1H0M
| Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA | 分子名称: | 3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE, 5'-D(*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP *CP*TP*GP*CP*AP*CP*AP*T)-3', Transcriptional activator protein TraR | 著者 | Vannini, A, Volpari, C, Gargioli, C, Muraglia, E, Cortese, R, De Francesco, R, Neddermann, P, Di Marco, S. | 登録日 | 2002-06-25 | 公開日 | 2002-08-29 | 最終更新日 | 2020-12-16 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | The Crystal Structure of the Quorum Sensing Protein Trar Bound to its Autoinducer and Target DNA Embo J., 21, 2002
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1UPG
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1US6
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1W22
| Crystal structure of inhibited human HDAC8 | 分子名称: | HISTONE DEACETYLASE 8, N-HYDROXY-4-(METHYL{[5-(2-PYRIDINYL)-2-THIENYL]SULFONYL}AMINO)BENZAMIDE, POTASSIUM ION, ... | 著者 | Vannini, A, Volpari, C, Caroli Casavola, E, Di Marco, S. | 登録日 | 2004-06-25 | 公開日 | 2004-09-24 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Crystal Structure of a Eukaryotic Zn-Dependent Histone Deacetylase,Human Hdac8,Complexed with a Hydroxamic Acid Inhibitor Proc.Natl.Acad.Sci.USA, 101, 2004
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7ASU
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3M1M
| Crystal structure of the primase-polymerase from Sulfolobus islandicus | 分子名称: | GLYCEROL, ORF904, SULFATE ION, ... | 著者 | Vannini, A, Beck, K, Lipps, G, Cramer, P. | 登録日 | 2010-03-05 | 公開日 | 2010-06-16 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | The archaeo-eukaryotic primase of plasmid pRN1 requires a helix bundle domain for faithful primer synthesis Nucleic Acids Res., 38, 2010
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3NR5
| Crystal structure of human Maf1 | 分子名称: | Repressor of RNA polymerase III transcription MAF1 homolog | 著者 | Ringel, R, Vannini, A, Kusser, A.G, Berninghausen, O, Kassavetis, G.A, Cramer, P. | 登録日 | 2010-06-30 | 公開日 | 2010-10-13 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Molecular Basis of RNA Polymerase III Transcription Repression by Maf1 Cell(Cambridge,Mass.), 143, 2010
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2V5W
| Crystal structure of HDAC8-substrate complex | 分子名称: | GLYCYL-GLYCYL-GLYCINE, HISTONE DEACETYLASE 8, PEPTIDIC SUBSTRATE, ... | 著者 | Di Marco, S, Vannini, A, Volpari, C. | 登録日 | 2007-07-10 | 公開日 | 2007-09-04 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Substrate Binding to Histone Deacetylases as Revealed by Crystal Structure of Hdac8-Substrate Complex Embo Rep., 8, 2007
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2V5X
| Crystal structure of HDAC8-inhibitor complex | 分子名称: | (2R)-N~8~-HYDROXY-2-{[(5-METHOXY-2-METHYL-1H-INDOL-3-YL)ACETYL]AMINO}-N~1~-[2-(2-PHENYL-1H-INDOL-3-YL)ETHYL]OCTANEDIAMIDE, HISTONE DEACETYLASE 8, POTASSIUM ION, ... | 著者 | Di Marco, S, Vannini, A, Volpari, C, Gallinari, P, Jones, P, Mattu, M, Carfi, A, Defrancesco, R, Steinkuhler, C. | 登録日 | 2007-07-10 | 公開日 | 2007-09-04 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | 主引用文献 | Substrate Binding to Histone Deacetylases as Revealed by Crystal Structure of Hdac8-Substrate Complex Embo Rep., 8, 2007
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7ASV
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4ROD
| Human TFIIB-related factor 2 (Brf2) and TBP bound to TRNAU1 promoter | 分子名称: | Non-template strand, TATA-box-binding protein, Template strand, ... | 著者 | Vannini, A, Gouge, J, Satia, K, Guthertz, N. | 登録日 | 2014-10-28 | 公開日 | 2015-12-30 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2. Cell(Cambridge,Mass.), 163, 2015
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4ROC
| Human TFIIB-related factor 2 (Brf2) and TBP bound to U6#2 promoter | 分子名称: | MAGNESIUM ION, Non-template strand, TATA-box-binding protein, ... | 著者 | Vannini, A, Gouge, J, Satia, K, Guthertz, N. | 登録日 | 2014-10-28 | 公開日 | 2015-12-30 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2. Cell(Cambridge,Mass.), 163, 2015
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4ROE
| Human TFIIB-related factor 2 (Brf2) and TBP bound to RPPH1 promoter | 分子名称: | MAGNESIUM ION, Non-template strand, TATA-box-binding protein, ... | 著者 | Vannini, A, Gouge, J, Satia, K, Guthertz, N. | 登録日 | 2014-10-28 | 公開日 | 2015-12-30 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2. Cell(Cambridge,Mass.), 163, 2015
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8A43
| Human RNA polymerase I | 分子名称: | DNA-directed RNA polymerase I subunit RPA1, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA2, ... | 著者 | Daiss, J.L, Pilsl, M, Straub, K, Bleckmann, A, Hoecherl, M, Heiss, F.B, Abascal-Palacios, G, Ramsay, E, Tluckova, K, Mars, J.C, Fuertges, T, Bruckmann, A, Rudack, T, Bernecky, C, Lamour, V, Panov, K, Vannini, A, Moss, T, Engel, C. | 登録日 | 2022-06-10 | 公開日 | 2022-08-31 | 最終更新日 | 2022-11-02 | 実験手法 | ELECTRON MICROSCOPY (4.09 Å) | 主引用文献 | The human RNA polymerase I structure reveals an HMG-like docking domain specific to metazoans. Life Sci Alliance, 5, 2022
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7Q5B
| Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene | 分子名称: | DNA (19-MER), DNA (31-MER), DNA (34-MER), ... | 著者 | Abascal-Palacios, G, Jochem, L, Pla-Prats, C, Beuron, F, Vannini, A. | 登録日 | 2021-11-03 | 公開日 | 2022-01-26 | 実験手法 | ELECTRON MICROSCOPY (3.98 Å) | 主引用文献 | Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes. Nat Commun, 12, 2021
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7ZWD
| Structure of SNAPc containing Pol II pre-initiation complex bound to U5 snRNA promoter (CC) | 分子名称: | DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... | 著者 | Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. | 登録日 | 2022-05-19 | 公開日 | 2022-11-30 | 最終更新日 | 2024-07-24 | 実験手法 | ELECTRON MICROSCOPY (3 Å) | 主引用文献 | Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
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7ZX7
| Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (CC) | 分子名称: | DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... | 著者 | Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. | 登録日 | 2022-05-20 | 公開日 | 2022-11-30 | 最終更新日 | 2024-07-24 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
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7ZXE
| Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC) | 分子名称: | Non-template strand, TATA-box-binding protein, Template strand, ... | 著者 | Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. | 登録日 | 2022-05-20 | 公開日 | 2022-11-30 | 最終更新日 | 2024-07-24 | 実験手法 | ELECTRON MICROSCOPY (3.5 Å) | 主引用文献 | Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
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7ZX8
| Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC) | 分子名称: | DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB3, ... | 著者 | Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. | 登録日 | 2022-05-20 | 公開日 | 2022-12-07 | 最終更新日 | 2024-07-24 | 実験手法 | ELECTRON MICROSCOPY (3 Å) | 主引用文献 | Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
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5N9G
| TFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1- | 分子名称: | DNA/RNA (25-MER), DNA/RNA (27-MER), SODIUM ION, ... | 著者 | Gouge, J, Vannini, A, Guthertz, N. | 登録日 | 2017-02-24 | 公開日 | 2017-06-14 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation. Nat Commun, 8, 2017
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7ZWC
| Structure of SNAPc:TBP-TFIIA-TFIIB sub-complex bound to U5 snRNA promoter | 分子名称: | Non-template strand, TATA-box-binding protein, Template strand, ... | 著者 | Rengachari, S, Schilbach, S, Kaliyappan, T, Gouge, J, Zumer, K, Schwarz, J, Urlaub, H, Dienemann, C, Vannini, A, Cramer, P. | 登録日 | 2022-05-19 | 公開日 | 2022-11-30 | 最終更新日 | 2024-07-24 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II. Nat.Struct.Mol.Biol., 29, 2022
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7AST
| Apo Human RNA Polymerase III | 分子名称: | DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... | 著者 | Ramsay, E.P, Abascal-Palacios, G, Daiss, J.L, King, H, Gouge, J, Pilsl, M, Beuron, F, Morris, E, Gunkel, P, Engel, C, Vannini, A. | 登録日 | 2020-10-28 | 公開日 | 2020-12-23 | 最終更新日 | 2020-12-30 | 実験手法 | ELECTRON MICROSCOPY (4 Å) | 主引用文献 | Structure of human RNA polymerase III. Nat Commun, 11, 2020
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6EU3
| Apo RNA Polymerase III - closed conformation (cPOL3) | 分子名称: | DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... | 著者 | Abascal-Palacios, G, Ramsay, E.P, Beuron, F, Morris, E, Vannini, A. | 登録日 | 2017-10-27 | 公開日 | 2018-01-17 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (3.3 Å) | 主引用文献 | Structural basis of RNA polymerase III transcription initiation. Nature, 553, 2018
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6EU1
| RNA Polymerase III - open DNA complex (OC-POL3). | 分子名称: | DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... | 著者 | Abascal-Palacios, G, Ramsay, E.P, Beuron, F, Morris, E, Vannini, A. | 登録日 | 2017-10-27 | 公開日 | 2018-01-17 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | 主引用文献 | Structural basis of RNA polymerase III transcription initiation. Nature, 553, 2018
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6EU0
| RNA Polymerase III open pre-initiation complex (OC-PIC) | 分子名称: | DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... | 著者 | Abascal-Palacios, G, Ramsay, E.P, Beuron, F, Morris, E, Vannini, A. | 登録日 | 2017-10-27 | 公開日 | 2018-01-17 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (4 Å) | 主引用文献 | Structural basis of RNA polymerase III transcription initiation. Nature, 553, 2018
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