Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5XAL
DownloadVisualize
BU of 5xal by Molmil
Y99F mutant of Thermus thermophilus HB8 thymidylate kinase
分子名称: FORMIC ACID, MAGNESIUM ION, Thymidylate kinase
著者Chaudhary, S.K, Jeyakanthan, J, Sekar, K.
登録日2017-03-14
公開日2018-03-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural and functional roles of dynamically correlated residues in thymidylate kinase.
Acta Crystallogr D Struct Biol, 74, 2018
5XAK
DownloadVisualize
BU of 5xak by Molmil
Crystal structure (form II) of thymidylate kinase from Thermus thermophilus HB8
分子名称: CESIUM ION, CHLORIDE ION, Thymidylate kinase
著者Chaudhary, S.K, Jeyakanthan, J, Sekar, K.
登録日2017-03-14
公開日2018-03-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural and functional roles of dynamically correlated residues in thymidylate kinase.
Acta Crystallogr D Struct Biol, 74, 2018
4EMN
DownloadVisualize
BU of 4emn by Molmil
Crystal structure of RpfB catalytic domain in complex with benzamidine
分子名称: BENZAMIDINE, Probable resuscitation-promoting factor rpfB, SULFATE ION
著者Ruggiero, A, Marchant, J, Squeglia, F, Makarov, V, De Simone, A, Berisio, R.
登録日2012-04-12
公開日2013-02-27
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Molecular determinants of inactivation of the resuscitation promoting factor B from Mycobacterium tuberculosis.
J.Biomol.Struct.Dyn., 31, 2013
5X8A
DownloadVisualize
BU of 5x8a by Molmil
Crystal structure of ATP bound thymidylate kinase from thermus thermophilus HB8
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Chaudhary, S.K, Jeyakanthan, J, Sekar, K.
登録日2017-03-01
公開日2018-03-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Structural and functional roles of dynamically correlated residues in thymidylate kinase.
Acta Crystallogr D Struct Biol, 74, 2018
2X74
DownloadVisualize
BU of 2x74 by Molmil
Human foamy virus integrase - catalytic core.
分子名称: INTEGRASE
著者Rety, S, Delelis, O, Rezabkova, L, Dubanchet, B, Legrand, P, Silhan, J, Lewit-Bentley, A.
登録日2010-02-23
公開日2010-08-11
最終更新日2012-04-18
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Structural Studies of the Catalytic Core of the Primate Foamy Virus (Pfv-1) Integrase
Acta Crystallogr.,Sect.F, 66, 2010
4EPY
DownloadVisualize
BU of 4epy by Molmil
Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation
分子名称: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Sun, Q, Burke, J.P, Phan, J, Burns, M.C, Olejniczak, E.T, Waterson, A.G, Lee, T, Rossanese, O.W, Fesik, S.W.
登録日2012-04-17
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-Mediated Activation.
Angew.Chem.Int.Ed.Engl., 51, 2012
7X68
DownloadVisualize
BU of 7x68 by Molmil
CYS179 and CYS504 of CRMP2 were covalently binded by a Sesquiterpene lactone
分子名称: (3aR,5S,8R,8aR,9aR)-5,8a-dimethyl-3-methylidene-8-oxidanyl-5,6,7,8,9,9a-hexahydro-3aH-benzo[f][1]benzofuran-2-one, Dihydropyrimidinase-related protein 2, SODIUM ION
著者Zhang, S.D, Ma, Y.F, Zhang, J.
登録日2022-03-06
公開日2022-05-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献CYS179 and CYS504 of CRMP2 were covalently binded by a Sesquiterpene lactone
To Be Published
2MP2
DownloadVisualize
BU of 2mp2 by Molmil
Solution structure of SUMO dimer in complex with SIM2-3 from RNF4
分子名称: E3 ubiquitin-protein ligase RNF4, Small ubiquitin-related modifier 3
著者Xu, Y, Plechanovov, A, Simpson, P, Marchant, J, Leidecker, O, Sebastian, K, Hay, R.T, Matthews, S.J.
登録日2014-05-09
公開日2014-07-02
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4.
Nat Commun, 5, 2014
6K7V
DownloadVisualize
BU of 6k7v by Molmil
Structure of NLRP1 CARD filament
分子名称: NACHT, LRR and PYD domains-containing protein 1
著者Gong, Q, Xu, C, Zhang, J, Wu, B.
登録日2019-06-09
公開日2020-09-16
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis for distinct inflammasome complex assembly by human NLRP1 and CARD8.
Nat Commun, 12, 2021
7F6M
DownloadVisualize
BU of 7f6m by Molmil
Crystal structure of APC complexed with a peptide inhibitor MAI-516
分子名称: Adenomatous polyposis coli protein, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Song, K, Zhang, J.
登録日2021-06-25
公開日2022-06-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery of Efficient Adenomatous Polyposis Coli - Rho Guanine Nucleotide Exchange Factor 4 Inhibitors by Employing High Binding Affinity Tracer
To Be Published
2X78
DownloadVisualize
BU of 2x78 by Molmil
Human foamy virus integrase - catalytic core.
分子名称: INTEGRASE
著者Rety, S, Delelis, O, Rezabkova, L, Dubanchet, B, Legrand, P, Silhan, J, Lewit-Bentley, A.
登録日2010-02-24
公開日2010-08-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Studies of the Catalytic Core of the Primate Foamy Virus (Pfv-1) Integrase
Acta Crystallogr.,Sect.F, 66, 2010
7F7O
DownloadVisualize
BU of 7f7o by Molmil
APC-Asef FP assay tracer
分子名称: Adenomatous polyposis coli protein, N-[3',6'-bis(oxidanyl)-3-oxidanylidene-spiro[2-benzofuran-1,9'-xanthene]-5-yl]methanethioamide, Tracer 7
著者Yang, X, Zhang, J.
登録日2021-06-30
公開日2022-07-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The tracer of FP assay for screening APC-Asef inhbitors
To Be Published
4EPV
DownloadVisualize
BU of 4epv by Molmil
Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation
分子名称: 2-(1H-indol-3-ylmethyl)-1H-imidazo[4,5-c]pyridine, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Sun, Q, Burke, J.P, Phan, J, Burns, M.C, Olejniczak, E.T, Waterson, A.G, Lee, T, Rossanese, O.W, Fesik, S.W.
登録日2012-04-17
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-Mediated Activation.
Angew.Chem.Int.Ed.Engl., 51, 2012
1RQ5
DownloadVisualize
BU of 1rq5 by Molmil
Structural Basis for the Exocellulase Activity of the Cellobiohydrolase CbhA from C. thermocellum
分子名称: CALCIUM ION, Cellobiohydrolase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Schubot, F.D, Kataeva, I.A, Chang, J, Shah, A.K, Ljungdahl, L.G, Rose, J.P, Wang, B.C.
登録日2003-12-04
公開日2004-03-30
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for the exocellulase activity of the cellobiohydrolase CbhA from Clostridium thermocellum
Biochemistry, 43, 2004
7Y78
DownloadVisualize
BU of 7y78 by Molmil
Crystal structure of Cry78Aa
分子名称: 1,2-ETHANEDIOL, AMMONIUM ION, Toxin
著者Cao, B.B, Nie, Y.F, Wang, N.C, Guan, Z.Y, Zhang, D.L, Zhang, J.
登録日2022-06-21
公開日2022-08-31
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The crystal structure of Cry78Aa from Bacillus thuringiensis provides insights into its insecticidal activity.
Commun Biol, 5, 2022
7Y79
DownloadVisualize
BU of 7y79 by Molmil
Crystal structure of Cry78Aa
分子名称: Toxin
著者Cao, B.B, Nie, Y.F, Wang, N.C, Guan, Z.Y, Zhang, D.L, Zhang, J.
登録日2022-06-21
公開日2022-08-31
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献The crystal structure of Cry78Aa from Bacillus thuringiensis provides insights into its insecticidal activity.
Commun Biol, 5, 2022
5WFR
DownloadVisualize
BU of 5wfr by Molmil
Ligand-bound Ras:SOS:Ras complex
分子名称: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Sun, Q, Phan, J, Burns, M.C, Fesik, S.W.
登録日2017-07-12
公開日2018-05-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献High-throughput screening identifies small molecules that bind to the RAS:SOS:RAS complex and perturb RAS signaling.
Anal. Biochem., 548, 2018
4EPX
DownloadVisualize
BU of 4epx by Molmil
Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation
分子名称: GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Sun, Q, Burke, J.P, Phan, J, Burns, M.C, Olejniczak, E.T, Waterson, A.G, Lee, T, Rossanese, O.W, Fesik, S.W.
登録日2012-04-17
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-Mediated Activation.
Angew.Chem.Int.Ed.Engl., 51, 2012
4EPT
DownloadVisualize
BU of 4ept by Molmil
Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation
分子名称: (2-hydroxyphenyl)(pyrrolidin-1-yl)methanethione, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Sun, Q, Burke, J.P, Phan, J, Burns, M.C, Olejniczak, E.T, Waterson, A.G, Lee, T, Rossanese, O.W, Fesik, S.W.
登録日2012-04-17
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-Mediated Activation.
Angew.Chem.Int.Ed.Engl., 51, 2012
5X99
DownloadVisualize
BU of 5x99 by Molmil
T18V mutant of thermus thermophilus HB8 thymidylate kinase
分子名称: FORMIC ACID, MAGNESIUM ION, Thymidylate kinase
著者Chaudhary, S.K, Jeyakanthan, J, Sekar, K.
登録日2017-03-06
公開日2018-03-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Structural and functional roles of dynamically correlated residues in thymidylate kinase.
Acta Crystallogr D Struct Biol, 74, 2018
2XIY
DownloadVisualize
BU of 2xiy by Molmil
Protein kinase Pim-1 in complex with fragment-2 from crystallographic fragment screen
分子名称: 2-HYDROXYMETHYL-BENZOIMIDAZOLE, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Schulz, M.N, Fanghanel, J, Schafer, M, Badock, V, Briem, H, Boemer, U, Nguyen, D, Husemann, M, Hillig, R.C.
登録日2010-07-01
公開日2011-02-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystallographic Fragment Screen Identifies Cinnamic Acid Derivatives as Starting Points for Potent Pim-1 Inhibitors
Acta Crystallogr.,Sect.D, 67, 2011
2VER
DownloadVisualize
BU of 2ver by Molmil
Structural model for the complex between the Dr adhesins and carcinoembryonic antigen (CEA)
分子名称: AFIMBRIAL ADHESIN AFA-III, ARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 5, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
著者Korotkova, N, Yang, Y, Le Trong, I, Cota, E, Demeler, B, Marchant, J, Thomas, W.E, Stenkamp, R.E, Moseley, S.L, Matthews, S.
登録日2007-10-26
公開日2008-01-08
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Binding of Dr Adhesins of Escherichia Coli to Carcinoembryonic Antigen Triggers Receptor Dissociation.
Mol.Microbiol., 67, 2008
2UW1
DownloadVisualize
BU of 2uw1 by Molmil
Ivy Desaturase Structure
分子名称: (3R)-3-HYDROXY-5,5-DIMETHYLHEXANOIC ACID, FE (III) ION, PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE, ...
著者Guy, J.E, Whittle, E, Kumaran, D, Lindqvist, Y, Shanklin, J.
登録日2007-03-15
公開日2007-05-08
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献The Crystal Structure of the Ivy {Delta}4-16:0-Acp Desaturase Reveals Structural Details of the Oxidized Active Site and Potential Determinants of Regioselectivity.
J.Biol.Chem., 282, 2007
4DM9
DownloadVisualize
BU of 4dm9 by Molmil
The Crystal Structure of Ubiquitin Carboxy-terminal hydrolase L1 (UCHL1) bound to a tripeptide fluoromethyl ketone Z-VAE(OMe)-FMK
分子名称: Tripeptide fluoromethyl ketone inhibitor Z-VAE(OMe)-FMK, Ubiquitin carboxyl-terminal hydrolase isozyme L1
著者Davies, C.W, Chaney, J, Korbel, G, Ringe, D, Petsko, G.A, Ploegh, H, Das, C.
登録日2012-02-07
公開日2012-05-23
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The co-crystal structure of ubiquitin carboxy-terminal hydrolase L1 (UCHL1) with a tripeptide fluoromethyl ketone (Z-VAE(OMe)-FMK).
Bioorg.Med.Chem.Lett., 22, 2012
6K8J
DownloadVisualize
BU of 6k8j by Molmil
Structure of NLRC4 CARD filament
分子名称: NLR family CARD domain-containing protein 4
著者Gong, Q, Xu, C, Zhang, J, Boo, Z.Z, Wu, B.
登録日2019-06-12
公開日2020-09-16
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for distinct inflammasome complex assembly by human NLRP1 and CARD8.
Nat Commun, 12, 2021

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon