Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6YNJ
DownloadVisualize
BU of 6ynj by Molmil
Crystal structure of YTHDC1 with compound DHU_DC1_046
分子名称: (2~{R})-2-(2-chlorophenyl)-5,5-dimethyl-morpholine, SULFATE ION, YTHDC1
著者Bedi, R.K, Huang, D, Wiedmer, L, Caflisch, A.
登録日2020-04-13
公開日2020-07-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-based design of ligands of the m6A-RNA reader YTHDC1
Eur J Med Chem Rep, 5, 2022
6YNM
DownloadVisualize
BU of 6ynm by Molmil
Crystal structure of YTHDC1 with compound DHU_DC1_096
分子名称: 1-[(2~{R},5~{S})-2-(3-chlorophenyl)-5-methyl-morpholin-4-yl]-3-methoxy-propan-2-ol, SULFATE ION, YTHDC1
著者Bedi, R.K, Huang, D, Wiedmer, L, Caflisch, A.
登録日2020-04-14
公開日2020-07-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-based design of ligands of the m6A-RNA reader YTHDC1
Eur J Med Chem Rep, 5, 2022
8OFI
DownloadVisualize
BU of 8ofi by Molmil
Ivabradine bound to HCN4 channel
分子名称: Ivabradine, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
著者Saponaro, A, Chaves-Sanjuan, A, Sharifzadeh, A.S, Clarke, O.B, Marabelli, C, Bolognesi, M, Thiel, G, Moroni, A.
登録日2023-03-15
公開日2024-08-14
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural determinants of ivabradine block of the open pore of HCN4.
Proc.Natl.Acad.Sci.USA, 121, 2024
4MND
DownloadVisualize
BU of 4mnd by Molmil
Crystal structure of Archaeoglobus fulgidus IPCT-DIPPS bifunctional membrane protein
分子名称: CTP L-myo-inositol-1-phosphate cytidylyltransferase/CDP-L-myo-inositol myo-inositolphosphotransferase, EICOSANE, MAGNESIUM ION
著者Nogly, P, Gushchin, I, Remeeva, A, Esteves, A.M, Ishchenko, A, Ma, P, Grudinin, S, Borges, N, Round, E, Moraes, I, Borshchevskiy, V, Santos, H, Gordeliy, V, Archer, M.
登録日2013-09-10
公開日2014-07-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献X-ray structure of a CDP-alcohol phosphatidyltransferase membrane enzyme and insights into its catalytic mechanism.
Nat Commun, 5, 2014
2JTV
DownloadVisualize
BU of 2jtv by Molmil
Solution Structure of protein RPA3401, Northeast Structural Genomics Consortium Target RpT7, Ontario Center for Structural Proteomics Target RP3384
分子名称: Protein of Unknown Function
著者Ignatchenko, A, Gutmanas, A, Lemak, A, Yee, A, Karra, M, Srisailam, S, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG)
登録日2007-08-07
公開日2007-10-09
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution Structure of protein RPA3401, Northeast Structural Genomics Consortium Target RpT7, Ontario Center for Structural Proteomics Target RP3384
TO BE PUBLISHED
2WK0
DownloadVisualize
BU of 2wk0 by Molmil
Crystal structure of the class A beta-lactamase BS3 inhibited by 6- beta-iodopenicillanate.
分子名称: (3S)-2,2-dimethyl-3,4-dihydro-2H-1,4-thiazine-3,6-dicarboxylic acid, BETA-LACTAMASE, CHLORIDE ION, ...
著者Sauvage, E, Zervosen, A, Dive, G, Herman, R, Kerff, F, Amoroso, A, Fonze, E, Pratt, R.F, Luxen, A, Charlier, P.
登録日2009-06-03
公開日2009-12-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural Basis of the Inhibition of Class a Beta-Lactamases and Penicillin-Binding Proteins by 6-Beta-Iodopenicillanate.
J.Am.Chem.Soc., 131, 2009
3ZKM
DownloadVisualize
BU of 3zkm by Molmil
BACE2 FAB COMPLEX
分子名称: BETA-SECRETASE 2, DIMETHYL SULFOXIDE, FAB HEAVY CHAIN, ...
著者Banner, D.W, Kuglstatter, A, Benz, J, Stihle, M, Ruf, A.
登録日2013-01-23
公開日2013-05-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Mapping the Conformational Space Accessible to Bace2 Using Surface Mutants and Co-Crystals with Fab-Fragments, Fynomers, and Xaperones
Acta Crystallogr.,Sect.D, 69, 2013
6YN5
DownloadVisualize
BU of 6yn5 by Molmil
Inducible lysine decarboxylase LdcI decamer, pH 7.0
分子名称: Inducible lysine decarboxylase
著者Jessop, M, Felix, J, Desfosses, A, Effantin, G, Gutsche, I.
登録日2020-04-10
公開日2021-01-13
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Supramolecular assembly of the Escherichia coli LdcI upon acid stress.
Proc.Natl.Acad.Sci.USA, 118, 2021
1OND
DownloadVisualize
BU of 1ond by Molmil
THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC
分子名称: 23S RIBOSOMAL RNA, 50S ribosomal protein L22, 50S ribosomal protein L32, ...
著者Berisio, R, Schluenzen, F, Harms, J, Bashan, A, Auerbach, T, Baram, D, Yonath, A.
登録日2003-02-27
公開日2003-04-15
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural insight into the role of the ribosomal tunnel in cellular regulation
Nat.Struct.Biol., 10, 2003
6YD9
DownloadVisualize
BU of 6yd9 by Molmil
Ecoli GyrB24 with inhibitor 16a
分子名称: 1,2-ETHANEDIOL, DNA gyrase subunit B, N-[6-(3-azanylpropanoylamino)-1,3-benzothiazol-2-yl]-3,4-bis(chloranyl)-5-methyl-1H-pyrrole-2-carboxamide
著者Barancokova, M, Skok, Z, Benek, O, Cruz, C.D, Tammela, P, Tomasic, T, Zidar, N, Masic, L.P, Zega, A, Stevenson, C.E.M, Mundy, J, Lawson, D.M, Maxwell, A.M, Kikelj, D, Ilas, J.
登録日2020-03-20
公開日2020-12-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Exploring the Chemical Space of Benzothiazole-Based DNA Gyrase B Inhibitors.
Acs Med.Chem.Lett., 11, 2020
1ORU
DownloadVisualize
BU of 1oru by Molmil
Crystal Structure of APC1665, YUAD protein from Bacillus subtilis
分子名称: CHLORIDE ION, SULFATE ION, yuaD protein
著者Kim, Y, Joachimiak, A, Edwards, A, Skarina, T, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
登録日2003-03-15
公開日2003-09-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of APC1665, YUAD protein from Bacillus subtilis
To be Published
7QCR
DownloadVisualize
BU of 7qcr by Molmil
MLLT4/Afadin PDZ domain in complex with the C-terminal peptide from protein E of SARS-CoV-2
分子名称: Afadin, Envelope small membrane protein, SULFATE ION
著者Zhu, Y, Alvarez, F, Haouz, A, Mechaly, A, Caillet-Saguy, C.
登録日2021-11-25
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Interactions of Severe Acute Respiratory Syndrome Coronavirus 2 Protein E With Cell Junctions and Polarity PSD-95/Dlg/ZO-1-Containing Proteins.
Front Microbiol, 13, 2022
7QCT
DownloadVisualize
BU of 7qct by Molmil
PDZ2 of LNX2 with SARS-CoV-2_E PBM complex
分子名称: Envelope small membrane protein, Ligand of Numb protein X 2
著者Zhu, Y, Alvarez, F, Haouz, A, Mechaly, A, Caillet-Saguy, C.
登録日2021-11-25
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.197 Å)
主引用文献Interactions of Severe Acute Respiratory Syndrome Coronavirus 2 Protein E With Cell Junctions and Polarity PSD-95/Dlg/ZO-1-Containing Proteins.
Front Microbiol, 13, 2022
6YN6
DownloadVisualize
BU of 6yn6 by Molmil
Inducible lysine decarboxylase LdcI stacks, pH 5.7
分子名称: Inducible lysine decarboxylase
著者Felix, J, Jessop, M, Desfosses, A, Effantin, G, Gutsche, I.
登録日2020-04-10
公開日2021-01-13
実験手法ELECTRON MICROSCOPY (3.28 Å)
主引用文献Supramolecular assembly of the Escherichia coli LdcI upon acid stress.
Proc.Natl.Acad.Sci.USA, 118, 2021
1OTK
DownloadVisualize
BU of 1otk by Molmil
Structural Genomics, Protein paaC
分子名称: Phenylacetic acid degradation protein paaC
著者Zhang, R, Joachimiak, A, Edwards, A, Savchenko, A, Skarina, T, Midwest Center for Structural Genomics (MCSG)
登録日2003-03-21
公開日2003-10-14
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The 2 A crystal structure of protein paaC from E. Coli
To be Published
7QCS
DownloadVisualize
BU of 7qcs by Molmil
PALS1/MPP5 PDZ domain in complex with SARS-CoV-2_E PBM peptide
分子名称: Envelope small membrane protein, Protein PALS1
著者Zhu, Y, Alvarez, F, Haouz, A, Mechaly, A, Caillet-Saguy, C.
登録日2021-11-25
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.804 Å)
主引用文献Interactions of Severe Acute Respiratory Syndrome Coronavirus 2 Protein E With Cell Junctions and Polarity PSD-95/Dlg/ZO-1-Containing Proteins.
Front Microbiol, 13, 2022
1OU0
DownloadVisualize
BU of 1ou0 by Molmil
precorrin-8X methylmutase related protein
分子名称: precorrin-8X methylmutase related protein
著者Cuff, M.E, Joachimiak, A, Korolev, S, Savchenko, A, Edwards, A, Midwest Center for Structural Genomics (MCSG)
登録日2003-03-24
公開日2003-10-07
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilum.
Proteins, 58, 2004
1P8C
DownloadVisualize
BU of 1p8c by Molmil
Crystal structure of TM1620 (APC4843) from Thermotoga maritima
分子名称: conserved hypothetical protein
著者Kim, Y, Joachimiak, A, Brunzelle, J.S, Korolev, S.V, Edwards, A, Xu, X, Savchenko, A, Midwest Center for Structural Genomics (MCSG)
登録日2003-05-06
公開日2003-09-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure Analysis of Thermotoga maritima protein TM1620 (APC4843)
To be Published
6Y4W
DownloadVisualize
BU of 6y4w by Molmil
Crystal structure of p38 in complex with SR69
分子名称: 1,2-ETHANEDIOL, 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-(cyclohexylamino)-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide, Mitogen-activated protein kinase 14
著者Chaikuad, A, Roehm, S, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
登録日2020-02-23
公開日2020-03-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Selective targeting of the alpha C and DFG-out pocket in p38 MAPK.
Eur.J.Med.Chem., 208, 2020
6Y6H
DownloadVisualize
BU of 6y6h by Molmil
Crystal structure of STK17b (DRAK2) in complex with UNC-AP-194 probe
分子名称: 1,2-ETHANEDIOL, 2-[6-(1-benzothiophen-2-yl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid, Serine/threonine-protein kinase 17B
著者Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Drewry, D, Knapp, S, Structural Genomics Consortium (SGC)
登録日2020-02-26
公開日2020-03-11
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A Chemical Probe for Dark Kinase STK17B Derives Its Potency and High Selectivity through a Unique P-Loop Conformation.
J.Med.Chem., 63, 2020
7T9Z
DownloadVisualize
BU of 7t9z by Molmil
Human Ornithine Aminotransferase (hOAT) crystallized at pH 6.0
分子名称: Ornithine aminotransferase, mitochondrial, PYRIDOXAL-5'-PHOSPHATE
著者Butrin, A, Liu, D.
登録日2021-12-20
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Determination of the pH dependence, substrate specificity, and turnovers of alternative substrates for human ornithine aminotransferase.
J.Biol.Chem., 298, 2022
7TA1
DownloadVisualize
BU of 7ta1 by Molmil
Human Ornithine Aminotransferase (hOAT) soaked with gamma-Aminobutyric acid
分子名称: 4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]BUTANOIC ACID, Ornithine aminotransferase, mitochondrial, ...
著者Butrin, A, Wawrzak, Z, Liu, D.
登録日2021-12-20
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Determination of the pH dependence, substrate specificity, and turnovers of alternative substrates for human ornithine aminotransferase.
J.Biol.Chem., 298, 2022
6PAJ
DownloadVisualize
BU of 6paj by Molmil
Structure of the SrrAB Histidine Kinase DHp-CA domain
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Sensor protein SrrB
著者Lopez Redondo, M.L, Marina Moreno, A.
登録日2019-06-11
公開日2020-04-22
最終更新日2020-06-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The SrrAB two-component system regulatesStaphylococcus aureuspathogenicity through redox sensitive cysteines.
Proc.Natl.Acad.Sci.USA, 117, 2020
7TA0
DownloadVisualize
BU of 7ta0 by Molmil
Human Ornithine Aminotransferase (hOAT) soaked with 5-aminovaleric acid
分子名称: 5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]pentanoic acid, Ornithine aminotransferase, mitochondrial, ...
著者Butrin, A, Liu, D.
登録日2021-12-20
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Determination of the pH dependence, substrate specificity, and turnovers of alternative substrates for human ornithine aminotransferase.
J.Biol.Chem., 298, 2022
6Y6F
DownloadVisualize
BU of 6y6f by Molmil
Crystal structure of STK17B (DRAK2) in complex with PKIS43
分子名称: 1,2-ETHANEDIOL, 2-[6-(4-methylsulfanylphenyl)thieno[3,2-d]pyrimidin-4-yl]sulfanylethanoic acid, Serine/threonine-protein kinase 17B
著者Chaikuad, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Drewry, D, Knapp, S, Structural Genomics Consortium (SGC)
登録日2020-02-26
公開日2020-03-11
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献A Chemical Probe for Dark Kinase STK17B Derives Its Potency and High Selectivity through a Unique P-Loop Conformation.
J.Med.Chem., 63, 2020

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon