3VM6
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Translation initiation factor eIF-2B, delta subunit | polymer | 338 | 38370.3 | 3 | UniProt (Q5JFM9) Pfam (PF01008) | Thermococcus kodakarensis | |
| 2 | D, J, P (A, B, C) | 1,5-di-O-phosphono-alpha-D-ribofuranose | non-polymer | 310.1 | 3 | Chemie (RI2) | |||
| 3 | E, F, G, K, M... (A, B, C) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 10 | Chemie (PEG) | |||
| 4 | H, O, U (A, B, C) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 5 | I, V (A, C) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 6 | L (B) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 1 | Chemie (PG4) | |||
| 7 | W, X, Y (A, B, C) | water | water | 18.0 | 153 | Chemie (HOH) |
Sequence modifications
A, B, C: 1 - 322 (UniProt: Q5JFM9)
| PDB | External Database | Details |
|---|---|---|
| Met -15 | - | expression tag |
| Asn -14 | - | expression tag |
| His -13 | - | expression tag |
| Lys -12 | - | expression tag |
| Val -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| Ile -4 | - | expression tag |
| Glu -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Arg -1 | - | expression tag |
| His 0 | - | expression tag |
| Ser 133 | Cys 133 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 115110.8 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 2340.7 | |
| All* | Total formula weight | 117451.4 |
