1BVE
| HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES | 分子名称: | HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE | 著者 | Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S. | 登録日 | 1996-01-16 | 公開日 | 1996-08-17 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy. Protein Sci., 5, 1996
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1BVG
| HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE | 分子名称: | HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE | 著者 | Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S. | 登録日 | 1996-01-16 | 公開日 | 1996-08-17 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy. Protein Sci., 5, 1996
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1JU8
| Solution structure of Leginsulin, a plant hormon | 分子名称: | Leginsulin | 著者 | Yamazaki, T, Takaoka, M, Katoh, E, Hanada, K, Sakita, M, Sakata, K, Nishiuchi, Y, Hirano, H. | 登録日 | 2001-08-23 | 公開日 | 2003-06-17 | 最終更新日 | 2022-02-23 | 実験手法 | SOLUTION NMR | 主引用文献 | A possible physiological function and the tertiary structure of a 4-kDa peptide in legumes EUR.J.BIOCHEM., 270, 2003
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1RCH
| SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES | 分子名称: | RIBONUCLEASE HI | 著者 | Yamazaki, T, Fujiwara, M, Kato, T, Yamasaki, K, Nagayama, K. | 登録日 | 1995-06-23 | 公開日 | 1997-02-12 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution Structure of Ribonuclease Hi from Escherichia Coli Biol.Pharm.Bull., 23, 2000
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1C9F
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1IRZ
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1AYG
| SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES | 分子名称: | CYTOCHROME C-552, HEME C | 著者 | Hasegawa, J, Yoshida, T, Yamazaki, T, Sambongi, Y, Yu, Y, Igarashi, Y, Kodama, T, Yamazaki, K, Hakusui, H, Kyogoku, Y, Kobayashi, Y. | 登録日 | 1997-11-04 | 公開日 | 1998-11-25 | 最終更新日 | 2022-02-16 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy. Biochemistry, 37, 1998
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8XZ2
| The structural model of a homodimeric D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria | 分子名称: | D-alanyl-D-alanine dipeptidase | 著者 | Konuma, T, Takai, T, Tsuchiya, C, Nishida, M, Hashiba, M, Yamada, Y, Shirai, H, Motoda, Y, Nagadoi, A, Chikaishi, E, Akagi, K, Akashi, S, Yamazaki, T, Akutsu, H, Oe, A, Ikegami, T. | 登録日 | 2024-01-20 | 公開日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Analysis of the homodimeric structure of a D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria. Protein Sci., 33, 2024
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7D2O
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2PLE
| NUCLEAR MAGNETIC RESONANCE STRUCTURE OF AN SH2 DOMAIN OF PHOSPHOLIPASE C-GAMMA1 COMPLEXED WITH A HIGH AFFINITY BINDING PEPTIDE | 分子名称: | PHOSPHOLIPASE C GAMMA-1, C-TERMINAL SH2 DOMAIN, PHOSPHOPEPTIDE FROM PDGF | 著者 | Pascal, S.M, Singer, A.U, Gish, G, Yamazaki, T, Shoelson, S.E, Pawson, T, Kay, L.E, Forman-Kay, J.D. | 登録日 | 1994-08-19 | 公開日 | 1995-01-26 | 最終更新日 | 2017-11-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Nuclear magnetic resonance structure of an SH2 domain of phospholipase C-gamma 1 complexed with a high affinity binding peptide. Cell(Cambridge,Mass.), 77, 1994
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2PLD
| NUCLEAR MAGNETIC RESONANCE STRUCTURE OF AN SH2 DOMAIN OF PHOSPHOLIPASE C-GAMMA1 COMPLEXED WITH A HIGH AFFINITY BINDING PEPTIDE | 分子名称: | PHOSPHOLIPASE C GAMMA-1, C-TERMINAL SH2 DOMAIN, PHOSPHOPEPTIDE FROM PDGF | 著者 | Pascal, S.M, Singer, A.U, Gish, G, Yamazaki, T, Shoelson, S.E, Pawson, T, Kay, L.E, Forman-Kay, J.D. | 登録日 | 1994-08-19 | 公開日 | 1995-01-26 | 最終更新日 | 2017-11-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Nuclear magnetic resonance structure of an SH2 domain of phospholipase C-gamma 1 complexed with a high affinity binding peptide. Cell(Cambridge,Mass.), 77, 1994
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1C4L
| SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR | 分子名称: | RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3') | 著者 | Tanaka, Y, Kojima, C, Yamazaki, T, Kodama, T.S, Yasuno, K, Miyashita, S, Ono, A.M, Ono, A.S, Kainosho, M, Kyogoku, Y. | 登録日 | 1999-08-30 | 公開日 | 2000-08-09 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of an RNA duplex including a C-U base pair. Biochemistry, 39, 2000
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1DCJ
| SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION | 分子名称: | YHHP PROTEIN | 著者 | Katoh, E, Hatta, T, Shindo, H, Mizuno, T, Yamazaki, T. | 登録日 | 1999-11-05 | 公開日 | 2001-07-18 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division. J.Mol.Biol., 304, 2000
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2RQF
| Solution structure of juvenile hormone binding protein from silkworm in complex with JH III | 分子名称: | Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate | 著者 | Suzuki, R, Fujimoto, Z, Shiotsuki, T, Momma, M, Tase, A, Yamazaki, T. | 登録日 | 2009-04-27 | 公開日 | 2010-05-05 | 最終更新日 | 2013-06-19 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori Sci Rep, 1, 2011
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1BXD
| NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ | 分子名称: | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ)) | 著者 | Tanaka, T, Saha, S.K, Tomomori, C, Ishima, R, Liu, D, Tong, K.I, Park, H, Dutta, R, Qin, L, Swindells, M.B, Yamazaki, T, Ono, A.M, Kainosho, M, Inouye, M, Ikura, M. | 登録日 | 1998-10-02 | 公開日 | 1999-10-02 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ. Nature, 396, 1998
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1F2R
| NMR STRUCTURE OF THE HETERODIMERIC COMPLEX BETWEEN CAD DOMAINS OF CAD AND ICAD | 分子名称: | CASPASE-ACTIVATED DNASE, INHIBITOR OF CASPASE-ACTIVATED DNASE | 著者 | Otomo, T, Sakahira, H, Uegaki, K, Nagata, S, Yamazaki, T. | 登録日 | 2000-05-29 | 公開日 | 2000-06-08 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of the heterodimeric complex between CAD domains of CAD and ICAD. Nat.Struct.Biol., 7, 2000
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3A1Z
| Crystal structure of juvenile hormone binding protein from silkworm | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Hemolymph juvenile hormone binding protein, ZINC ION | 著者 | Suzuki, R, Fujimoto, Z, Shiotsuki, T, Momma, M, Tase, A, Yamazaki, T. | 登録日 | 2009-04-27 | 公開日 | 2010-04-28 | 最終更新日 | 2017-03-15 | 実験手法 | X-RAY DIFFRACTION (2.59 Å) | 主引用文献 | Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP Plos One, 8, 2013
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3AOS
| Crystal structure of juvenile hormone binding protein from silkworm in complex with JH II | 分子名称: | Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R,3S)-3-ethyl-3-methyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate | 著者 | Fujimoto, Z, Suzuki, R, Shiotsuki, T, Momma, M, Yamazaki, T. | 登録日 | 2010-10-06 | 公開日 | 2011-10-12 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori Sci Rep, 1, 2011
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3AOT
| Crystal structure of juvenile hormone binding protein from silkworm in its apo form | 分子名称: | DI(HYDROXYETHYL)ETHER, Hemolymph juvenile hormone binding protein, TETRAETHYLENE GLYCOL, ... | 著者 | Fujimoto, Z, Suzuki, R, Shiotsuki, T, Momma, M, Yamazaki, T. | 登録日 | 2010-10-06 | 公開日 | 2011-10-12 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori. Sci Rep, 1, 2011
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6M0Q
| Hydroxylamine oxidoreductase from Nitrosomonas europaea | 分子名称: | Aerobic hydroxylamine oxidoreductase, DI(HYDROXYETHYL)ETHER, HEME C, ... | 著者 | Fujiwara, T, Fujimoto, Z, Nishigaya, Y, Yamazaki, T. | 登録日 | 2020-02-22 | 公開日 | 2021-03-10 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | Juglone, a plant-derived 1,4-naphthoquinone, binds to hydroxylamine oxidoreductase and inhibits the electron transfer to cytochrome c 554. Appl.Environ.Microbiol., 89, 2023
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6M0P
| Hydroxylamine oxidoreductase in complex with juglone | 分子名称: | 5-hydroxynaphthalene-1,4-dione, Aerobic hydroxylamine oxidoreductase, DI(HYDROXYETHYL)ETHER, ... | 著者 | Fujiwara, T, Fujimoto, Z, Nishigaya, Y, Yamazaki, T. | 登録日 | 2020-02-22 | 公開日 | 2021-03-10 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (2.78 Å) | 主引用文献 | Juglone, a plant-derived 1,4-naphthoquinone, binds to hydroxylamine oxidoreductase and inhibits the electron transfer to cytochrome c 554. Appl.Environ.Microbiol., 89, 2023
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2RS2
| 1H, 13C, and 15N Chemical Shift Assignments for Musashi1 RBD1:r(GUAGU) complex | 分子名称: | RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1 | 著者 | Ohyama, T, Nagata, T, Tsuda, K, Imai, T, Okano, H, Yamazaki, T, Katahira, M. | 登録日 | 2011-06-27 | 公開日 | 2011-12-28 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions Nucleic Acids Res., 2011
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1K2G
| Structural basis for the 3'-terminal guanosine recognition by the group I intron | 分子名称: | 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3' | 著者 | Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S. | 登録日 | 2001-09-27 | 公開日 | 2002-05-08 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron. RNA, 8, 2002
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1IY6
| Solution structure of OMSVP3 variant, P14C/N39C | 分子名称: | OMSVP3 | 著者 | Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y. | 登録日 | 2002-07-23 | 公開日 | 2003-03-11 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond BIOCHEMISTRY, 42, 2003
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1IY5
| Solution structure of wild type OMSVP3 | 分子名称: | OMSVP3 | 著者 | Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y. | 登録日 | 2002-07-23 | 公開日 | 2003-03-11 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond BIOCHEMISTRY, 42, 2003
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