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2RV5
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BU of 2rv5 by Molmil
Solution structures of the DNA-binding domain (ZF8) of mouse immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RV7
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BU of 2rv7 by Molmil
Solution structures of the DNA-binding domains (ZF3-ZF4-ZF5) of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RUU
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BU of 2ruu by Molmil
Solution structures of the DNA-binding domain (ZF3) of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2RUZ
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BU of 2ruz by Molmil
Solution structures of the DNA-binding domain (ZF11) of immune-related zinc-finger protein ZFAT
分子名称: ZINC ION, Zinc finger protein ZFAT
著者Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S.
登録日2015-01-26
公開日2015-04-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT
J.Struct.Funct.Genom., 16, 2015
2DWV
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BU of 2dwv by Molmil
Solution structure of the second WW domain from mouse salvador homolog 1 protein (mWW45)
分子名称: Salvador homolog 1 protein
著者Ohnishi, S, Kigawa, T, Koshiba, S, Tomizawa, T, Sato, M, Tochio, N, Inoue, M, Harada, T, Watanabe, S, Guntert, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-17
公開日2007-02-17
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form
Febs Lett., 581, 2007
2D9D
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BU of 2d9d by Molmil
Solution structure of the BAG domain (275-350) of BAG-family molecular chaperone regulator-5
分子名称: BAG family molecular chaperone regulator 5
著者Hatta, R, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-12-09
公開日2006-12-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange
Structure, 18, 2010
2ZAU
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BU of 2zau by Molmil
Crystal structure of an N-terminally truncated selenophosphate synthetase from Aquifex aeolicus
分子名称: PHOSPHATE ION, Selenide, water dikinase
著者Sekine, S, Matsumoto, E, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-10-10
公開日2008-06-17
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of an N-terminally truncated selenophosphate synthetase from Aquifex aeolicus
Acta Crystallogr.,Sect.F, 64, 2008
2DWQ
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BU of 2dwq by Molmil
Thermus thermophilus YchF GTP-binding protein
分子名称: GTP-binding protein
著者Kukimoto-Niino, M, Murayama, K, Shorouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-16
公開日2007-02-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Thermus thermophilus YchF GTP-binding protein
To be Published
2DSY
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BU of 2dsy by Molmil
Crystal structure of TTHA0281 from thermus thermophilus HB8
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Hypothetical protein TTHA0281, MAGNESIUM ION
著者Okazaki, N, Kumei, M, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-07-07
公開日2007-03-27
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of a UPF0150-family protein from Thermus thermophilus HB8
ACTA CRYSTALLOGR.,SECT.F, 63, 2007
3AM6
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BU of 3am6 by Molmil
Crystal structure of the proton pumping rhodopsin AR2 from marine alga Acetabularia acetabulum
分子名称: CHOLESTEROL, RETINAL, rhodopsin-2
著者Wada, T, Yokoyama, S.
登録日2010-08-16
公開日2011-07-06
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of the eukaryotic light-driven proton-pumping rhodopsin, Acetabularia rhodopsin II, from marine alga
J.Mol.Biol., 411, 2011
3VRH
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BU of 3vrh by Molmil
Crystal structure of ph0300
分子名称: BICINE, Putative uncharacterized protein PH0300, ZINC ION
著者Nakagawa, H, Kuratani, M, Goto-Ito, S, Ito, T, Sekine, S.I, Yokoyama, S.
登録日2012-04-10
公開日2013-03-13
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA.
Proteins, 2013
2D5A
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BU of 2d5a by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
分子名称: COENZYME A, hypothetical protein PH1109
著者Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-31
公開日2006-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
2D59
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BU of 2d59 by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
分子名称: hypothetical protein PH1109
著者Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-31
公開日2006-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
6IZZ
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BU of 6izz by Molmil
The RNA-dependent RNA polymerase domain of dengue 3 NS5, bound with RK-0404678
分子名称: 2-oxo-2H-1,3-benzoxathiol-5-yl acetate, Genome polyprotein, ZINC ION
著者Shimizu, H, Sekine, S.
登録日2018-12-20
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase.
Plos Negl Trop Dis, 13, 2019
6J00
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BU of 6j00 by Molmil
The RNA-dependent RNA polymerase domain of dengue 3 NS5
分子名称: Genome polyprotein, ZINC ION
著者Shimizu, H, Sekine, S.
登録日2018-12-20
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase.
Plos Negl Trop Dis, 13, 2019
6JMQ
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BU of 6jmq by Molmil
LAT1-CD98hc complex bound to MEM-108 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4F2 cell-surface antigen heavy chain, ...
著者Lee, Y, Nishizawa, T, Kusakizako, T, Oda, K, Ishitani, R, Nakane, T, Nureki, O.
登録日2019-03-13
公開日2019-06-19
最終更新日2025-06-25
実験手法ELECTRON MICROSCOPY (3.31 Å)
主引用文献Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc.
Nat.Struct.Mol.Biol., 26, 2019
6IZX
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BU of 6izx by Molmil
The RNA-dependent RNA polymerase domain of dengue 2 NS5, bound with RK-0404678
分子名称: 2-oxo-2H-1,3-benzoxathiol-5-yl acetate, COBALT (II) ION, Genome polyprotein, ...
著者Shimizu, H, Sekine, S.
登録日2018-12-20
公開日2019-12-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase.
Plos Negl Trop Dis, 13, 2019
6IZY
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BU of 6izy by Molmil
The RNA-dependent RNA polymerase domain of dengue 2 NS5
分子名称: COBALT (II) ION, Genome polyprotein, ZINC ION
著者Shimizu, H, Sekine, S.
登録日2018-12-20
公開日2019-12-25
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase.
Plos Negl Trop Dis, 13, 2019
2DCR
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BU of 2dcr by Molmil
Fully automated solution structure determination of the Fes SH2 domain
分子名称: Proto-oncogene tyrosine-protein kinase Fes/Fps
著者Lopez-Mendez, B, Guntert, P.
登録日2006-01-12
公開日2006-10-17
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Automated protein structure determination from NMR spectra
J.AM.CHEM.SOC., 128, 2006
1WNG
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BU of 1wng by Molmil
Structural study of project ID PH0725 from Pyrococcus horikoshii OT3
分子名称: Probable diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION
著者Kunishima, N, Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-08-02
公開日2005-07-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of two archaeal diphthine synthases: insights into the post-translational modification of elongation factor 2.
Acta Crystallogr.,Sect.D, 64, 2008
1X56
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BU of 1x56 by Molmil
Crystal structure of asparaginyl-tRNA synthetase from Pyrococcus horikoshii
分子名称: Asparaginyl-tRNA synthetase
著者Iwasaki, W, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-15
公開日2006-05-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 360, 2006
1X55
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BU of 1x55 by Molmil
Crystal structure of asparaginyl-tRNA synthetase from Pyrococcus horikoshii complexed with asparaginyl-adenylate analogue
分子名称: 5'-O-[N-(L-ASPARAGINYL)SULFAMOYL]ADENOSINE, Asparaginyl-tRNA synthetase, MAGNESIUM ION, ...
著者Iwasaki, W, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-15
公開日2006-05-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 360, 2006
1X54
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BU of 1x54 by Molmil
Crystal structure of asparaginyl-tRNA synthetase from Pyrococcus horikoshii complexed with asparaginyl-adenylate
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-AMINO-1,4-DIOXOBUTAN-2-AMINIUM ADENOSINE-5'-MONOPHOSPHATE, Asparaginyl-tRNA synthetase, ...
著者Iwasaki, W, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-15
公開日2006-05-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 360, 2006
2DX8
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BU of 2dx8 by Molmil
Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus
分子名称: Pygopus homolog 1, ZINC ION
著者Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-24
公開日2007-05-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus
To be Published
2E0T
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BU of 2e0t by Molmil
Crystal structure of catalytic domain of dual specificity phosphatase 26, MS0830 from Homo sapiens
分子名称: Dual specificity phosphatase 26
著者Xie, Y, Kishishita, S, Murayama, K, Hori-Takemoto, C, Chen, L, Liu, Z.J, Wang, B.C, Shirozu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-10-13
公開日2007-10-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献High-resolution crystal structure of the catalytic domain of human dual-specificity phosphatase 26.
Acta Crystallogr.,Sect.D, 69, 2013

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