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6U0X
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BU of 6u0x by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS Q123D at cryogenic temperature
分子名称: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
著者Jeliazkov, J.R, Robinson, A.C, Berger, J.M, Garcia-Moreno E, B, Gray, J.G.
登録日2019-08-15
公開日2019-08-28
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Toward the computational design of protein crystals with improved resolution.
Acta Crystallogr D Struct Biol, 75, 2019
5BTG
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BU of 5btg by Molmil
Crystal structure of a topoisomerase II complex
分子名称: (3S)-9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-03
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BTC
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BU of 5btc by Molmil
Crystal structure of a topoisomerase II complex
分子名称: 1-CYCLOPROPYL-6-FLUORO-4-OXO-7-PIPERAZIN-1-YL-1,4-DIHYDROQUINOLINE-3-CARBOXYLIC ACID, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-02
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BTL
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BU of 5btl by Molmil
Crystal structure of a topoisomerase II complex
分子名称: 1-cyclopropyl-6-fluoro-8-methyl-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-03
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BQ5
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BU of 5bq5 by Molmil
Crystal structure of the IstB AAA+ domain bound to ADP-BeF3
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Insertion sequence IS5376 putative ATP-binding protein, ...
著者Arias-Palomo, E, Berger, J.M.
登録日2015-05-28
公開日2015-09-02
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.
Cell, 162, 2015
1A8V
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BU of 1a8v by Molmil
STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR
分子名称: COPPER (II) ION, TRANSCRIPTION TERMINATION FACTOR RHO
著者Fass, D, Bogden, C, Berger, J.M.
登録日1998-03-28
公開日1999-05-04
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structural basis for terminator recognition by the Rho transcription termination factor.
Mol.Cell, 3, 1999
5CFP
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BU of 5cfp by Molmil
Crystal structure of anemone STING (Nematostella vectensis) 'humanized' F276K in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]'
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.066 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFO
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BU of 5cfo by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in apo 'rotated' open conformation
分子名称: Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
8B4H
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BU of 8b4h by Molmil
IstA transposase cleaved donor complex
分子名称: DNA (55-MER) / right IS21 transposon end (insertion sequence IS5376), DNA (57-MER) / right IS21 transposon end (insertion sequence IS5376), MAGNESIUM ION, ...
著者Spinola-Amilibia, M, de la Gandara, A, Araujo-Bazan, L, Berger, J.M, Arias-Palomo, E.
登録日2022-09-20
公開日2023-05-03
実験手法ELECTRON MICROSCOPY (3.35 Å)
主引用文献IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings.
Nat Commun, 14, 2023
5CFL
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BU of 5cfl by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CITRATE ANION, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.836 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFR
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BU of 5cfr by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in apo 'unrotated' closed conformation
分子名称: CALCIUM ION, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5BTF
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BU of 5btf by Molmil
Crystal structure of a topoisomerase II complex
分子名称: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(3S)-3-methylpiperazin-1-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-03
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BTD
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BU of 5btd by Molmil
Crystal structure of a topoisomerase II complex
分子名称: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(3S)-3-methylpiperazin-1-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-03
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.497 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BS8
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BU of 5bs8 by Molmil
Crystal structure of a topoisomerase II complex
分子名称: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-01
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.399 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BTI
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BU of 5bti by Molmil
Crystal structure of a topoisomerase II complex
分子名称: (3S)-9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-03
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.501 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BTN
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BU of 5btn by Molmil
Crystal structure of a topoisomerase II complex
分子名称: 1-cyclopropyl-6-fluoro-8-methyl-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-03
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5BTA
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BU of 5bta by Molmil
Crystal structure of a topoisomerase II complex
分子名称: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-02
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5CFQ
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BU of 5cfq by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 2',3' cGAMP, c[G(2',5')pA(3',5')p]
分子名称: SULFATE ION, Stimulator of Interferon Genes, cGAMP
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFM
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BU of 5cfm by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' cGAMP, c[G(3', 5')pA(3', 5')p]
分子名称: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, CITRATE ANION, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.994 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFN
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BU of 5cfn by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3',3' c-di-AMP, c[A(3',5')pA(3',5')p]
分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
1L8Q
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BU of 1l8q by Molmil
CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR
分子名称: ADENOSINE-5'-DIPHOSPHATE, Chromosomal replication initiator protein dnaA, MAGNESIUM ION
著者Erzberger, J.P, Pirruccello, M.M, Berger, J.M.
登録日2002-03-21
公開日2002-09-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation
Embo J., 21, 2002
437D
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BU of 437d by Molmil
CRYSTAL STRUCTURE OF AN RNA PSEUDOKNOT FROM BEET WESTERN YELLOW VIRUS INVOLVED IN RIBOSOMAL FRAMESHIFTING
分子名称: MAGNESIUM ION, RNA PSEUDOKNOT, SODIUM ION
著者Su, L, Chen, L, Egli, M, Berger, J.M, Rich, A.
登録日1998-11-24
公開日1998-12-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot.
Nat.Struct.Biol., 6, 1999
3HVD
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BU of 3hvd by Molmil
The Protective Antigen Component of Anthrax Toxin Forms Functional Octameric Complexes
分子名称: CALCIUM ION, Protective antigen
著者Kintzer, A.F, Dong, K.C, Berger, J.M, Krantz, B.A.
登録日2009-06-15
公開日2009-08-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.209 Å)
主引用文献The protective antigen component of anthrax toxin forms functional octameric complexes.
J.Mol.Biol., 392, 2009
3ICE
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BU of 3ice by Molmil
Rho transcription termination factor bound to RNA and ADP-BeF3
分子名称: 5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
著者Thomsen, N.D, Berger, J.M.
登録日2009-07-17
公開日2009-11-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Running in reverse: the structural basis for translocation polarity in hexameric helicases.
Cell(Cambridge,Mass.), 139, 2009
3IBP
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BU of 3ibp by Molmil
The Crystal Structure of the Dimerization Domain of Escherichia coli Structural Maintenance of Chromosomes Protein MukB
分子名称: AMMONIUM ION, Chromosome partition protein mukB
著者Li, Y, Schoeffler, A.J, Berger, J.M, Oakley, M.G.
登録日2009-07-16
公開日2010-01-26
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (3.099 Å)
主引用文献The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.
J.Mol.Biol., 395, 2010

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