Search by PDB author - 日本蛋白質構造データバンク

English 日本語简体中文繁體中文 한국어

✖

ﾒﾆｭｰ

RCSB PDB PDBe BMRB Adv. Search Search help

Search by PDB author

Visualize

BU of 2nd5 by Molmil

Lysine dimethylated FKBP12
分子名称:	Peptidyl-prolyl cis-trans isomerase FKBP1A
著者	Hattori, Y, Sebera, J, Sychrovsky, V, Furuita, K, Sugiki, T, Ohki, I, Ikegami, T, Kobayashi, N, Tanaka, Y, Fujiwara, T, Kojima, C.
登録日	2016-05-05
公開日	2017-05-17
実験手法	SOLUTION NMR
主引用文献	NMR Observation of Protein Surface Salt Bridges at Neutral pH To be Published

Visualize

BU of 5ix7 by Molmil

Crystal structure of metallo-DNA nanowire with infinite one-dimensional silver array
分子名称:	DNA (5'-D(GPGPAPCPTP(CBR)PGPAPCPTPCPC)-3'), POTASSIUM ION, SILVER ION
著者	Kondo, J, Tada, Y, Dairaku, T, Hattori, Y, Saneyoshi, H, Ono, A, Tanaka, Y.
登録日	2016-03-23
公開日	2017-07-05
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (1.398 Å)
主引用文献	A metallo-DNA nanowire with uninterrupted one-dimensional silver array Nat Chem, 9, 2017

Visualize

BU of 3aw0 by Molmil

Structure of SARS 3CL protease with peptidic aldehyde inhibitor
分子名称:	3C-Like Proteinase, peptide ACE-SER-ALA-VAL-LEU-HIS-H
著者	Akaji, K, Konno, H, Mitsui, H, Teruya, K, Hattori, Y, Ozaki, T, Kusunoki, M, Sanjho, A.
登録日	2011-03-09
公開日	2011-12-14
最終更新日	2023-11-15
実験手法	X-RAY DIFFRACTION (2.3 Å)
主引用文献	Structure-Based Design, Synthesis, and Evaluation of Peptide-Mimetic SARS 3CL Protease Inhibitors. J.Med.Chem., 54, 2011

Visualize

BU of 3aw1 by Molmil

Structure of SARS 3CL protease auto-proteolysis resistant mutant in the absent of inhibitor
分子名称:	3C-Like Proteinase
著者	Akaji, K, Konno, H, Mitsui, H, Teruya, K, Hattori, Y, Ozaki, T, Kusunoki, M, Sanjho, A.
登録日	2011-03-09
公開日	2011-12-14
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Structure-Based Design, Synthesis, and Evaluation of Peptide-Mimetic SARS 3CL Protease Inhibitors. J.Med.Chem., 54, 2011

Visualize

BU of 3atw by Molmil

Structure-Based Design, Synthesis, Evaluation of Peptide-mimetic SARS 3CL Protease Inhibitors
分子名称:	3C-Like Proteinase, peptide ACE-THR-VAL-ALC-HIS-H
著者	Akaji, K, Konno, H, Mitsui, H, Teruya, K, Hattori, Y, Ozaki, T, Kusunoki, M, Sanjho, A.
登録日	2011-01-20
公開日	2011-12-14
最終更新日	2023-11-15
実験手法	X-RAY DIFFRACTION (2.36 Å)
主引用文献	Structure-Based Design, Synthesis, and Evaluation of Peptide-Mimetic SARS 3CL Protease Inhibitors. J.Med.Chem., 54, 2011

Visualize

BU of 3avz by Molmil

Structure of SARS 3CL protease with peptidic aldehyde inhibitor containing cyclohexyl side chain
分子名称:	3C-Like Proteinase, peptide ACE-SER-ALA-VAL-ALC-HIS-H
著者	Akaji, K, Konno, H, Mitsui, H, Teruya, K, Hattori, Y, Ozaki, T, Kusunoki, M, Sanjho, A.
登録日	2011-03-09
公開日	2011-12-14
最終更新日	2023-11-15
実験手法	X-RAY DIFFRACTION (2.46 Å)
主引用文献	Structure-Based Design, Synthesis, and Evaluation of Peptide-Mimetic SARS 3CL Protease Inhibitors. J.Med.Chem., 54, 2011

Visualize

BU of 7xw8 by Molmil

Crystal structure of Lysine Specific Demethylase 1 (LSD1) with TAK-418 distomer, FAD-adduct
分子名称:	GLYCEROL, Lysine-specific histone demethylase 1A, MAGNESIUM ION, ...
著者	Oki, H.
登録日	2022-05-26
公開日	2022-10-12
最終更新日	2023-11-29
実験手法	X-RAY DIFFRACTION (2.28 Å)
主引用文献	Design, synthesis, and structure-activity relationship of TAK-418 and its derivatives as a novel series of LSD1 inhibitors with lowered risk of hematological side effects. Eur.J.Med.Chem., 239, 2022

Visualize

BU of 4trw by Molmil

Structure of BACE1 complex with a syn-HEA-type inhibitor
分子名称:	Beta-secretase 1, L-alpha-glutamyl-L-isoleucyl-N-[(2R,3S)-1-{[(1S)-1-carboxybutyl]amino}-2-hydroxy-5-methylhexan-3-yl]-3-thiophen-2-yl-L-alaninamide
著者	Akaji, K, Teruya, K, Akiyama, T, Sanjho, A, Yamashita, E, Nakagawa, A.
登録日	2014-06-18
公開日	2015-07-01
最終更新日	2023-11-15
実験手法	X-RAY DIFFRACTION (2.85 Å)
主引用文献	Evaluation of transition-state mimics in a superior BACE1 cleavage sequence as peptide-mimetic BACE1 inhibitors Bioorg.Med.Chem., 23, 2015

Visualize

BU of 4trz by Molmil

Structure of BACE1 complex with 2-thiophenyl HEA-type inhibitor
分子名称:	2-thiophenyl HEA-type inhibitor, Beta-secretase 1
著者	Akaji, K, Teruya, K, Akiyama, T, Sanjho, A, Yamashita, E, Nakagawa, A.
登録日	2014-06-18
公開日	2015-07-01
最終更新日	2023-11-15
実験手法	X-RAY DIFFRACTION (3.25 Å)
主引用文献	Evaluation of transition-state mimics in a superior BACE1 cleavage sequence as peptide-mimetic BACE1 inhibitors Bioorg.Med.Chem., 23, 2015

Visualize

BU of 4tww by Molmil

Structure of SARS-3CL protease complex with a Bromobenzoyl (S,R)-N-decalin type inhibitor
分子名称:	(2S)-2-({[(3S,4aR,8aS)-2-(4-bromobenzoyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal, 3C-like proteinase
著者	Akaji, K, Teruya, K, Shimamoto, Y, Sanjho, A, Yamashita, E, Nakagawa, A.
登録日	2014-07-02
公開日	2015-02-18
最終更新日	2024-03-20
実験手法	X-RAY DIFFRACTION (2.42 Å)
主引用文献	Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors Bioorg.Med.Chem., 23, 2015

Visualize

BU of 4twy by Molmil

Structure of SARS-3CL protease complex with a phenylbenzoyl (S,R)-N-decalin type inhibitor
分子名称:	(2S)-2-({[(3S,4aR,8aS)-2-(biphenyl-4-ylcarbonyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal, 3C-like proteinase
著者	Akaji, K, Teruya, K, Shimamoto, Y, Sanjho, A, Yamashita, E, Nakagawa, A.
登録日	2014-07-02
公開日	2015-02-18
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.6 Å)
主引用文献	Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors Bioorg.Med.Chem., 23, 2015

Visualize

BU of 3gp7 by Molmil

Staphylococcal Enterotoxin B mutant N23YK97SK98S
分子名称:	Enterotoxin type B
著者	Yanaka, S, Tanaka, Y, Tsumoto, K.
登録日	2009-03-23
公開日	2010-03-09
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (1.9 Å)
主引用文献	Contribution of the flexible loop region to the function of staphylococcal enterotoxin B Protein Eng.Des.Sel., 23, 2010

Visualize

BU of 3nbt by Molmil

Crystal structure of trimeric cytochrome c from horse heart
分子名称:	Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者	Taketa, M, Komori, H, Hirota, S, Higuchi, Y.
登録日	2010-06-04
公開日	2010-07-14
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Cytochrome c polymerization by successive domain swapping at the C-terminal helix Proc.Natl.Acad.Sci.USA, 107, 2010

Visualize

BU of 3nbs by Molmil

Crystal structure of dimeric cytochrome c from horse heart
分子名称:	Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者	Taketa, M, Komori, H, Hirota, S, Higuchi, Y.
登録日	2010-06-04
公開日	2010-07-14
最終更新日	2023-11-01
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Cytochrome c polymerization by successive domain swapping at the C-terminal helix Proc.Natl.Acad.Sci.USA, 107, 2010

Visualize

BU of 2ruj by Molmil

Solution structure of MTSL spin-labeled Schizosaccharomyces pombe Sin1 CRIM domain
分子名称:	Stress-activated map kinase-interacting protein 1
著者	Furuita, K, Kataoka, S, Sugiki, T, Kobayashi, N, Ikegami, T, Shiozaki, K, Fujiwara, T, Kojima, C.
登録日	2014-07-24
公開日	2015-07-29
実験手法	SOLUTION NMR
主引用文献	Utilization of paramagnetic relaxation enhancements for high-resolution NMR structure determination of a soluble loop-rich protein with sparse NOE distance restraints J.Biomol.Nmr, 61, 2015

Visualize

BU of 4wy3 by Molmil

Structure of SARS-3CL protease complex with a phenylbenzoyl (R,S)-N-decalin type inhibitor
分子名称:	(2S)-2-({[(3R,4aS,8aR)-2-(biphenyl-4-ylcarbonyl)decahydroisoquinolin-3-yl]methyl}amino)-3-(1H-imidazol-5-yl)propanal, 3C-like proteinase
著者	Akaji, K, Teruya, K, Shimamoto, Y, Sanjho, A, Yamashita, E, Nakagawa, A.
登録日	2014-11-15
公開日	2015-02-18
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.89 Å)
主引用文献	Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors. Bioorg.Med.Chem., 23, 2015

Visualize

BU of 7e0g by Molmil

Crystal structure of Lysine Specific Demethylase 1 (LSD1) with TAK-418, FAD-adduct
分子名称:	GLYCEROL, IMIDAZOLE, Lysine-specific histone demethylase 1A, ...
著者	Oki, H.
登録日	2021-01-28
公開日	2021-03-24
最終更新日	2023-11-29
実験手法	X-RAY DIFFRACTION (2.25 Å)
主引用文献	LSD1 enzyme inhibitor TAK-418 unlocks aberrant epigenetic machinery and improves autism symptoms in neurodevelopmental disorder models. Sci Adv, 7, 2021

223166

件を2024-07-31に公開中

PDB statistics

PDBj update info

Contact PDBj

numon