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7FDF
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BU of 7fdf by Molmil
The E145S mutant of the regulatory domain of YeiE, a sulfite sensing LysR-type transcriptional regulator from Cronobacter sakazakii (sulfate-bound form)
分子名称: LysR family transcriptional regulator, SULFATE ION
著者Hong, S, Ha, N.-C.
登録日2021-07-16
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structures of YeiE from Cronobacter sakazakii and the role of sulfite tolerance in gram-negative bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
5SZX
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BU of 5szx by Molmil
Epstein-Barr virus Zta DNA binding domain homodimer in complex with methylated DNA
分子名称: DNA (5'-D(*AP*AP*GP*CP*AP*CP*TP*GP*AP*GP*(5CM)P*GP*AP*TP*GP*AP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*TP*CP*AP*TP*(5CM)P*GP*CP*TP*CP*AP*GP*TP*GP*CP*T)-3'), PHOSPHATE ION, ...
著者Hong, S, Horton, J.R, Cheng, X.
登録日2016-08-15
公開日2017-03-01
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.
Nucleic Acids Res., 45, 2017
5T01
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BU of 5t01 by Molmil
Human c-Jun DNA binding domain homodimer in complex with methylated DNA
分子名称: DNA (5'-D(*AP*AP*TP*GP*GP*AP*(5CM)P*GP*AP*GP*TP*CP*AP*TP*AP*GP*GP*AP*G)-3'), DNA (5'-D(P*CP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*GP*TP*CP*CP*AP*T)-3'), Transcription factor AP-1
著者Hong, S, Horton, J.R, Cheng, X.
登録日2016-08-15
公開日2017-03-01
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Methyl-dependent and spatial-specific DNA recognition by the orthologous transcription factors human AP-1 and Epstein-Barr virus Zta.
Nucleic Acids Res., 45, 2017
5VPP
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BU of 5vpp by Molmil
The 70S P-site tRNA SufA6 complex
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
登録日2017-05-05
公開日2018-09-26
最終更新日2018-11-07
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VPO
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BU of 5vpo by Molmil
The 70S P-site ASL SufA6 complex
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
登録日2017-05-05
公開日2018-09-26
最終更新日2018-11-07
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Mechanism of tRNA-mediated +1 ribosomal frameshifting.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6K22
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BU of 6k22 by Molmil
Crystal structure of Ca-bound human Annexin A5 in low salt condition
分子名称: Annexin A5, CALCIUM ION
著者Hong, S, Ha, N.-C.
登録日2019-05-13
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.747 Å)
主引用文献High-resolution structures of annexin A5 in a two-dimensional array.
J.Struct.Biol., 209, 2020
6K25
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BU of 6k25 by Molmil
Crystal structure of Ca-unbound human Annexin A5 in low salt condition
分子名称: Annexin A5
著者Hong, S, Ha, N.-C.
登録日2019-05-13
公開日2020-03-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.401 Å)
主引用文献High-resolution structures of annexin A5 in a two-dimensional array.
J.Struct.Biol., 209, 2020
6AKV
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BU of 6akv by Molmil
Crystal structure of LysB4, the endolysin from Bacillus cereus-targeting bacteriophage B4
分子名称: CHLORIDE ION, LysB4, SULFATE ION, ...
著者Hong, S, Ha, N.-C.
登録日2018-09-03
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of LysB4, an Endolysin fromBacillus cereus-Targeting Bacteriophage B4.
Mol. Cells, 42, 2019
5YHR
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BU of 5yhr by Molmil
Crystal structure of the anti-CRISPR protein, AcrF2
分子名称: Anti-CRISPR protein 30, CALCIUM ION
著者Hong, S, Ka, D, Bae, E.
登録日2017-09-29
公開日2018-02-07
最終更新日2019-02-20
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献CRISPR RNA and anti-CRISPR protein binding to theXanthomonas albilineansCsy1-Csy2 heterodimer in the type I-F CRISPR-Cas system
J. Biol. Chem., 293, 2018
7ERQ
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BU of 7erq by Molmil
The regulatory domain of YeiE, a sulfite sensing LysR-type transcriptional regulator from Cronobacter sakazakii (ligand-free form)
分子名称: LysR family transcriptional regulator
著者Hong, S, Ha, N.-C.
登録日2021-05-06
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structures of YeiE from Cronobacter sakazakii and the role of sulfite tolerance in gram-negative bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7ERP
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BU of 7erp by Molmil
The regulatory domain of YeiE, a sulfite sensing LysR-type transcriptional regulator from Cronobacter sakazakii (sulfite-bound form)
分子名称: LysR family transcriptional regulator, SULFITE ION
著者Hong, S, Ha, N.-C.
登録日2021-05-06
公開日2022-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Crystal structures of YeiE from Cronobacter sakazakii and the role of sulfite tolerance in gram-negative bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
7E1H
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BU of 7e1h by Molmil
crystal structure of RD-BEF
分子名称: BERYLLIUM TRIFLUORIDE ION, DNA-binding response regulator, MAGNESIUM ION
著者Hong, S, Zhang, X, Zhang, P.
登録日2021-02-01
公開日2022-02-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.805 Å)
主引用文献Structural basis of phosphorylation-induced activation of the response regulator VbrR.
Acta Biochim.Biophys.Sin., 2023
7E1F
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BU of 7e1f by Molmil
Native-DBD
分子名称: DNA-binding response regulator
著者Hong, S, Zhang, P.
登録日2021-02-01
公開日2022-02-09
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.447 Å)
主引用文献Structural basis of phosphorylation-induced activation of the response regulator VbrR.
Acta Biochim.Biophys.Sin., 2023
7E1D
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BU of 7e1d by Molmil
Se-DBD
分子名称: DNA-binding response regulator
著者Hong, S, Zhang, P.
登録日2021-02-01
公開日2022-02-09
最終更新日2023-02-22
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献Structural basis of phosphorylation-induced activation of the response regulator VbrR.
Acta Biochim.Biophys.Sin., 2023
7E1B
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BU of 7e1b by Molmil
Crystal structure of VbrR-DNA complex
分子名称: DNA (26-MER), DNA-binding response regulator
著者Hong, S, Zhang, X, Zhang, P.
登録日2021-02-01
公開日2022-02-09
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (4.587 Å)
主引用文献Structural basis of phosphorylation-induced activation of the response regulator VbrR.
Acta Biochim.Biophys.Sin., 2023
5ZQS
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BU of 5zqs by Molmil
Crystal structure of beta-xylosidase mutant (E186Q/F503Y) from Bacillus pumilus
分子名称: Beta-xylosidase, beta-D-xylopyranose, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
著者Ha, N.C, Hong, S, Jo, I.
登録日2018-04-20
公開日2018-05-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.782 Å)
主引用文献Structure-based protein engineering of bacterial beta-xylosidase to increase the production yield of xylobiose from xylose
Biochem. Biophys. Res. Commun., 501, 2018
5ZQJ
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BU of 5zqj by Molmil
Crystal structure of beta-xylosidase from Bacillus pumilus
分子名称: Beta-xylosidase, GLYCEROL
著者Ha, N.C, Hong, S, Jo, I.
登録日2018-04-19
公開日2018-05-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Structure-based protein engineering of bacterial beta-xylosidase to increase the production yield of xylobiose from xylose
Biochem. Biophys. Res. Commun., 501, 2018
5ZQX
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BU of 5zqx by Molmil
Crystal structure of beta-xylosidase mutant (E186Q) from Bacillus pumilus
分子名称: Beta-xylosidase, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
著者Ha, N.C, Hong, S, Jo, I.
登録日2018-04-20
公開日2018-05-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-based protein engineering of bacterial beta-xylosidase to increase the production yield of xylobiose from xylose
Biochem. Biophys. Res. Commun., 501, 2018
7D38
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BU of 7d38 by Molmil
flavone reductase
分子名称: Cd1, FLAVIN MONONUCLEOTIDE, chrysin
著者Hong, S, Yang, G.H, Zhang, P.
登録日2020-09-18
公開日2021-03-03
実験手法X-RAY DIFFRACTION (2.649 Å)
主引用文献Discovery of an ene-reductase for initiating flavone and flavonol catabolism in gut bacteria.
Nat Commun, 12, 2021
7D39
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BU of 7d39 by Molmil
FLR-apo
分子名称: Cd1, FLAVIN MONONUCLEOTIDE
著者Hong, S, Yang, G.H, Zhang, P.
登録日2020-09-18
公開日2021-03-03
実験手法X-RAY DIFFRACTION (2.198 Å)
主引用文献Discovery of an ene-reductase for initiating flavone and flavonol catabolism in gut bacteria.
Nat Commun, 12, 2021
7D3B
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BU of 7d3b by Molmil
flavone reductase
分子名称: 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, Cd1, FLAVIN MONONUCLEOTIDE
著者Hong, S, Yang, G.H, Zhang, P.
登録日2020-09-18
公開日2021-03-03
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Discovery of an ene-reductase for initiating flavone and flavonol catabolism in gut bacteria.
Nat Commun, 12, 2021
7D3A
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BU of 7d3a by Molmil
flavone reductase
分子名称: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one, Cd1, FLAVIN MONONUCLEOTIDE
著者Hong, S, Yang, G.H, Zhang, P.
登録日2020-09-18
公開日2021-03-03
最終更新日2021-09-29
実験手法X-RAY DIFFRACTION (2.552 Å)
主引用文献Discovery of an ene-reductase for initiating flavone and flavonol catabolism in gut bacteria.
Nat Commun, 12, 2021
5UQ7
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BU of 5uq7 by Molmil
70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ("in" conformation)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Zhang, Y, Hong, S, Skiniotis, G, Dunham, C.M.
登録日2017-02-07
公開日2018-03-07
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Alternative Mode of E-Site tRNA Binding in the Presence of a Downstream mRNA Stem Loop at the Entrance Channel.
Structure, 26, 2018
6NTA
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BU of 6nta by Molmil
Modified ASL proline bound to Thermus thermophilus 70S (cognate)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Maehigashi, T, Subaramanian, S, Hong, S, Dunham, C.M.
登録日2019-01-28
公開日2020-10-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife, 9, 2020
6O3M
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BU of 6o3m by Molmil
Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Subaramanian, S, Hong, S, Maehigashi, T, Dunham, C.M.
登録日2019-02-26
公開日2020-10-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.97 Å)
主引用文献Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing.
Elife, 9, 2020

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件を2024-06-26に公開中

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