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3APY
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BU of 3apy by Molmil
Properties and crystal structure of methylenetetrahydrofolate reductase from Thermus thermophilus HB8
分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Methylenetetrahydrofolate reductase
著者Yamada, K.
登録日2010-10-21
公開日2011-09-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Properties and Crystal Structure of Methylenetetrahydrofolate Reductase from Thermus thermophilus HB8.
Plos One, 6, 2011
3AUN
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BU of 3aun by Molmil
Crystal structure of the rat vitamin D receptor ligand binding domain complexed with YR335 and a synthetic peptide containing the NR2 box of DRIP 205
分子名称: (2R)-2-{4-[3-(4-{[(2R)-2-hydroxy-3,3-dimethylbutyl]oxy}-3-methylphenyl)pentan-3-yl]-2-methylphenoxy}butane-1,4-diol, DRIP 205 NR2 box peptide, Vitamin D3 receptor
著者Kakuda, S, Takimoto-Kamimura, M.
登録日2011-02-10
公開日2012-02-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Design, synthesis and X-ray crystallographic study of new nonsecosteroidal vitamin D receptor ligands
Bioorg.Med.Chem.Lett., 21, 2011
5YE4
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BU of 5ye4 by Molmil
Crystal structure of the complex of di-acetylated histone H4 and 1A9D7 Fab fragment
分子名称: 1A9D7 L chain, 1A9D7 VH CH1 chain, ZINC ION, ...
著者Matsuda, T, Ito, T, Wakamori, M, Umehara, T.
登録日2017-09-15
公開日2018-08-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.799 Å)
主引用文献JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.
Epigenetics, 13, 2018
5YE3
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Crystal structure of the complex of di-acetylated histone H4 and 2A7D9 Fab fragment
分子名称: 2A7D9 L chain, 2A7D9 VH CH1 chain, di-acetylated histone H4
著者Matsuda, T, Ito, T, Wakamori, M, Umehara, T.
登録日2017-09-15
公開日2018-08-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states.
Epigenetics, 13, 2018
3VLC
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BU of 3vlc by Molmil
Crystal structure of S. cerevisiae Get3 in the semi open conformation in complex with Get1 cytosolic domain at 4.5 angstrom resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase GET3, Golgi to ER traffic protein 1
著者Kubota, K, Yamagata, A, Fukai, S.
登録日2011-11-30
公開日2012-06-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (4.5 Å)
主引用文献Get1 stabilizes an open dimer conformation of get3 ATPase by binding two distinct interfaces
J.Mol.Biol., 422, 2012
5Z8Y
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Crystal structure of human LRRTM2 in complex with Neurexin 1beta
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Yamagata, A, Fukai, S.
登録日2018-02-01
公開日2018-10-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction.
Nat Commun, 9, 2018
5Z8X
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Crystal structure of human LRRTM2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat transmembrane neuronal protein 2
著者Yamagata, A, Fukai, S.
登録日2018-02-01
公開日2018-10-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural insights into modulation and selectivity of transsynaptic neurexin-LRRTM interaction.
Nat Commun, 9, 2018
5Y32
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Crystal structure of PTP delta Ig1-Ig2 in complex with IL1RAPL1
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Yamagata, A, Fukai, S.
登録日2017-07-27
公開日2017-08-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.701 Å)
主引用文献Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation.
Nat Commun, 6, 2015
3WL9
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HLA-A24 in complex with HIV-1 Nef126-10(8I10F)
分子名称: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-24 alpha chain, ...
著者Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A, Han, C.
登録日2013-11-08
公開日2014-06-11
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Switching and emergence of CTL epitopes in HIV-1 infection
Retrovirology, 11, 2014
3WLB
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BU of 3wlb by Molmil
HLA-A24 in complex with HIV-1 Nef126-10(8T10F)
分子名称: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-24 alpha chain, ...
著者Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A, Han, C.
登録日2013-11-08
公開日2014-06-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Switching and emergence of CTL epitopes in HIV-1 infection
Retrovirology, 11, 2014
2E4M
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Crystal structure of hemagglutinin subcomponent complex (HA-33/HA-17) from Clostridium botulinum serotype D strain 4947
分子名称: HA-17, Main hemagglutinin component
著者Hasegawa, K, Watanabe, T, Suzuki, T, Yamano, A, Niwa, K, Ohyama, T.
登録日2006-12-13
公開日2007-06-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A Novel Subunit Structure of Clostridium botulinum Serotype D Toxin Complex with Three Extended Arms
J.Biol.Chem., 282, 2007
3B2E
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BU of 3b2e by Molmil
Crystal structure of S. cerevisiae Get3 in the open conformation in complex with Get1 cytosolic domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase GET3, Golgi to ER traffic protein 1
著者Kubota, K, Yamagata, A, Fukai, S.
登録日2011-07-30
公開日2012-06-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Get1 stabilizes an open dimer conformation of get3 ATPase by binding two distinct interfaces
J.Mol.Biol., 422, 2012
6J6X
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Crystal structure of apo GGTaseIII
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Geranylgeranyl transferase type-2 subunit beta, MAGNESIUM ION, ...
著者Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S.
登録日2019-01-16
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.962 Å)
主引用文献Crystal structure of apo GGTaseIII
To Be Published
6J74
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Complex of GGTaseIII and full-length Ykt6
分子名称: Geranylgeranyl transferase type-2 subunit beta, PHOSPHATE ION, Protein prenyltransferase alpha subunit repeat-containing protein 1, ...
著者Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S.
登録日2019-01-16
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.212 Å)
主引用文献Complex of GGTaseIII and full-length Ykt6
To Be Published
6J7F
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Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP
分子名称: DIPHOSPHATE, FARNESYL, GERAN-8-YL GERAN, ...
著者Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S.
登録日2019-01-18
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.883 Å)
主引用文献Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP
To Be Published
6J7X
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Complex of GGTaseIII, farnesyl-Ykt6, and GGPP
分子名称: FORMIC ACID, GERANYLGERANYL DIPHOSPHATE, Geranylgeranyl transferase type-2 subunit beta, ...
著者Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S.
登録日2019-01-18
公開日2020-01-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Complex of GGTaseIII, farnesyl-Ykt6 (C-terminal methylated), and GGPP
To Be Published
3SIC
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BU of 3sic by Molmil
MOLECULAR RECOGNITION AT THE ACTIVE SITE OF SUBTILISIN BPN': CRYSTALLOGRAPHIC STUDIES USING GENETICALLY ENGINEERED PROTEINACEOUS INHIBITOR SSI (STREPTOMYCES SUBTILISIN INHIBITOR)
分子名称: CALCIUM ION, STREPTOMYCES SUBTILISIN INHIBITOR (SSI), SUBTILISIN BPN'
著者Mitsui, Y, Takeuchi, Y, Nakamura, K.T.
登録日1991-08-30
公開日1994-01-31
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular recognition at the active site of subtilisin BPN': crystallographic studies using genetically engineered proteinaceous inhibitor SSI (Streptomyces subtilisin inhibitor).
Protein Eng., 4, 1991
2SIC
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BU of 2sic by Molmil
REFINED CRYSTAL STRUCTURE OF THE COMPLEX OF SUBTILISIN BPN' AND STREPTOMYCES SUBTILISIN INHIBITOR AT 1.8 ANGSTROMS RESOLUTION
分子名称: CALCIUM ION, STREPTOMYCES SUBTILISIN INHIBITOR (SSI), SUBTILISIN BPN'
著者Mitsui, Y, Takeuchi, Y, Hirono, S, Akagawa, H, Nakamura, K.T.
登録日1991-04-01
公開日1993-04-15
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Refined crystal structure of the complex of subtilisin BPN' and Streptomyces subtilisin inhibitor at 1.8 A resolution.
J.Mol.Biol., 221, 1991
5JYJ
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Crystal structure of mouse JUNO
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sperm-egg fusion protein Juno
著者Kato, K, Nishimasu, H, Morita, J, Ishitani, R, Nureki, O.
登録日2016-05-14
公開日2017-05-24
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the egg IZUMO1 receptor JUNO
To Be Published
2TLD
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BU of 2tld by Molmil
CRYSTAL STRUCTURE OF AN ENGINEERED SUBTILISIN INHIBITOR COMPLEXED WITH BOVINE TRYPSIN
分子名称: STREPTOMYCES SUBTILISIN INHIBITOR (SSI), TRYPSIN
著者Mitsui, Y, Takeuchi, Y, Nonaka, T, Nakamura, K.T.
登録日1991-09-16
公開日1992-07-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of an engineered subtilisin inhibitor complexed with bovine trypsin.
Proc.Natl.Acad.Sci.USA, 89, 1992
6LIV
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Crystal structure of Tyrosine decarboxylase in complex with PLP
分子名称: GLYCEROL, Tyrosine/DOPA decarboxylase 2
著者Wang, H, Yu, J, Yao, M.
登録日2019-12-13
公開日2020-02-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal structures clarify cofactor binding of plant tyrosine decarboxylase.
Biochem.Biophys.Res.Commun., 2019
1SRD
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BU of 1srd by Molmil
Three-dimensional structure of CU,ZN-superoxide dismutase from spinach at 2.0 Angstroms resolution
分子名称: COPPER (II) ION, COPPER,ZINC SUPEROXIDE DISMUTASE, ZINC ION
著者Kitagawa, Y, Katsube, Y.
登録日1993-04-15
公開日1994-01-31
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Three-dimensional structure of Cu,Zn-superoxide dismutase from spinach at 2.0 A resolution.
J.Biochem.(Tokyo), 109, 1991
5F20
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Structure of TYK2 with inhibitor 4: 3-azanyl-5-(2-methylphenyl)-7-(1-methylpyrazol-3-yl)-1~{H}-pyrazolo[4,3-c]pyridin-4-one
分子名称: 3-azanyl-5-(2-methylphenyl)-7-(1-methylpyrazol-3-yl)-1~{H}-pyrazolo[4,3-c]pyridin-4-one, Non-receptor tyrosine-protein kinase TYK2
著者Skene, R.J.
登録日2015-12-01
公開日2016-01-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Structure-Based Design and Synthesis of 3-Amino-1,5-dihydro-4H-pyrazolopyridin-4-one Derivatives as Tyrosine Kinase 2 Inhibitors.
J.Med.Chem., 59, 2016
5F1Z
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Structure of TYK2 with inhibitor 16: 3-azanyl-5-[(2~{S})-3-methylbutan-2-yl]-7-[1-methyl-5-(2-oxidanylpropan-2-yl)pyrazol-3-yl]-1~{H}-pyrazolo[4,3-c]pyridin-4-one
分子名称: 3-azanyl-5-[(2~{S})-3-methylbutan-2-yl]-7-[1-methyl-5-(2-oxidanylpropan-2-yl)pyrazol-3-yl]-1~{H}-pyrazolo[4,3-c]pyridin-4-one, Non-receptor tyrosine-protein kinase TYK2
著者Skene, R.J.
登録日2015-12-01
公開日2016-01-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structure-Based Design and Synthesis of 3-Amino-1,5-dihydro-4H-pyrazolopyridin-4-one Derivatives as Tyrosine Kinase 2 Inhibitors.
J.Med.Chem., 59, 2016
5V3O
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Cereblon in complex with DDB1 and CC-220
分子名称: (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione, DNA damage-binding protein 1, Protein cereblon, ...
著者Matyskiela, M, Pagarigan, B, Chamberlain, P.
登録日2017-03-07
公開日2017-05-03
最終更新日2018-02-07
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献A Cereblon Modulator (CC-220) with Improved Degradation of Ikaros and Aiolos.
J. Med. Chem., 61, 2018

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