3VM6

Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate

Summary for 3VM6

Related3A11 3A9C
DescriptorTranslation initiation factor eIF-2B, delta subunit, 1,5-di-O-phosphono-alpha-D-ribofuranose, DI(HYDROXYETHYL)ETHER, ... (7 entities in total)
Functional Keywordsrossmann fold, hexamer, isomerase, amp metabolism, sugar binding
Biological sourceThermococcus kodakarensis
Total number of polymer chains3
Total molecular weight117451.44
Authors
Nakamura, A.,Fujihashi, M.,Aono, R.,Sato, T.,Nishiba, Y.,Yoshida, S.,Yano, A.,Atomi, H.,Imanaka, T.,Miki, K. (deposition date: 2011-12-08, release date: 2012-04-25, Last modification date: 2013-06-12)
Primary citation
Nakamura, A.,Fujihashi, M.,Aono, R.,Sato, T.,Nishiba, Y.,Yoshida, S.,Yano, A.,Atomi, H.,Imanaka, T.,Miki, K.
Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287:20784-20796, 2012
PubMed: 22511789 (PDB entries with the same primary citation)
DOI: 10.1074/jbc.M112.349423
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.85 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.203230.7%6.2%2.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload