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crystal structure of Arabidopsis AIPP3 BAH domain in complex with an H3K27me3 peptide
分子名称:	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bromo-adjacent homology (BAH) domain-containing protein, Histone H3.2
著者	Yuan, J, Du, J.
登録日	2020-06-17
公開日	2020-12-16
最終更新日	2023-11-29
実験手法	X-RAY DIFFRACTION (2.404 Å)
主引用文献	Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis. Nat Commun, 11, 2020

8H0L

Sulfur binding domain of Hga complexed with phosphorothioated DNA
分子名称:	DNA (5'-D(CPGPAPGP(PST)PTPCPGPGPC)-3'), DNA (5'-D(GPCPCPGPAPAPCPTPCPG)-3'), MAGNESIUM ION, ...
著者	Liu, G, He, X, Hu, W, Yang, B, Xiao, Q.
登録日	2022-09-29
公開日	2023-09-27
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.8 Å)
主引用文献	Characterization of a promiscuous DNA sulfur binding domain and application in site-directed RNA base editing. Nucleic Acids Res., 51, 2023

6TCL

Photosystem I tetramer
分子名称:	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
著者	Chen, M, Perez-Boerema, A, Li, S, Amunts, A.
登録日	2019-11-06
公開日	2020-02-19
最終更新日	2024-05-22
実験手法	ELECTRON MICROSCOPY (3.2 Å)
主引用文献	Distinct structural modulation of photosystem I and lipid environment stabilizes its tetrameric assembly. Nat.Plants, 6, 2020

7V2R

Active state complex I from Q1-NADH dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-09
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.6 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V2D

Deactive state complex I from Q10 dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ADENOSINE-5'-DIPHOSPHATE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-08
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (3.3 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V2E

Active state complex I from Q10-NADH dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-08
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.8 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V33

Active state complex I from rotenone-NADH dataset
分子名称:	(2R,6aS,12aS)-8,9-dimethoxy-2-(prop-1-en-2-yl)-1,2,12,12a-tetrahydrofuro[2',3':7,8][1]benzopyrano[2,3-c][1]benzopyran-6(6aH)-one, (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-10
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.6 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V30

Deactive state complex I from Q1-NADH dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-10
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.7 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V2K

Deactive state complex I from DQ-NADH dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-09
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.7 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V32

Deactive state complex I from rotenone dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ADENOSINE-5'-DIPHOSPHATE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-10
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (3.2 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V2F

Deactive state complex I from Q10-NADH dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-09
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (3.1 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V2H

Active state complex I from DQ-NADH dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-09
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.5 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V3M

Deactive state complex I from rotenone-NADH dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-10
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.9 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V2C

Active state complex I from Q10 dataset
分子名称:	(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ADENOSINE-5'-DIPHOSPHATE, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-08
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.9 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

7V31

Active state complex I from rotenone dataset
分子名称:	(2R,6aS,12aS)-8,9-dimethoxy-2-(prop-1-en-2-yl)-1,2,12,12a-tetrahydrofuro[2',3':7,8][1]benzopyrano[2,3-c][1]benzopyran-6(6aH)-one, (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ...
著者	Gu, J.K, Yang, M.J.
登録日	2021-08-10
公開日	2022-03-02
実験手法	ELECTRON MICROSCOPY (2.9 Å)
主引用文献	The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022

4YL7

Crystal structure of the indole prenyltransferase MpnD from Marinactinospora thermotolerans
分子名称:	Aromatic prenyltransferase
著者	Mori, T, Morita, H, Abe, I.
登録日	2015-03-05
公開日	2016-03-16
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.601 Å)
主引用文献	Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases. Nat Commun, 7, 2016

4YZL

Crystal structure of the indole prenyltransferase TleC complexed with indolactam V and DMSPP
分子名称:	(2S,5S)-5-(hydroxymethyl)-1-methyl-2-(propan-2-yl)-1,2,4,5,6,8-hexahydro-3H-[1,4]diazonino[7,6,5-cd]indol-3-one, DIMETHYLALLYL S-THIOLODIPHOSPHATE, Tryptophan dimethylallyltransferase
著者	Mori, T, Morita, H, Abe, I.
登録日	2015-03-25
公開日	2016-03-16
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (2.096 Å)
主引用文献	Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases. Nat Commun, 7, 2016

3G3E

Crystal structure of human D-amino acid oxidase in complex with hydroxyquinolin-2(1H)
分子名称:	3-hydroxyquinolin-2(1H)-one, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者	Duplantier, A, Liu, S.
登録日	2009-02-02
公開日	2009-06-23
最終更新日	2023-09-06
実験手法	X-RAY DIFFRACTION (2.2 Å)
主引用文献	Discovery, SAR, and pharmacokinetics of a novel 3-Hydroxyquinolin-2(1H)-one series of potent D-amino acid oxidase (DAAO) inhibitors J.Med.Chem., 52, 2009

6DBK

Tyk2 with compound 8
分子名称:	4-({4-[(1S,4S)-5-(cyanoacetyl)-2,5-diazabicyclo[2.2.1]heptan-2-yl]pyrimidin-2-yl}amino)-N-ethylbenzamide, Non-receptor tyrosine-protein kinase TYK2
著者	Vajdos, F.F.
登録日	2018-05-03
公開日	2018-08-29
最終更新日	2018-11-07
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Dual Inhibition of TYK2 and JAK1 for the Treatment of Autoimmune Diseases: Discovery of (( S)-2,2-Difluorocyclopropyl)((1 R,5 S)-3-(2-((1-methyl-1 H-pyrazol-4-yl)amino)pyrimidin-4-yl)-3,8-diazabicyclo[3.2.1]octan-8-yl)methanone (PF-06700841). J. Med. Chem., 61, 2018

4TW0

Crystal Structure of SCARB2 in Acidic Condition (pH4.8)
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者	Dang, M.H, Wang, X.X, Rao, Z.H.
登録日	2014-06-29
公開日	2015-07-08
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (3.648 Å)
主引用文献	Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71 Protein Cell, 5, 2014

4TVZ

Crystal Structure of SCARB2 in Neural Condition (pH7.5)
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Scavenger receptor class B member 2, ...
著者	Dang, M.H, Wang, X.X, Rao, Z.H.
登録日	2014-06-29
公開日	2015-07-08
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (3.006 Å)
主引用文献	Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71 Protein Cell, 5, 2014

6DBM

Tyk2 with compound 23
分子名称:	Non-receptor tyrosine-protein kinase TYK2, [(1S)-2,2-difluorocyclopropyl][(1R,5S)-3-{2-[(1-methyl-1H-pyrazol-4-yl)amino]pyrimidin-4-yl}-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone
著者	Vajdos, F.F.
登録日	2018-05-03
公開日	2018-08-29
最終更新日	2018-11-07
実験手法	X-RAY DIFFRACTION (2.368 Å)
主引用文献	Dual Inhibition of TYK2 and JAK1 for the Treatment of Autoimmune Diseases: Discovery of (( S)-2,2-Difluorocyclopropyl)((1 R,5 S)-3-(2-((1-methyl-1 H-pyrazol-4-yl)amino)pyrimidin-4-yl)-3,8-diazabicyclo[3.2.1]octan-8-yl)methanone (PF-06700841). J. Med. Chem., 61, 2018

7TJQ

SAN27-14 bound to a antigenic site V on prefusion-stabilized hMPV F
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F0, MPE8 Fab heavy chain, ...
著者	Hsieh, C.-L, McLellan, J.S, Rush, S.A.
登録日	2022-01-16
公開日	2022-09-14
最終更新日	2022-11-23
実験手法	ELECTRON MICROSCOPY (3.13 Å)
主引用文献	Characterization of prefusion-F-specific antibodies elicited by natural infection with human metapneumovirus. Cell Rep, 40, 2022

7TL0

Cryo-EM structure of hMPV preF bound by Fabs MPE8 and SAN32-2
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F0, ...
著者	Rush, S.A, Hsieh, C.-L, McLellan, J.S.
登録日	2022-01-17
公開日	2022-09-14
最終更新日	2022-11-23
実験手法	ELECTRON MICROSCOPY (3.06 Å)
主引用文献	Characterization of prefusion-F-specific antibodies elicited by natural infection with human metapneumovirus. Cell Rep, 40, 2022

4YZK

Crystal structure of the indole prenyltransferase TleC apo structure
分子名称:	Tryptophan dimethylallyltransferase
著者	Mori, T, Morita, H, Abe, I.
登録日	2015-03-25
公開日	2016-03-16
最終更新日	2023-11-08
実験手法	X-RAY DIFFRACTION (1.95 Å)
主引用文献	Manipulation of prenylation reactions by structure-based engineering of bacterial indolactam prenyltransferases. Nat Commun, 7, 2016

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