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5V3I
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BU of 5v3i by Molmil
Crystal structure of the VS ribozyme - wild-type C634
分子名称: VS Ribozyme RNA
著者DasGupta, S, Suslov, N.B, Piccirilli, J.A.
登録日2017-03-07
公開日2017-07-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.293 Å)
主引用文献Structural Basis for Substrate Helix Remodeling and Cleavage Loop Activation in the Varkud Satellite Ribozyme.
J. Am. Chem. Soc., 139, 2017
6B3K
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BU of 6b3k by Molmil
Crystal structure of mutant Spinach RNA aptamer in complex with Fab BL3-6
分子名称: Heavy chain of Fab BL3-6, Light chain of Fab BL3-6, MAGNESIUM ION, ...
著者DasGupta, S, Koirala, D, Shelke, S.A, Piccirilli, J.A.
登録日2017-09-22
公開日2017-12-27
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography.
Nucleic Acids Res., 46, 2018
6B14
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BU of 6b14 by Molmil
Crystal structure of Spinach RNA aptamer in complex with Fab BL3-6S97N
分子名称: Heavy chain of Fab BL3-6S97N, Light chain of Fab BL3-6S97N, MAGNESIUM ION, ...
著者DasGupta, S, Shelke, S.A, Piccirilli, J.A.
登録日2017-09-16
公開日2017-12-27
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Affinity maturation of a portable Fab-RNA module for chaperone-assisted RNA crystallography.
Nucleic Acids Res., 46, 2018
8I9I
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BU of 8i9i by Molmil
Glutamyl-tRNA synthetase from Escherichia Coli bound to Glutamate and Zinc
分子名称: GLUTAMIC ACID, Glutamate--tRNA ligase, ZINC ION
著者Dev, A, Chongdar, N, Dasgupta, S, Basu, G.
登録日2023-02-07
公開日2023-04-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Escherichia coli GluRS
To Be Published
4R4P
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BU of 4r4p by Molmil
Crystal Structure of the VS ribozyme-A756G mutant
分子名称: MAGNESIUM ION, VS ribozyme RNA
著者Piccirilli, J.A, Suslov, N.B, Dasgupta, S, Huang, H, Lilley, D.M.J, Rice, P.A.
登録日2014-08-19
公開日2015-09-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.07 Å)
主引用文献Crystal structure of the Varkud satellite ribozyme.
Nat.Chem.Biol., 11, 2015
4R4V
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BU of 4r4v by Molmil
Crystal structure of the VS ribozyme - G638A mutant
分子名称: MAGNESIUM ION, POTASSIUM ION, VS ribozyme RNA
著者Piccirilli, J.A, Suslov, N.B, Dasgupta, S, Huang, H, Lilley, D.M.J, Rice, P.A.
登録日2014-08-19
公開日2015-09-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.07 Å)
主引用文献Crystal structure of the Varkud satellite ribozyme.
Nat.Chem.Biol., 11, 2015
4PTT
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BU of 4ptt by Molmil
Crystal Structure of anti-23F strep Fab C05
分子名称: ACETATE ION, Antibody pn132p2C05, heavy chain, ...
著者Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Smith, K, Schrader, J.W, Pai, E.F.
登録日2014-03-11
公開日2015-03-11
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016
4PTU
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BU of 4ptu by Molmil
Crystal Structure of anti-23F strep Fab C05 with rhamnose
分子名称: ACETATE ION, Antibody pn132p2C05, heavy chain, ...
著者Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Smith, K, Schrader, J.W, Pai, E.F.
登録日2014-03-11
公開日2015-03-04
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.511 Å)
主引用文献Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016
8Z2W
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BU of 8z2w by Molmil
Crystal structure of apo- exo-beta-(1,3)-glucanase from Aspergillus oryzae (AoBgl)
分子名称: 2-methylpropylphosphonic acid, Glucan 1,3-beta-glucosidase A, SODIUM ION
著者Banerjee, B, Kamale, C.K, Suryawanshi, A.B, Bhaumik, P.
登録日2024-04-13
公開日2024-11-06
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structures of Aspergillus oryzae exo-beta-(1,3)-glucanase reveal insights into oligosaccharide binding, recognition, and hydrolysis.
Febs Lett., 2024
8Z2X
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BU of 8z2x by Molmil
Crystal structure of exo-beta-(1,3)-glucanase from Aspergillus oryzae (AoBgl) as a complex with cellobiose
分子名称: Glucan 1,3-beta-glucosidase A, SODIUM ION, beta-D-glucopyranose, ...
著者Banerjee, B, Kamale, C.K, Suryawanshi, A.B, Bhaumik, P.
登録日2024-04-13
公開日2024-11-06
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal structures of Aspergillus oryzae exo-beta-(1,3)-glucanase reveal insights into oligosaccharide binding, recognition, and hydrolysis.
Febs Lett., 2024
8Z2Y
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BU of 8z2y by Molmil
High-resolution crystal structure of exo-beta-(1,3)-glucanase from Aspergillus oryzae (AoBgl) as a complex with glucose
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
著者Banerjee, B, Kamale, C.K, Suryawanshi, A.B, Bhaumik, P.
登録日2024-04-13
公開日2024-11-06
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structures of Aspergillus oryzae exo-beta-(1,3)-glucanase reveal insights into oligosaccharide binding, recognition, and hydrolysis.
Febs Lett., 2024
4HIH
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BU of 4hih by Molmil
Anti-Streptococcus pneumoniae 23F Fab 023.102 with bound rhamnose.
分子名称: Antibody 023.102, Fab 023.102, alpha-L-rhamnopyranose
著者Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Schrader, J.W, Pai, E.F.
登録日2012-10-11
公開日2013-08-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016
6XJY
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BU of 6xjy by Molmil
Crystal structure of a self-alkylating ribozyme - short time incubation with the epoxide substrate
分子名称: Fab HAVx Heavy Chain, Fab HAVx Light Chain, Self-alkylating ribozyme (58-MER)
著者Koirala, D, Piccirilli, J.A.
登録日2020-06-24
公開日2022-01-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.156 Å)
主引用文献Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.
Nat.Chem.Biol., 18, 2022
6XJQ
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BU of 6xjq by Molmil
Crystal structure of a self-alkylating ribozyme - alkylated form with biotinylated epoxide substrate
分子名称: 2-{[(4R)-4-hydroxyhexyl]oxy}ethyl 5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate, Fab HAVx Heavy Chain, Fab HAVx Light Chain, ...
著者Koirala, D, Piccirilli, J.A.
登録日2020-06-24
公開日2022-01-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.708 Å)
主引用文献Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.
Nat.Chem.Biol., 18, 2022
6XJZ
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BU of 6xjz by Molmil
Crystal structure of a self-alkylating ribozyme - apo form
分子名称: Fab HAVx Heavy Chain, Fab HAVx Light Chain, Self-alkylating ribozyme (58-MER)
著者Koirala, D, Piccirilli, J.A.
登録日2020-06-24
公開日2022-01-19
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.488 Å)
主引用文献Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.
Nat.Chem.Biol., 18, 2022
6XJW
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BU of 6xjw by Molmil
Crystal structure of a self-alkylating ribozyme - alkylated form without biotin moiety
分子名称: 2-{[(4R)-4-hydroxyhexyl]oxy}ethyl pentanoate, Fab HAVx Heavy Chain, Fab HAVx Light Chain, ...
著者Koirala, D, Piccirilli, J.A.
登録日2020-06-24
公開日2022-01-19
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.918 Å)
主引用文献Structural basis for substrate binding and catalysis by a self-alkylating ribozyme.
Nat.Chem.Biol., 18, 2022
4HHA
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BU of 4hha by Molmil
Anti-Human Cytomegalovirus (HCMV) Fab KE5 with epitope peptide AD-2S1
分子名称: Antibody KE5, CHLORIDE ION, Fab KE5, ...
著者Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Pfoh, R, Schrader, J.W, Pai, E.F.
登録日2012-10-09
公開日2013-10-23
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016
4HH9
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BU of 4hh9 by Molmil
Anti-Human Cytomegalovirus (HCMV) Fab KE5
分子名称: Fab KE5, heavy chain, light chain
著者Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Pfoh, R, Schrader, J.W, Pai, E.F.
登録日2012-10-09
公開日2013-10-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016
4HIE
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BU of 4hie by Molmil
Anti-Streptococcus pneumoniae 23F Fab 023.102
分子名称: Antibody 023.102, Fab 023.102
著者Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Schrader, J.W, Pai, E.F.
登録日2012-10-11
公開日2013-08-28
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016
4HIJ
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BU of 4hij by Molmil
Anti-Streptococcus pneumoniae 23F Fab 023.102 with bound L-rhamnose-(1-2)-alpha-D-galactose-(3-O)-phosphate-2-glycerol
分子名称: Fab 023.102 heavy chain, Fab 023.102 light chain, GLYCEROL, ...
著者Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Schrader, J.W, Pai, E.F.
登録日2012-10-11
公開日2013-08-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016
4HII
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BU of 4hii by Molmil
Anti-Streptococcus pneumoniae 23F Fab 023.102 with bound rhamnose-galactose
分子名称: Fab 023.102 heavy chain, Fab 023.102 light chain, alpha-L-rhamnopyranose-(1-2)-beta-D-galactopyranose
著者Bryson, S, Risnes, L, Damgupta, S, Thomson, C.A, Schrader, J.W, Pai, E.F.
登録日2012-10-11
公開日2013-08-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of Preferred Human IgV Genes-Based Protective Antibodies Identify How Conserved Residues Contact Diverse Antigens and Assign Source of Specificity to CDR3 Loop Variation.
J. Immunol., 196, 2016
6MIH
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BU of 6mih by Molmil
Crystal structure of host-guest complex with PC hachimoji DNA
分子名称: DNA (5'-D(*CP*TP*TP*AP*(1WA)P*CP*(DB)P*T)-3'), DNA (5'-D(P*AP*(DS)P*GP*(1W5)P*TP*AP*AP*G)-3'), N-terminal fragment of MMLV reverse transcriptase
著者Georgiadis, M.M.
登録日2018-09-19
公開日2019-02-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Hachimoji DNA and RNA: A genetic system with eight building blocks.
Science, 363, 2019
6MIK
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Crystal structure of host-guest complex with PP hachimoji DNA
分子名称: DNA (5'-D(*CP*TP*TP*AP*TP*(1WA)P*(1WA)P*(DS))-3'), DNA (5'-D(P*(DB)P*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3'), N-terminal fragment of MMLV reverse transcriptase
著者Georgiadis, M.M.
登録日2018-09-19
公開日2019-02-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Hachimoji DNA and RNA: A genetic system with eight building blocks.
Science, 363, 2019
6MIG
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Crystal structure of host-guest complex with PB hachimoji DNA
分子名称: DNA (5'-D(*CP*TP*TP*AP*TP*(1WA)P*(1WA)P*(DS))-3'), DNA (5'-D(P*(DB)P*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3'), Gag-Pol polyprotein
著者Georgiadis, M.M.
登録日2018-09-19
公開日2019-02-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Hachimoji DNA and RNA: A genetic system with eight building blocks.
Science, 363, 2019
2G8Q
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BU of 2g8q by Molmil
The crystal structure of RNase A from monoclinic crystals at 100 K
分子名称: Ribonuclease pancreatic
著者Leonidas, D.D, Zographos, S.E, Oikonomakos, N.G.
登録日2006-03-03
公開日2006-08-15
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The binding of 3'-N-piperidine-4-carboxyl-3'-deoxy-ara-uridine to ribonuclease A in the crystal.
Bioorg.Med.Chem., 14, 2006

 

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