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5JNF
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BU of 5jnf by Molmil
Crystal structure of the LgrA initiation module excluding the Asub domain: F-A-delta-sub
分子名称: FORMIC ACID, Linear gramicidin synthase subunit A
著者Reimer, J.M, Aloise, M.N, Schmeing, T.M.
登録日2016-04-29
公開日2016-10-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Manipulation of an existing crystal form unexpectedly results in interwoven packing networks with pseudo-translational symmetry
Acta Crystallogr.,Sect.D, 72, 2016
6EDK
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BU of 6edk by Molmil
Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis with N10-formyltetrahydrofolate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Formyltransferase PseJ, N-{4-[{[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}(formyl)amino]benzoyl}-L-glutamic acid, ...
著者Reimer, J.M, Harb, I, Schmeing, T.M.
登録日2018-08-09
公開日2018-10-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain.
ACS Chem. Biol., 13, 2018
6MFW
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BU of 6mfw by Molmil
Crystal structure of a 4-domain construct of LgrA in the substrate donation state
分子名称: (2~{R})-~{N}-[3-[2-[[(2~{S})-2-formamido-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]-3,3-dimethyl-2-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-butanamide, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Linear gramicidin synthase subunit A, ...
著者Reimer, J.M, Eivaskhani, M, Schmeing, T.M.
登録日2018-09-12
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
6MFY
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BU of 6mfy by Molmil
Crystal structure of a 5-domain construct of LgrA in the substrate donation state
分子名称: 4'-PHOSPHOPANTETHEINE, Linear gramicidin synthase subunit A, PHOSPHATE ION
著者Reimer, J.M, Eivaskhani, M, Harb, I, Schmeing, T.M.
登録日2018-09-12
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
6MFX
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BU of 6mfx by Molmil
Crystal structure of a 4-domain construct of a mutant of LgrA in the substrate donation state
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Linear gramicidin synthase subunit A, N-[2-(acetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide, ...
著者Reimer, J.M, Eivaskhani, M, Schmeing, T.M.
登録日2018-09-12
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
6MFZ
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BU of 6mfz by Molmil
Crystal structure of dimodular LgrA in a condensation state
分子名称: 4'-PHOSPHOPANTETHEINE, Linear gramicidin synthase subunit A
著者Reimer, J.M, Eivaskhani, M, Harb, I, Schmeing, T.M.
登録日2018-09-12
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (6 Å)
主引用文献Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
6CI5
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BU of 6ci5 by Molmil
Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis in complex with UDP-4,6-dideoxy-4-formamido-L-AltNAc and tetrahydrofolate
分子名称: (2R,3R,4S,5R,6S)-3-(acetylamino)-5-(formylamino)-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name), N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, SULFATE ION, ...
著者Reimer, J.M, Harb, I, Schmeing, T.M.
登録日2018-02-23
公開日2018-10-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.00003052 Å)
主引用文献Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain.
ACS Chem. Biol., 13, 2018
6CI2
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BU of 6ci2 by Molmil
Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, formyltransferase PseJ
著者Reimer, J.M, Jiang, J, Harb, I, Schmeing, T.M.
登録日2018-02-23
公開日2018-10-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain.
ACS Chem. Biol., 13, 2018
6MG0
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BU of 6mg0 by Molmil
Crystal structure of a 5-domain construct of LgrA in the thiolation state
分子名称: 5'-({[(2R,3R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-{[oxido(oxo)phosphonio]oxy}butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-4-methylpentyl]sulfonyl}amino)-5'-deoxyadenosine, Linear gramicidin synthase subunit A
著者Reimer, J.M, Eivaskhani, M, Harb, I, Schmeing, T.M.
登録日2018-09-12
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (6 Å)
主引用文献Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility.
Science, 366, 2019
8DYV
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BU of 8dyv by Molmil
Structure of human cytoplasmic dynein-1 bound to one Lis1
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
著者Reimer, J.M, DeSantis, M, Reck-Peterson, S.L, Leschziner, A.E.
登録日2022-08-05
公開日2023-02-01
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.97 Å)
主引用文献Structures of human dynein in complex with the lissencephaly 1 protein, LIS1.
Elife, 12, 2023
8DYU
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BU of 8dyu by Molmil
Structure of human cytoplasmic dynein-1 bound to two Lis1 proteins
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
著者Reimer, J.M, DeSantis, M, Reck-Peterson, S.L, Leschziner, A.E.
登録日2022-08-05
公開日2023-02-01
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structures of human dynein in complex with the lissencephaly 1 protein, LIS1.
Elife, 12, 2023
5ES8
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BU of 5es8 by Molmil
Crystal structure of the initiation module of LgrA in the thiolation state
分子名称: Linear gramicidin synthetase subunit A, [(3~{R})-4-[[3-[2-[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate
著者Reimer, J.M, Aloise, M.N, Schmeing, T.M.
登録日2015-11-16
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.547 Å)
主引用文献Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase.
Nature, 529, 2016
5ES5
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BU of 5es5 by Molmil
Crystal structure of the initiation module of LgrA in the "open" and "closed " adenylation states
分子名称: Linear gramicidin synthetase subunit A, SULFATE ION
著者Reimer, J.M, Aloise, M.N, Schmeing, T.M.
登録日2015-11-16
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase.
Nature, 529, 2016
5ES6
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BU of 5es6 by Molmil
Crystal structure of the first two domains of the initiation module of LgrA
分子名称: FORMIC ACID, Linear gramicidin synthase subunit A
著者Reimer, J.M, Aloise, M.N, Schmeing, T.M.
登録日2015-11-16
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase.
Nature, 529, 2016
5ES9
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BU of 5es9 by Molmil
Crystal structure of the LgrA initiation module in the formylation state
分子名称: 4'-PHOSPHOPANTETHEINE, Linear gramicidin synthetase subunit A
著者Reimer, J.M, Aloise, M.N, Schmeing, T.M.
登録日2015-11-16
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.77 Å)
主引用文献Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase.
Nature, 529, 2016
5ES7
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BU of 5es7 by Molmil
Crystal structure of the F-A domains of the LgrA initiation module soaked with FON, AMPcPP, and valine.
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Linear gramicidin synthetase subunit A, N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid, ...
著者Reimer, J.M, Aloise, M.N, Schmeing, T.M.
登録日2015-11-16
公開日2016-01-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.805 Å)
主引用文献Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase.
Nature, 529, 2016
8E06
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BU of 8e06 by Molmil
Symmetry expansion of dimeric LRRK1
分子名称: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 1
著者Reimer, J.M, Lin, Y.X, Leschziner, A.E.
登録日2022-08-08
公開日2023-08-30
最終更新日2023-11-29
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structure of LRRK1 and mechanisms of autoinhibition and activation.
Nat.Struct.Mol.Biol., 30, 2023
8E05
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BU of 8e05 by Molmil
Structure of dimeric LRRK1
分子名称: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 1
著者Reimer, J.M, Lin, Y.X, Leschziner, A.E.
登録日2022-08-08
公開日2023-08-30
最終更新日2023-11-29
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Structure of LRRK1 and mechanisms of autoinhibition and activation.
Nat.Struct.Mol.Biol., 30, 2023
8E04
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BU of 8e04 by Molmil
Structure of monomeric LRRK1
分子名称: GUANOSINE-5'-DIPHOSPHATE, Leucine-rich repeat serine/threonine-protein kinase 1
著者Reimer, J.M, Mathea, S, Chatterjee, D, Knapp, S, Leschziner, A.E.
登録日2022-08-08
公開日2023-08-30
最終更新日2023-11-29
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structure of LRRK1 and mechanisms of autoinhibition and activation.
Nat.Struct.Mol.Biol., 30, 2023
6CI4
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BU of 6ci4 by Molmil
Crystal structure of the formyltransferase PseJ from Anoxybacillus kamchatkensis soaked with UDP-4-amino-4,6-dideoxy-L-AltNAc
分子名称: (2R,3R,4S,5R,6S)-3-(acetylamino)-5-amino-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate, formyltransferase PseJ
著者Harb, I, Reimer, J.M, Schmeing, T.M.
登録日2018-02-23
公開日2018-10-17
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.824068 Å)
主引用文献Structural Insight into a Novel Formyltransferase and Evolution to a Nonribosomal Peptide Synthetase Tailoring Domain.
ACS Chem. Biol., 13, 2018
8DZZ
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BU of 8dzz by Molmil
Cryo-EM structure of chi dynein bound to Lis1
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein heavy chain, ...
著者Reimer, J.M, Lahiri, I, Leschziner, A.E.
登録日2022-08-08
公開日2023-08-30
最終更新日2023-09-27
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Lis1 relieves cytoplasmic dynein-1 autoinhibition by acting as a molecular wedge.
Nat.Struct.Mol.Biol., 30, 2023
8E00
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BU of 8e00 by Molmil
Symmetry expansion of yeast cytoplasmic dynein-1 bound to Lis1 in the chi conformation.
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Dynein heavy chain, ...
著者Reimer, J.M, Lahiri, I, Leschziner, A.E.
登録日2022-08-08
公開日2023-08-30
最終更新日2023-09-27
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Lis1 relieves cytoplasmic dynein-1 autoinhibition by acting as a molecular wedge.
Nat.Struct.Mol.Biol., 30, 2023
7MGM
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BU of 7mgm by Molmil
Structure of yeast cytoplasmic dynein with AAA3 Walker B mutation bound to Lis1
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Lahiri, I, Reimer, J.M, Leschziner, A.E.
登録日2021-04-12
公開日2022-01-19
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for cytoplasmic dynein-1 regulation by Lis1.
Elife, 11, 2022
5D3K
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BU of 5d3k by Molmil
Crystal structure of the thioesterase domain of deoxyerythronolide B synthase
分子名称: CALCIUM ION, Erythronolide synthase, modules 5 and 6, ...
著者Bergeret, F, Argyropoulos, P, Boddy, C.N, Schmeing, T.M.
登録日2015-08-06
公開日2015-12-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Towards a characterization of the structural determinants of specificity in the macrocyclizing thioesterase for deoxyerythronolide B biosynthesis.
Biochim.Biophys.Acta, 1860, 2015
5D3Z
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BU of 5d3z by Molmil
Crystal structure of the thioesterase domain of deoxyerythronolide B synthase in complex with a small phosphonate inhibitor
分子名称: CALCIUM ION, Erythronolide synthase, modules 5 and 6, ...
著者Bergeret, F, Argyropoulos, P, Boddy, C.N, Schmeing, T.M.
登録日2015-08-06
公開日2015-12-09
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Towards a characterization of the structural determinants of specificity in the macrocyclizing thioesterase for deoxyerythronolide B biosynthesis.
Biochim.Biophys.Acta, 1860, 2015

 

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