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8K2F
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BU of 8k2f by Molmil
Crystal structure of Group 1 oligosaccharide-releasing beta-N-acetylgalactosaminidase NgaCa from Cohnella abietis, apo 1 form
分子名称: MAGNESIUM ION, Oligosaccharide-releasing beta-N-acetylgalactosaminidase
著者Sumida, T, Fushinobu, S.
登録日2023-07-12
公開日2024-04-24
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Genetic and functional diversity of beta-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis.
Nat Commun, 15, 2024
8K2I
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BU of 8k2i by Molmil
Crystal structure of Group 2 Oligosaccharide/Monosaccharide-releasing beta-N-acetylhexosaminidase NgaAt from Arabidopsis thaliana in complex with GlcNAc-thiazoline
分子名称: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Sumida, T, Fushinobu, S.
登録日2023-07-12
公開日2024-04-24
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Genetic and functional diversity of beta-N-acetylgalactosamine-targeting glycosidases expanded by deep-sea metagenome analysis.
Nat Commun, 15, 2024
6JWJ
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BU of 6jwj by Molmil
Npl4 in complex with Ufd1
分子名称: GLYCEROL, Nuclear protein localization protein 4, Peptide from Ubiquitin fusion degradation protein 1, ...
著者Sato, Y, Fukai, S.
登録日2019-04-20
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural insights into ubiquitin recognition and Ufd1 interaction of Npl4.
Nat Commun, 10, 2019
6JWH
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BU of 6jwh by Molmil
Yeast Npl4 zinc finger, MPN and CTD domains
分子名称: GLYCEROL, Nuclear protein localization protein 4, ZINC ION
著者Sato, Y, Fukai, S.
登録日2019-04-20
公開日2019-12-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.72000253 Å)
主引用文献Structural insights into ubiquitin recognition and Ufd1 interaction of Npl4.
Nat Commun, 10, 2019
7X59
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BU of 7x59 by Molmil
A CBg-ParM filament with GTP or GDPPi
分子名称: GUANOSINE-5'-TRIPHOSPHATE, ParM/StbA family protein
著者Koh, A, Ali, S, Robinson, R, Narita, A.
登録日2022-03-04
公開日2023-03-08
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献A new actin-like filament from Clostridium botulinum exhibits a new system of filament turn over
To Be Published
7X54
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BU of 7x54 by Molmil
A CBg-ParM filament with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ParM/StbA family protein
著者Koh, A, Ali, S, Robinson, R, Narita, A.
登録日2022-03-04
公開日2023-03-08
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献A new actin-like filament from Clostridium botulinum exhibits a new system of filament turn over
To Be Published
7X55
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BU of 7x55 by Molmil
A CBg-ParM filament with GTP and a short incubation time
分子名称: GUANOSINE-5'-TRIPHOSPHATE, ParM/StbA family protein
著者Koh, A, Ali, S, Robinson, R, Narita, A.
登録日2022-03-04
公開日2023-03-08
実験手法ELECTRON MICROSCOPY (8.6 Å)
主引用文献A new actin-like filament from Clostridium botulinum exhibits a new system of filament turn over
To Be Published
7X56
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BU of 7x56 by Molmil
A CBg-ParM filament with ADP
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ParM/StbA family protein
著者Koh, A, Ali, S, Robinson, R, Narita, A.
登録日2022-03-04
公開日2023-03-08
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献A new actin-like filament from Clostridium botulinum exhibits a new system of filament turn over
To Be Published
1V7A
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BU of 1v7a by Molmil
Crystal structures of adenosine deaminase complexed with potent inhibitors
分子名称: 1-{(1R,2S)-2-HYDROXY-1-[2-(2-NAPHTHYLOXY)ETHYL]PROPYL}-1H-IMIDAZONE-4-CARBOXAMIDE, ZINC ION, adenosine deaminase
著者Kinoshita, T.
登録日2003-12-14
公開日2004-12-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors
J.Med.Chem., 47, 2004
1V79
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BU of 1v79 by Molmil
Crystal structures of adenosine deaminase complexed with potent inhibitors
分子名称: 1-{(1R,2S)-1-[2-(2,3,-DICHLOROPHENYL)ETHYL]-2-HYDROXYPROPYL}-1H-IMIDAZOLE-4-CARBOXAMIDE, Adenosine deaminase, ZINC ION
著者Kinoshita, T.
登録日2003-12-14
公開日2004-12-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors
J.Med.Chem., 47, 2004
7W52
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BU of 7w52 by Molmil
Crystal structure of fragmin domain-1 (15-160) in complex with actin
分子名称: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Takeda, S.
登録日2021-11-29
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W4Z
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BU of 7w4z by Molmil
Crystal structure of fragmin domain-1 in complex with actin (AMPPNP-form)
分子名称: 1,2-ETHANEDIOL, Actin, alpha skeletal muscle, ...
著者Takeda, S.
登録日2021-11-29
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W50
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BU of 7w50 by Molmil
Crystal structure of fragmin domain-1 in complex with actin (ADP-Pi-form)
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
著者Takeda, S.
登録日2021-11-29
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
7W51
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BU of 7w51 by Molmil
Crystal structure of fragmin domain-1 in complex with actin (ADP-form)
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
著者Takeda, S.
登録日2021-11-29
公開日2022-10-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structures and mechanisms of actin ATP hydrolysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
1V5W
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BU of 1v5w by Molmil
Crystal structure of the human Dmc1 protein
分子名称: Meiotic recombination protein DMC1/LIM15 homolog
著者Kinebuchi, T, Kagawa, W, Enomoto, R, Ikawa, S, Shibata, T, Kurumizaka, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-11-26
公開日2004-05-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein dmc1
Mol.Cell, 14, 2004
6IXW
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BU of 6ixw by Molmil
pCBH ParM non-polymerisable quadruple mutant
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, pCBH ParM
著者Koh, F, Popp, D, Narita, A, Robinson, R.C.
登録日2018-12-12
公開日2019-06-19
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.253 Å)
主引用文献The structure of a 15-stranded actin-like filament from Clostridium botulinum.
Nat Commun, 10, 2019
2E1W
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BU of 2e1w by Molmil
Crystal structure of adenosine deaminase complexed with potent inhibitors
分子名称: 1-{(1R,2S)-2-HYDROXY-1-[2-(1-NAPHTHYL)ETHYL]PROPYL}-1H-IMIDAZOLE-4-CARBOXAMIDE, Adenosine deaminase, ZINC ION
著者Kinoshita, T.
登録日2006-10-30
公開日2006-11-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-Based Design and Synthesis of Non-Nucleoside, Potent, and Orally Bioavailable Adenosine Deaminase Inhibitors
J.Med.Chem., 47, 2004
2ZFU
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BU of 2zfu by Molmil
Structure of the methyltransferase-like domain of nucleomethylin
分子名称: Cerebral protein 1, S-ADENOSYL-L-HOMOCYSTEINE
著者Minami, H, Hashimoto, H, Murayama, A, Yanagisawa, J, Sato, M, Shimizu, T.
登録日2008-01-14
公開日2008-12-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Epigenetic control of rDNA loci in response to intracellular energy status
Cell(Cambridge,Mass.), 133, 2008
7Y15
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BU of 7y15 by Molmil
Cryo-EM structure of apo-state MrgD-Gi complex
分子名称: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
著者Suzuki, S, Iida, M, Kawamoto, A, Oshima, A.
登録日2022-06-06
公開日2022-07-20
最終更新日2022-11-23
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.
Commun Biol, 5, 2022
7Y12
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BU of 7y12 by Molmil
Cryo-EM structure of MrgD-Gi complex with beta-alanine
分子名称: BETA-ALANINE, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Suzuki, S, Iida, M, Kawamoto, A, Oshima, A.
登録日2022-06-06
公開日2022-07-20
最終更新日2023-02-15
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.
Commun Biol, 5, 2022
7Y14
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BU of 7y14 by Molmil
Cryo-EM structure of MrgD-Gi complex with beta-alanine (local)
分子名称: BETA-ALANINE, PALMITIC ACID, Soluble cytochrome b562,Mas-related G-protein coupled receptor member D
著者Suzuki, S, Iida, M, Kawamoto, A, Oshima, A.
登録日2022-06-06
公開日2022-07-20
最終更新日2022-11-23
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.
Commun Biol, 5, 2022
7Y13
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BU of 7y13 by Molmil
Cryo-EM structure of apo-state MrgD-Gi complex (local)
分子名称: PALMITIC ACID, Soluble cytochrome b562,Mas-related G-protein coupled receptor member D
著者Suzuki, S, Iida, M, Kawamoto, A, Oshima, A.
登録日2022-06-06
公開日2022-07-20
最終更新日2022-11-23
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.
Commun Biol, 5, 2022
1UML
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BU of 1uml by Molmil
Crystal structure of adenosine deaminase complexed with a potent inhibitor FR233624
分子名称: 1-((1R)-1-(HYDROXYMETHYL)-3-{6-[(3-PHENYLPROPANOYL)AMINO]-1H-INDOL-1-YL}PROPYL)-1H-IMIDAZOLE-4-CARBOXAMIDE, Adenosine deaminase, ZINC ION
著者Kinoshita, T.
登録日2003-10-03
公開日2004-09-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-based design, synthesis, and structure-activity relationship studies of novel non-nucleoside adenosine deaminase inhibitors
J.Med.Chem., 47, 2004
1G4B
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BU of 1g4b by Molmil
CRYSTAL STRUCTURES OF THE HSLVU PEPTIDASE-ATPASE COMPLEX REVEAL AN ATP-DEPENDENT PROTEOLYSIS MECHANISM
分子名称: ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU, ATP-DEPENDENT PROTEASE HSLV
著者Wang, J, Song, J.J, Franklin, M.C, Kamtekar, S, Im, Y.J, Rho, S.H, Seong, I.S, Lee, C.S, Chung, C.H, Eom, S.H.
登録日2000-10-26
公開日2001-02-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (7 Å)
主引用文献Crystal structures of the HslVU peptidase-ATPase complex reveal an ATP-dependent proteolysis mechanism.
Structure, 9, 2001
1G4A
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BU of 1g4a by Molmil
CRYSTAL STRUCTURES OF THE HSLVU PEPTIDASE-ATPASE COMPLEX REVEAL AN ATP-DEPENDENT PROTEOLYSIS MECHANISM
分子名称: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU, ATP-DEPENDENT PROTEASE HSLV
著者Wang, J, Song, J.J, Franklin, M.C, Kamtekar, S, Im, Y.J, Rho, S.H, Seong, I.S, Lee, C.S, Chung, C.H, Eom, S.H.
登録日2000-10-26
公開日2001-02-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structures of the HslVU peptidase-ATPase complex reveal an ATP-dependent proteolysis mechanism.
Structure, 9, 2001

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