2E1O
| Solution structure of RSGI RUH-028, a homeobox domain from human cDNA | 分子名称: | Homeobox protein PRH | 著者 | Nakamura, A, Ohnishi, S, Abe, T, Nameki, N, Tochio, N, Koshiba, S, Kigawa, T, Yokoyama, S, Kawaii, S, Hirota, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2006-10-27 | 公開日 | 2006-11-14 | 最終更新日 | 2024-05-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of RSGI RUH-028, a homeobox domain from human cDNA To be Published
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2DF4
| Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Mn2+ | 分子名称: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | 著者 | Nakamura, A, Yao, M, Tanaka, I. | 登録日 | 2006-02-23 | 公開日 | 2006-07-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2DQN
| Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Asn | 分子名称: | ASPARAGINE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... | 著者 | Nakamura, A, Yao, M, Tanaka, I. | 登録日 | 2006-05-29 | 公開日 | 2006-07-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2G5I
| Structure of tRNA-Dependent Amidotransferase GatCAB complexed with ADP-AlF4 | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, ... | 著者 | Nakamura, A, Yao, M, Tanaka, I. | 登録日 | 2006-02-23 | 公開日 | 2006-07-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.35 Å) | 主引用文献 | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2F2A
| Structure of tRNA-Dependent Amidotransferase GatCAB complexed with Gln | 分子名称: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, GLUTAMINE, ... | 著者 | Nakamura, A, Yao, M, Tanaka, I. | 登録日 | 2005-11-15 | 公開日 | 2006-07-18 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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2G5H
| Structure of tRNA-Dependent Amidotransferase GatCAB | 分子名称: | Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... | 著者 | Nakamura, A, Yao, M, Tanaka, I. | 登録日 | 2006-02-23 | 公開日 | 2006-07-18 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Ammonia channel couples glutaminase with transamidase reactions in GatCAB Science, 312, 2006
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3VM6
| Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate | 分子名称: | 1,5-di-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | 著者 | Nakamura, A, Fujihashi, M, Aono, R, Sato, T, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2011-12-08 | 公開日 | 2012-04-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.85 Å) | 主引用文献 | Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 J.Biol.Chem., 287, 2012
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6KLM
| NMR solution structure of Roseltide rT7 | 分子名称: | Roseltide rT7 | 著者 | Fan, J.S, Kam, A, Loo, S, Yang, D, Tam, P.J. | 登録日 | 2019-07-30 | 公開日 | 2019-11-20 | 最終更新日 | 2023-06-14 | 実験手法 | SOLUTION NMR | 主引用文献 | Roseltide rT7 is a disulfide-rich, anionic, and cell-penetrating peptide that inhibits proteasomal degradation. J.Biol.Chem., 294, 2019
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7DKD
| Stenotrophomonas maltophilia DPP7 in complex with Asn-Tyr | 分子名称: | ASPARAGINE, Dipeptidyl-peptidase, GLYCEROL, ... | 著者 | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | 登録日 | 2020-11-23 | 公開日 | 2021-11-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.92 Å) | 主引用文献 | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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7DKC
| Stenotrophomonas maltophilia DPP7 in complex with Tyr-Tyr | 分子名称: | Dipeptidyl-peptidase, GLYCEROL, TYROSINE | 著者 | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | 登録日 | 2020-11-23 | 公開日 | 2021-11-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.86 Å) | 主引用文献 | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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7DKE
| Stenotrophomonas maltophilia DPP7 in complex with Phe-Tyr | 分子名称: | Dipeptidyl-peptidase, GLYCEROL, PHENYLALANINE, ... | 著者 | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | 登録日 | 2020-11-23 | 公開日 | 2021-11-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.91 Å) | 主引用文献 | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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7DKB
| Stenotrophomonas maltophilia DPP7 in complex with Val-Tyr | 分子名称: | Dipeptidyl-peptidase, TYROSINE, VALINE | 著者 | Sakamoto, Y, Nakamura, A, Suzuki, Y, Honma, N, Roppongi, S, Kushibiki, C, Yonezawa, N, Takahashi, M, Shida, Y, Gouda, H, Nonaka, T, Ogasawara, W, Tanaka, N. | 登録日 | 2020-11-23 | 公開日 | 2021-11-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.03 Å) | 主引用文献 | Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep, 11, 2021
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1CZE
| ASPARTATE AMINOTRANSFERASE MUTANT ATB17/139S/142N WITH SUCCINIC ACID | 分子名称: | ASPARTATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE, SUCCINIC ACID | 著者 | Okamoto, A, Oue, S, Yano, T, Kagamiyama, H. | 登録日 | 1999-09-02 | 公開日 | 2000-02-28 | 最終更新日 | 2023-08-09 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Cocrystallization of a mutant aspartate aminotransferase with a C5-dicarboxylic substrate analog: structural comparison with the enzyme-C4-dicarboxylic analog complex. J.Biochem.(Tokyo), 127, 2000
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1CZC
| ASPARTATE AMINOTRANSFERASE MUTANT ATB17/139S/142N WITH GLUTARIC ACID | 分子名称: | GLUTARIC ACID, PROTEIN (ASPARTATE AMINOTRANSFERASE), PYRIDOXAL-5'-PHOSPHATE | 著者 | Okamoto, A, Oue, S, Yano, T, Kagamiyama, H. | 登録日 | 1999-09-02 | 公開日 | 2000-02-28 | 最終更新日 | 2023-08-09 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Cocrystallization of a mutant aspartate aminotransferase with a C5-dicarboxylic substrate analog: structural comparison with the enzyme-C4-dicarboxylic analog complex. J.Biochem.(Tokyo), 127, 2000
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4TQD
| Crystal Structure of the C-terminal domain of IFRS bound with 3-iodo-L-Phe and ATP | 分子名称: | 1,2-ETHANEDIOL, 3-iodo-L-phenylalanine, ADENOSINE-5'-TRIPHOSPHATE, ... | 著者 | Nakamura, A, O'Donoghue, P, Soll, D. | 登録日 | 2014-06-11 | 公開日 | 2014-11-12 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.1429 Å) | 主引用文献 | Polyspecific pyrrolysyl-tRNA synthetases from directed evolution. Proc.Natl.Acad.Sci.USA, 111, 2014
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4TQF
| Crystal Structure of the C-terminal domain of IFRS bound with 2-(5-bromothienyl)-L-Ala and ATP | 分子名称: | 1,2-ETHANEDIOL, 3-(5-bromothiophen-2-yl)-L-alanine, ADENOSINE-5'-TRIPHOSPHATE, ... | 著者 | Nakamura, A, O'Donoghue, P, Soll, D. | 登録日 | 2014-06-11 | 公開日 | 2014-11-12 | 最終更新日 | 2023-09-27 | 実験手法 | X-RAY DIFFRACTION (2.7143 Å) | 主引用文献 | Polyspecific pyrrolysyl-tRNA synthetases from directed evolution. Proc.Natl.Acad.Sci.USA, 111, 2014
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4ZIB
| Crystal Structure of the C-terminal domain of PylRS mutant bound with 3-benzothienyl-l-alanine and ATP | 分子名称: | 1,2-ETHANEDIOL, 3-(1-benzothiophen-3-yl)-L-alanine, ADENOSINE-5'-TRIPHOSPHATE, ... | 著者 | Nakamura, A, Guo, L.T, Wang, Y.S, Soll, D. | 登録日 | 2015-04-28 | 公開日 | 2016-03-02 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.054 Å) | 主引用文献 | Probing the active site tryptophan of Staphylococcus aureus thioredoxin with an analog. Nucleic Acids Res., 43, 2015
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6RWX
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6RWK
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3A2B
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7V5E
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7V5F
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3FKU
| Crystal structure of influenza hemagglutinin (H5) in complex with a broadly neutralizing antibody F10 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, Neutralizing antibody F10, ... | 著者 | Hwang, W.C, Santelli, E, Stec, B, Wei, G, Cadwell, G, Bankston, L.A, Sui, J, Perez, S, Aird, D, Chen, L.M, Ali, M, Murakami, A, Yammanuru, A, Han, T, Cox, N, Donis, R.O, Liddington, R.C, Marasco, W.A. | 登録日 | 2008-12-17 | 公開日 | 2009-02-24 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses. Nat.Struct.Mol.Biol., 16, 2009
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5YP4
| Crystal structure of dipeptidyl peptidase IV (DPP IV) with Lys-Pro from Pseudoxanthomonas mexicana WO24 | 分子名称: | Dipeptidyl aminopeptidase 4, GLYCEROL, LYSINE, ... | 著者 | Roppongi, S, Suzuki, Y, Tateoka, C, Fuimoto, M, Morisawa, S, Iizuka, I, Nakamura, A, Honma, N, Shida, Y, Ogasawara, W, Tanaka, N, Sakamoto, Y, Nonaka, T. | 登録日 | 2017-11-01 | 公開日 | 2018-02-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues. Sci Rep, 8, 2018
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5YP1
| Crystal structure of dipeptidyl peptidase IV (DPP IV) from Pseudoxanthomonas mexicana WO24 | 分子名称: | Dipeptidyl aminopeptidase 4, GLYCEROL | 著者 | Roppongi, S, Suzuki, Y, Tateoka, C, Fuimoto, M, Morisawa, S, Iizuka, I, Nakamura, A, Honma, N, Shida, Y, Ogasawara, W, Tanaka, N, Sakamoto, Y, Nonaka, T. | 登録日 | 2017-11-01 | 公開日 | 2018-02-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.47 Å) | 主引用文献 | Crystal structures of a bacterial dipeptidyl peptidase IV reveal a novel substrate recognition mechanism distinct from that of mammalian orthologues. Sci Rep, 8, 2018
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