenberger, T.
登録日	2005-06-20
公開日	2005-08-02
最終更新日	2024-02-14
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1. Proc.Natl.Acad.Sci.Usa, 102, 2005

3PVV

Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNA
分子名称:	Chromosomal replication initiator protein dnaA, DNA (5'-D(CPGPTPTPGPTPCPCPAPCPAPAPC)-3'), DNA (5'-D(GPTPTPGPTPGPGPAPCPAPAPCPG)-3')
著者	Tsodikov, O.V, Biswas, T.
登録日	2010-12-07
公開日	2011-05-25
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Structural and Thermodynamic Signatures of DNA Recognition by Mycobacterium tuberculosis DnaA. J.Mol.Biol., 410, 2011

3PVP

Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNA
分子名称:	Chromosomal replication initiator protein dnaA, DNA (5'-D(CPGPTPTPAPTPCPCPAPCPAPAPC)-3'), DNA (5'-D(GPTPTPGPTPGPGPAPTPAPAPCPG)-3')
著者	Tsodikov, O.V, Biswas, T.
登録日	2010-12-07
公開日	2011-05-25
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Structural and Thermodynamic Signatures of DNA Recognition by Mycobacterium tuberculosis DnaA. J.Mol.Biol., 410, 2011

2JNW

Solution structure of a ERCC1-XPA heterodimer
分子名称:	DNA excision repair protein ERCC-1, DNA-repair protein complementing XP-A cells
著者	Tsodikov, O.V, Ivanov, D, Orelli, B, Staresincic, L, Scharer, O.D, Wagner, G.
登録日	2007-02-07
公開日	2007-10-30
最終更新日	2023-12-20
実験手法	SOLUTION NMR
主引用文献	Structural basis for the recruitment of ERCC1-XPF to nucleotide excision repair complexes by XPA Embo J., 26, 2007

2R8Z

Crystal structure of YrbI phosphatase from Escherichia coli in complex with a phosphate and a calcium ion
分子名称:	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, CALCIUM ION, PHOSPHATE ION
著者	Tsodikov, O.V, Aggarwal, P, Rubin, J.R, Stuckey, J.A, Woodard, R.W, Biswas, T.
登録日	2007-09-11
公開日	2008-09-23
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	The Tail of KdsC: CONFORMATIONAL CHANGES CONTROL THE ACTIVITY OF A HALOACID DEHALOGENASE SUPERFAMILY PHOSPHATASE. J.Biol.Chem., 284, 2009

2R8X

Crystal structure of YrbI phosphatase from Escherichia coli
分子名称:	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, CHLORIDE ION
著者	Tsodikov, O.V, Aggarwal, P, Rubin, J.R, Stuckey, J.A, Woodard, R.W, Biswas, T.
登録日	2007-09-11
公開日	2008-09-23
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (2.6 Å)
主引用文献	The Tail of KdsC: CONFORMATIONAL CHANGES CONTROL THE ACTIVITY OF A HALOACID DEHALOGENASE SUPERFAMILY PHOSPHATASE. J.Biol.Chem., 284, 2009

2R8Y

Crystal structure of YrbI phosphatase from Escherichia coli in a complex with Ca
分子名称:	CALCIUM ION, CHLORIDE ION, YrbI from Escherichia coli
著者	Tsodikov, O.V, Aggarwal, P, Rubin, J.R, Stuckey, J.A, Woodard, R.W, Biswas, T.
登録日	2007-09-11
公開日	2008-09-23
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.85 Å)
主引用文献	The Tail of KdsC: CONFORMATIONAL CHANGES CONTROL THE ACTIVITY OF A HALOACID DEHALOGENASE SUPERFAMILY PHOSPHATASE. J.Biol.Chem., 284, 2009

2R8E

Crystal structure of YrbI from Escherichia coli in complex with Mg
分子名称:	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, CHLORIDE ION, MAGNESIUM ION
著者	Tsodikov, O.V, Aggarwal, P, Rubin, J.R, Stuckey, J.A, Woodard, R, Biswas, T.
登録日	2007-09-10
公開日	2008-09-23
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.4 Å)
主引用文献	The Tail of KdsC: CONFORMATIONAL CHANGES CONTROL THE ACTIVITY OF A HALOACID DEHALOGENASE SUPERFAMILY PHOSPHATASE. J.Biol.Chem., 284, 2009

4Z2Y

Crystal structure of methyltransferase CalO6
分子名称:	CalO6, MERCURY (II) ION
著者	Hou, C, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日	2015-03-30
公開日	2015-07-22
最終更新日	2024-03-06
実験手法	X-RAY DIFFRACTION (3.4 Å)
主引用文献	Crystal structure of O-methyltransferase CalO6 from the calicheamicin biosynthetic pathway: a case of challenging structure determination at low resolution. Bmc Struct.Biol., 15, 2015

3HYC

Crystal structure of E. coli phosphatase YrbI, with Mg, tetragonal form
分子名称:	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, CHLORIDE ION, MAGNESIUM ION
著者	Tsodikov, O.V, Biswas, T.
登録日	2009-06-22
公開日	2009-09-01
最終更新日	2023-09-06
実験手法	X-RAY DIFFRACTION (3.06 Å)
主引用文献	The Tail of KdsC: CONFORMATIONAL CHANGES CONTROL THE ACTIVITY OF A HALOACID DEHALOGENASE SUPERFAMILY PHOSPHATASE. J.Biol.Chem., 284, 2009

4RVH

Crystal structure of MtmC in complex with SAH and TDP-4-keto-D-olivose
分子名称:	D-mycarose 3-C-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION, ...
著者	Tsodikov, O.V, Hou, C, Chen, J.-M, Rohr, J.
登録日	2014-11-26
公開日	2015-01-28
最終更新日	2015-05-06
実験手法	X-RAY DIFFRACTION (2.4 Å)
主引用文献	Structural Insight into MtmC, a Bifunctional Ketoreductase-Methyltransferase Involved in the Assembly of the Mithramycin Trisaccharide Chain. Biochemistry, 54, 2015

4RVG

Crystal structure of MtmC in complex with SAM and TDP
分子名称:	ACETATE ION, D-mycarose 3-C-methyltransferase, S-ADENOSYLMETHIONINE, ...
著者	Tsodikov, O.V, Hou, C, Chen, J.-M, Rohr, J.
登録日	2014-11-26
公開日	2015-01-28
最終更新日	2024-02-28
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Structural Insight into MtmC, a Bifunctional Ketoreductase-Methyltransferase Involved in the Assembly of the Mithramycin Trisaccharide Chain. Biochemistry, 54, 2015

4RVF

Crystal structure of MtmC in complex with TDP
分子名称:	D-mycarose 3-C-methyltransferase, THYMIDINE-5'-DIPHOSPHATE, ZINC ION
著者	Tsodikov, O.V, Hou, C, Chen, J.-M, Rohr, J.
登録日	2014-11-26
公開日	2015-01-28
最終更新日	2015-05-06
実験手法	X-RAY DIFFRACTION (2.7 Å)
主引用文献	Structural Insight into MtmC, a Bifunctional Ketoreductase-Methyltransferase Involved in the Assembly of the Mithramycin Trisaccharide Chain. Biochemistry, 54, 2015

4RVD

Crystal structure of MtmC in complex with SAM
分子名称:	ACETATE ION, D-mycarose 3-C-methyltransferase, S-ADENOSYLMETHIONINE, ...
著者	Tsodikov, O.V, Hou, C, Chen, J.-M, Rohr, J.
登録日	2014-11-26
公開日	2015-01-28
最終更新日	2015-05-06
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Structural Insight into MtmC, a Bifunctional Ketoreductase-Methyltransferase Involved in the Assembly of the Mithramycin Trisaccharide Chain. Biochemistry, 54, 2015

5WHF

Crystal structure of vimentin coil 1B packed in a high-order filamentous form
分子名称:	GLYCEROL, Vimentin
著者	Obiero, J.M, Pang, A.H, Tsodikov, O.V.
登録日	2017-07-16
公開日	2018-06-20
最終更新日	2023-10-04
実験手法	X-RAY DIFFRACTION (2.25 Å)
主引用文献	A crystal structure of coil 1B of vimentin in the filamentous form provides a model of a high-order assembly of a vimentin filament. FEBS J., 285, 2018

5WMM

Crystal structure of an adenylation domain interrupted by a methylation domain (AMA4) from nonribosomal peptide synthetase TioS
分子名称:	(2S)-2-amino-3-methylbutanoyl (2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl hydrogen (S)-phosphate, CALCIUM ION, CHLORIDE ION, ...
著者	Pang, A.H, Mori, S, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日	2017-07-30
公開日	2018-03-14
最終更新日	2023-10-04
実験手法	X-RAY DIFFRACTION (2.9 Å)
主引用文献	Structural basis for backbone N-methylation by an interrupted adenylation domain. Nat. Chem. Biol., 14, 2018

6OVQ

Crystal structure of mithramycin 3-side chain keto-reductase MtmW
分子名称:	GLYCEROL, Putative Side chain reductase
著者	Hou, C, Yu, X, Rohr, J, Tsodikov, O.V.
登録日	2019-05-08
公開日	2019-11-27
最終更新日	2023-10-11
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Discovery of a Cryptic Intermediate in Late Steps of Mithramycin Biosynthesis. Angew.Chem.Int.Ed.Engl., 59, 2020

5E8I

Crystal structure of the DNA binding domain of human transcription factor FLI1 in complex with a 10-mer DNA ACCGGAAGTG
分子名称:	CALCIUM ION, DNA (5'-D(APCPCPGPGPAPAPGPTPG)-3'), DNA (5'-D(CPAPCPTPTPCPCPGPGPT)-3'), ...
著者	Hou, C, Tsodikov, O.V.
登録日	2015-10-14
公開日	2015-12-09
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (3.45 Å)
主引用文献	Structural Basis for Dimerization and DNA Binding of Transcription Factor FLI1. Biochemistry, 54, 2015

3R1K

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis H37Rv in complex with CoA and an acetamide moiety
分子名称:	ACETAMIDE, COENZYME A, Enhanced intracellular survival protein
著者	Biswas, T, Chen, W, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日	2011-03-10
公開日	2011-06-01
最終更新日	2024-02-21
実験手法	X-RAY DIFFRACTION (1.95 Å)
主引用文献	Unusual regioversatility of acetyltransferase Eis, a cause of drug resistance in XDR-TB. Proc.Natl.Acad.Sci.USA, 108, 2011

5TVJ

Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with CoA and inhibitor 2k*: 1-(4-fluorophenyl)-2-[2-(4-methylphenyl)-2-oxoethyl]pyrrolo[1,2-a]pyrazin-2-ium
分子名称:	1-(4-fluorophenyl)-2-[2-(4-methylphenyl)-2-oxoethyl]pyrrolo[1,2-a]pyrazin-2-ium, CHLORIDE ION, COENZYME A, ...
著者	Gajadeera, C.S, Garzan, A, Hou, C, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日	2016-11-09
公開日	2017-03-01
最終更新日	2023-10-04
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Combating Enhanced Intracellular Survival (Eis)-Mediated Kanamycin Resistance of Mycobacterium tuberculosis by Novel Pyrrolo[1,5-a]pyrazine-Based Eis Inhibitors. ACS Infect Dis, 3, 2017

3U9F

Structure of CATI in complex with chloramphenicol
分子名称:	CHLORAMPHENICOL, Chloramphenicol acetyltransferase
著者	Biswas, T, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日	2011-10-18
公開日	2012-02-15
最終更新日	2024-02-28
実験手法	X-RAY DIFFRACTION (2.9 Å)
主引用文献	The structural basis for substrate versatility of chloramphenicol acetyltransferase CAT(I). Protein Sci., 21, 2012

3U9B

Structure of apo-CATI
分子名称:	Chloramphenicol acetyltransferase
著者	Biswas, T, Garneau-Tsodikova, S, Tsodikov, O.V.
登録日	2011-10-18
公開日	2012-02-15
最終更新日	2024-02-28
実験手法	X-RAY DIFFRACTION (3.2 Å)
主引用文献	The structural basis for substrate versatility of chloramphenicol acetyltransferase CAT(I). Protein Sci., 21, 2012

2ONT

A swapped dimer of the HIV-1 capsid C-terminal domain
分子名称:	Capsid protein p24
著者	Ivanov, D, Tsodikov, O.V, Kasanov, J, Ellenberger, T, Wagner, G, Collins, T.
登録日	2007-01-24
公開日	2007-02-20
最終更新日	2023-08-30
実験手法	X-RAY DIFFRACTION (2.4 Å)
主引用文献	Domain-swapped dimerization of the HIV-1 capsid C-terminal domain Proc.Natl.Acad.Sci.Usa, 104, 2007

5W35

Crystal structure of the RNA polymerase domain (RPD) of Mycobacterium tuberculosis primase DnaG in complex with a double-stranded DNA oligomer with a 1-nucleotide overhang
分子名称:	DNA primase, synthetic DNA oligomer 5'-CCACTTCCGGTC, synthetic DNA oligomer 5'-TGACCGGAAGTGG
著者	Hou, C, Tsodikov, O.V.
登録日	2017-06-07
公開日	2018-03-28
最終更新日	2023-10-04
実験手法	X-RAY DIFFRACTION (3.31 Å)
主引用文献	Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry, 57, 2018

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