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7EJR
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BU of 7ejr by Molmil
Crystal structure of V30M mutated transthyretin in complex with 8-chloro-9-oxo-9H-xanthene-3-carboxylic acid
分子名称: 8-chloranyl-9-oxidanylidene-xanthene-3-carboxylic acid, CALCIUM ION, Transthyretin
著者Kitakami, R, Yokoyama, T, Mizuguchi, M.
登録日2021-04-02
公開日2021-10-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.451 Å)
主引用文献Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
7EJQ
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BU of 7ejq by Molmil
Crystal structure of human transthyretin in complex with 8-chloro-9-oxo-9H-xanthene-3-carboxylic acid
分子名称: 8-chloranyl-9-oxidanylidene-xanthene-3-carboxylic acid, CALCIUM ION, Transthyretin
著者Kitakami, R, Yokoyama, T, Mizuguchi, M.
登録日2021-04-02
公開日2021-10-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
8HU1
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BU of 8hu1 by Molmil
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
登録日2022-12-22
公開日2024-04-03
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.69 Å)
主引用文献Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine.
Nat.Struct.Mol.Biol., 31, 2024
8HTZ
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BU of 8htz by Molmil
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
登録日2022-12-22
公開日2024-04-03
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine.
Nat.Struct.Mol.Biol., 31, 2024
8HSP
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BU of 8hsp by Molmil
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Akiyama, N, Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
登録日2022-12-20
公開日2024-04-03
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.32 Å)
主引用文献Structural insights into the decoding capability of isoleucine tRNAs with lysidine and agmatidine.
Nat.Struct.Mol.Biol., 31, 2024
7DT3
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BU of 7dt3 by Molmil
Crystal structure of human transthyretin in complex with 4-chloro-9,10-dioxo-9,10-dihydroanthracene-2-carboxylic acid
分子名称: 4-chloranyl-9,10-bis(oxidanylidene)anthracene-2-carboxylic acid, CALCIUM ION, Transthyretin
著者Kitakami, R, Yokoyama, T, Mizuguchi, M.
登録日2021-01-04
公開日2021-10-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.198 Å)
主引用文献Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
7DT5
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BU of 7dt5 by Molmil
Crystal structure of human transthyretin in complex with 4-chloro-9-oxo-9H-xanthene-2-carboxylic acid
分子名称: 4-chloranyl-9-oxidanylidene-xanthene-2-carboxylic acid, CALCIUM ION, Transthyretin
著者Kitakami, R, Yokoyama, T, Mizuguchi, M.
登録日2021-01-04
公開日2021-10-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
7DT6
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BU of 7dt6 by Molmil
Crystal structure of V30M mutated transthyretin in complex with purpurin
分子名称: Purpurin, Transthyretin
著者Kitakami, R, Yokoyama, T, Mizuguchi, M.
登録日2021-01-04
公開日2021-10-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
7DT8
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BU of 7dt8 by Molmil
Crystal structure of V30M mutated transthyretin in complex with 4-chloro-9-oxo-9H-xanthene-2-carboxylic acid
分子名称: 4-chloranyl-9-oxidanylidene-xanthene-2-carboxylic acid, CALCIUM ION, Transthyretin
著者Kitakami, R, Yokoyama, T, Mizuguchi, M.
登録日2021-01-04
公開日2021-10-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Inhibitory activities of anthraquinone and xanthone derivatives against transthyretin amyloidogenesis.
Bioorg.Med.Chem., 44, 2021
5ZSU
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BU of 5zsu by Molmil
Structure of the human homo-hexameric LRRC8A channel at 4.25 Angstroms
分子名称: Volume-regulated anion channel subunit LRRC8A
著者Kasuya, G, Nakane, T, Yokoyama, T, Shirouzu, M, Ishitani, R, Nureki, O.
登録日2018-04-29
公開日2018-08-15
最終更新日2018-09-26
実験手法ELECTRON MICROSCOPY (4.25 Å)
主引用文献Cryo-EM structures of the human volume-regulated anion channel LRRC8.
Nat. Struct. Mol. Biol., 25, 2018
2DGE
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BU of 2dge by Molmil
Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana
分子名称: Cytochrome c6, PROTOPORPHYRIN IX CONTAINING FE, ZINC ION
著者Chida, H, Yokoyama, T, Kawai, F, Nakazawa, A, Akazaki, H, Takayama, Y, Hirano, T, Suruga, K, Satoh, T, Yamada, S, Kawachi, R, Unzai, S, Nishio, T, Park, S.-Y, Oku, T.
登録日2006-03-11
公開日2006-07-04
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana
Febs Lett., 580, 2006
2DN1
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BU of 2dn1 by Molmil
1.25A resolution crystal structure of human hemoglobin in the oxy form
分子名称: Hemoglobin alpha subunit, Hemoglobin beta subunit, OXYGEN MOLECULE, ...
著者Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
登録日2006-04-25
公開日2006-05-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2DN3
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BU of 2dn3 by Molmil
1.25A resolution crystal structure of human hemoglobin in the carbonmonoxy form
分子名称: CARBON MONOXIDE, Hemoglobin alpha subunit, Hemoglobin beta subunit, ...
著者Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
登録日2006-04-25
公開日2006-05-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2DN2
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BU of 2dn2 by Molmil
1.25A resolution crystal structure of human hemoglobin in the deoxy form
分子名称: Hemoglobin alpha subunit, Hemoglobin beta subunit, PROTOPORPHYRIN IX CONTAINING FE
著者Park, S.-Y, Yokoyama, T, Shibayama, N, Shiro, Y, Tame, J.R.
登録日2006-04-25
公開日2006-05-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2EXS
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BU of 2exs by Molmil
TRAP3 (engineered TRAP)
分子名称: TRYPTOPHAN, Transcription attenuation protein mtrB
著者Heddle, J.G, Yokoyama, T, Yamashita, I, Park, S.Y, Tame, J.R.H.
登録日2005-11-08
公開日2006-08-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Rounding up: Engineering 12-Membered Rings from the Cyclic 11-Mer TRAP
Structure, 14, 2006
2EXT
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BU of 2ext by Molmil
TRAP4 (engineered TRAP)
分子名称: TRYPTOPHAN, Transcription attenuation protein mtrB
著者Heddle, J.G, Yokoyama, T, Yamashita, I, Park, S.Y, Tame, J.R.H.
登録日2005-11-08
公開日2006-08-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Rounding up: Engineering 12-Membered Rings from the Cyclic 11-Mer TRAP
Structure, 14, 2006
8YJ7
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BU of 8yj7 by Molmil
Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
分子名称: Iron ABC transporter substrate-binding lipoprotein MtsA, ZINC ION, scFv13
著者Ito, S, Nagatoishi, S, Nakakido, M, Tsumoto, K.
登録日2024-03-01
公開日2024-06-19
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Characterization of a novel format scFv×VHH single-chain biparatopic antibody against metal binding protein MtsA.
Protein Sci., 33, 2024
8YJ8
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BU of 8yj8 by Molmil
Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
分子名称: Iron ABC transporter substrate-binding lipoprotein MtsA, VHH43, ZINC ION
著者Ito, S, Nagatoishi, S, Nakakido, M, Tsumoto, K.
登録日2024-03-01
公開日2024-06-19
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Characterization of a novel format scFv×VHH single-chain biparatopic antibody against metal binding protein MtsA.
Protein Sci., 33, 2024
8YJ5
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BU of 8yj5 by Molmil
Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
分子名称: Iron ABC transporter substrate-binding lipoprotein MtsA, VHH43
著者Ito, S, Nagatoishi, S, Nakakido, M, Tsumoto, K.
登録日2024-03-01
公開日2024-06-19
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.66 Å)
主引用文献Characterization of a novel format scFv×VHH single-chain biparatopic antibody against metal binding protein MtsA.
Protein Sci., 33, 2024
8YJ6
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BU of 8yj6 by Molmil
Characerization of a novel format scFvXVHH single-chain Biparatopic antibody against a metal binding protein, MtsA
分子名称: Iron ABC transporter substrate-binding lipoprotein MtsA, ZINC ION
著者Ito, S, Nagatoishi, S, Nakakido, M, Tsumoto, K.
登録日2024-03-01
公開日2024-06-19
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Characterization of a novel format scFv×VHH single-chain biparatopic antibody against metal binding protein MtsA.
Protein Sci., 33, 2024
5XOG
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BU of 5xog by Molmil
RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA (30-MER), DNA (39-MER), ...
著者Ehara, H, Shirouzu, M, Sekine, S.
登録日2017-05-28
公開日2017-08-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of the complete elongation complex of RNA polymerase II with basal factors
Science, 357, 2017
8WHN
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BU of 8whn by Molmil
Crystal Structure of the cytoplasmic domain of OST1 (Ribophorin I) from Candidatus Prometheoarchaeum syntrophicum strain MK-D1
分子名称: Ribophorin 1 superfamily protein
著者Robinson, R.C, Carilo, I.
登録日2023-09-23
公開日2024-09-25
最終更新日2024-10-02
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Intercompatibility of eukaryotic and Asgard archaea ribosome-translocon machineries.
J.Biol.Chem., 300, 2024
7W6Z
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BU of 7w6z by Molmil
Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P21
分子名称: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, ZINC ION, Zinc metalloprotease
著者Imaizumi, Y, Takanuki, K, Nogi, T.
登録日2021-12-02
公開日2022-09-07
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
7W71
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BU of 7w71 by Molmil
Crystal structure of the PDZ-C domain of E. coli RseP in complex with 12C7 Fab
分子名称: Heavy chain of Fab, Light chain of Fab, Regulator of sigma-E protease RseP
著者Hirose, T, Katagiri, S, Nogi, T.
登録日2021-12-02
公開日2022-09-07
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022
7W70
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BU of 7w70 by Molmil
Crystal structure of the PDZ-C domain fragment of Kangiella koreensis RseP orthologue
分子名称: Zinc metalloprotease
著者Miyoshi, K, Nogi, T.
登録日2021-12-02
公開日2022-09-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP.
Sci Adv, 8, 2022

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