5XNF
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![BU of 5xnf by Molmil](/molmil-images/mine/5xnf) | Crystal structure of the branched-chain polyamine synthase (BpsA) from Thermococcus kodakarensis | 分子名称: | FE (III) ION, GLYCEROL, N(4)-bis(aminopropyl)spermidine synthase, ... | 著者 | Mizohata, E, Tse, K.M, Fujita, J, Inoue, T. | 登録日 | 2017-05-22 | 公開日 | 2018-08-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. FEBS J., 284, 2017
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1MSF
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![BU of 1msf by Molmil](/molmil-images/mine/1msf) | SOLUTION STRUCTURE OF A SPECIFIC DNA COMPLEX OF THE MYB DNA-BINDING DOMAIN WITH COOPERATIVE RECOGNITION HELICES | 分子名称: | C-Myb DNA-Binding Domain, DNA (5'-D(*AP*TP*GP*TP*GP*TP*GP*TP*CP*AP*GP*TP*TP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*AP*AP*CP*TP*GP*AP*CP*AP*CP*AP*CP*AP*T)-3') | 著者 | Ogata, K, Morikawa, S, Nakamura, H, Sekikawa, A, Inoue, T, Kanai, H, Sarai, A, Ishii, S, Nishimura, Y. | 登録日 | 1995-01-24 | 公開日 | 1995-03-31 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices. Cell(Cambridge,Mass.), 79, 1994
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8H1O
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![BU of 8h1o by Molmil](/molmil-images/mine/8h1o) | Cryo-EM structure of KpFtsZ-monobody double helical tube | 分子名称: | Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE, Mb(Ec/KpFtsZ_S1) | 著者 | Fujita, J, Amesaka, H, Yoshizawa, T, Kuroda, N, Kamimura, N, Hara, M, Inoue, T, Namba, K, Tanaka, S, Matsumura, H. | 登録日 | 2022-10-03 | 公開日 | 2023-08-02 | 実験手法 | ELECTRON MICROSCOPY (2.67 Å) | 主引用文献 | Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun, 14, 2023
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5XNH
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![BU of 5xnh by Molmil](/molmil-images/mine/5xnh) | Crystal structure of the branched-chain polyamine synthase (BpsA) in complex with spermidine | 分子名称: | FE (III) ION, N(4)-bis(aminopropyl)spermidine synthase, SPERMIDINE | 著者 | Mizohata, E, Tse, K.M, Fujita, J, Inoue, T. | 登録日 | 2017-05-22 | 公開日 | 2017-10-04 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | 主引用文献 | Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. FEBS J., 284, 2017
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8IBN
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![BU of 8ibn by Molmil](/molmil-images/mine/8ibn) | Cryo-EM structure of KpFtsZ single filament | 分子名称: | Cell division protein FtsZ, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, POTASSIUM ION | 著者 | Fujita, J, Amesaka, H, Yoshizawa, T, Kuroda, N, Kamimura, N, Hibino, K, Konishi, T, Kato, Y, Hara, M, Inoue, T, Namba, K, Tanaka, S, Matsumura, H. | 登録日 | 2023-02-10 | 公開日 | 2023-08-02 | 最終更新日 | 2024-05-08 | 実験手法 | ELECTRON MICROSCOPY (3.03 Å) | 主引用文献 | Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun, 14, 2023
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5XNC
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![BU of 5xnc by Molmil](/molmil-images/mine/5xnc) | Crystal structure of the branched-chain polyamine synthase (BpsA) in complex with N4-aminopropylspermidine and 5-methylthioadenosine | 分子名称: | 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, DI(HYDROXYETHYL)ETHER, ... | 著者 | Mizohata, E, Tse, K.M, Fujita, J, Inoue, T. | 登録日 | 2017-05-22 | 公開日 | 2018-08-15 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.84 Å) | 主引用文献 | Active site geometry of a novel aminopropyltransferase for biosynthesis of hyperthermophile-specific branched-chain polyamine. FEBS J., 284, 2017
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1FIY
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![BU of 1fiy by Molmil](/molmil-images/mine/1fiy) | THREE-DIMENSIONAL STRUCTURE OF PHOSPHOENOLPYRUVATE CARBOXYLASE FROM ESCHERICHIA COLI AT 2.8 A RESOLUTION | 分子名称: | ASPARTIC ACID, PHOSPHOENOLPYRUVATE CARBOXYLASE | 著者 | Kai, Y, Matsumura, H, Inoue, T, Terada, K, Nagara, Y, Yoshinaga, T, Kihara, A, Izui, K. | 登録日 | 1998-05-02 | 公開日 | 1999-02-09 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Three-dimensional structure of phosphoenolpyruvate carboxylase: a proposed mechanism for allosteric inhibition. Proc.Natl.Acad.Sci.USA, 96, 1999
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5H5G
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![BU of 5h5g by Molmil](/molmil-images/mine/5h5g) | Staphylococcus aureus FtsZ-GDP in T and R states | 分子名称: | CALCIUM ION, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE | 著者 | Fujita, J, Harada, R, Maeda, Y, Saito, Y, Mizohata, E, Inoue, T, Shigeta, Y, Matsumura, H. | 登録日 | 2016-11-05 | 公開日 | 2017-05-24 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Identification of the key interactions in structural transition pathway of FtsZ from Staphylococcus aureus J. Struct. Biol., 198, 2017
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5H5I
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![BU of 5h5i by Molmil](/molmil-images/mine/5h5i) | Staphylococcus aureus FtsZ-GDP R29A mutant in R state | 分子名称: | Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE | 著者 | Fujita, J, Harada, R, Maeda, Y, Saito, Y, Mizohata, E, Inoue, T, Shigeta, Y, Matsumura, H. | 登録日 | 2016-11-05 | 公開日 | 2017-05-24 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Identification of the key interactions in structural transition pathway of FtsZ from Staphylococcus aureus J. Struct. Biol., 198, 2017
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7YPP
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![BU of 7ypp by Molmil](/molmil-images/mine/7ypp) | Structural basis of a superoxide dismutase from a tardigrade, Ramazzottius varieornatus strain YOKOZUNA-1. | 分子名称: | CALCIUM ION, COPPER (II) ION, Superoxide dismutase [Cu-Zn], ... | 著者 | Sim, K.-S, Fukuda, Y, Inoue, T. | 登録日 | 2022-08-04 | 公開日 | 2023-07-26 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structure of a superoxide dismutase from a tardigrade: Ramazzottius varieornatus strain YOKOZUNA-1. Acta Crystallogr.,Sect.F, 79, 2023
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7YPR
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![BU of 7ypr by Molmil](/molmil-images/mine/7ypr) | Structural basis of a superoxide dismutase from a tardigrade, Ramazzottius varieornatus strain YOKOZUNA-1. | 分子名称: | COPPER (II) ION, POTASSIUM ION, Superoxide dismutase [Cu-Zn], ... | 著者 | Sim, K.-S, Fukuda, Y, Inoue, T. | 登録日 | 2022-08-04 | 公開日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (2.101 Å) | 主引用文献 | Structure of a superoxide dismutase from a tardigrade: Ramazzottius varieornatus strain YOKOZUNA-1. Acta Crystallogr.,Sect.F, 79, 2023
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1M3U
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![BU of 1m3u by Molmil](/molmil-images/mine/1m3u) | Crystal Structure of Ketopantoate Hydroxymethyltransferase complexed the Product Ketopantoate | 分子名称: | 3-methyl-2-oxobutanoate hydroxymethyltransferase, KETOPANTOATE, MAGNESIUM ION | 著者 | von Delft, F, Inoue, T, Saldanha, S.A, Ottenhof, H.H, Dhanaraj, V, Witty, M, Abell, C, Smith, A.G, Blundell, T.L. | 登録日 | 2002-06-30 | 公開日 | 2003-07-22 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structure of E. coli Ketopantoate Hydroxymethyl Transferase Complexed with Ketopantoate and Mg(2+), Solved by Locating 160 Selenomethionine Sites. Structure, 11, 2003
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5H5H
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![BU of 5h5h by Molmil](/molmil-images/mine/5h5h) | Staphylococcus aureus FtsZ-GDP R29A mutant in T state | 分子名称: | CALCIUM ION, Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE | 著者 | Fujita, J, Harada, R, Maeda, Y, Saito, Y, Mizohata, E, Inoue, T, Shigeta, Y, Matsumura, H. | 登録日 | 2016-11-05 | 公開日 | 2017-05-24 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Identification of the key interactions in structural transition pathway of FtsZ from Staphylococcus aureus J. Struct. Biol., 198, 2017
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7X6G
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![BU of 7x6g by Molmil](/molmil-images/mine/7x6g) | |
7X6H
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![BU of 7x6h by Molmil](/molmil-images/mine/7x6h) | |
7X6F
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![BU of 7x6f by Molmil](/molmil-images/mine/7x6f) | Outer membrane lipoprotein QseG of Escherichia coli O157:H7 | 分子名称: | 1,2-ETHANEDIOL, ACETATE ION, CITRATE ANION, ... | 著者 | Matsumoto, K, Fukuda, Y, Inoue, T. | 登録日 | 2022-03-07 | 公開日 | 2023-03-15 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli. Acta Crystallogr.,Sect.F, 79, 2023
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1KS9
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![BU of 1ks9 by Molmil](/molmil-images/mine/1ks9) | Ketopantoate Reductase from Escherichia coli | 分子名称: | 2-DEHYDROPANTOATE 2-REDUCTASE | 著者 | Matak-Vinkovic, D, Vinkovic, M, Saldanha, S.A, Ashurst, J.A, von Delft, F, Inoue, T, Miguel, R.N, Smith, A.G, Blundell, T.L, Abell, C. | 登録日 | 2002-01-11 | 公開日 | 2002-01-25 | 最終更新日 | 2014-11-12 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal structure of Escherichia coli ketopantoate reductase at 1.7 A resolution and insight into the enzyme mechanism. Biochemistry, 40, 2001
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1BWV
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![BU of 1bwv by Molmil](/molmil-images/mine/1bwv) | Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate | 分子名称: | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) | 著者 | Sugawara, H, Yamamoto, H, Shibata, N, Inoue, T, Miyake, C, Yokota, A, Kai, Y. | 登録日 | 1998-09-29 | 公開日 | 1999-09-27 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Crystal structure of carboxylase reaction-oriented ribulose 1, 5-bisphosphate carboxylase/oxygenase from a thermophilic red alga, Galdieria partita. J.Biol.Chem., 274, 1999
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5AZ2
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![BU of 5az2 by Molmil](/molmil-images/mine/5az2) | Crystal structure of the Fab fragment of 9E5, a murine monoclonal antibody specific for human epiregulin | 分子名称: | anti-human epiregulin antibody 9E5 Fab heavy chain, anti-human epiregulin antibody 9E5 Fab light chain | 著者 | Kado, Y, Mizohata, E, Nagatoishi, S, Iijima, M, Shinoda, K, Miyafusa, T, Nakayama, T, Yoshizumi, T, Sugiyama, A, Kawamura, T, Lee, Y.H, Matsumura, H, Doi, H, Fujitani, H, Kodama, T, Shibasaki, Y, Tsumoto, K, Inoue, T. | 登録日 | 2015-09-16 | 公開日 | 2015-12-09 | 最終更新日 | 2020-02-26 | 実験手法 | X-RAY DIFFRACTION (1.603 Å) | 主引用文献 | Epiregulin Recognition Mechanisms by Anti-epiregulin Antibody 9E5: STRUCTURAL, FUNCTIONAL, AND MOLECULAR DYNAMICS SIMULATION ANALYSES J.Biol.Chem., 291, 2016
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7VPY
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![BU of 7vpy by Molmil](/molmil-images/mine/7vpy) | Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2 | 分子名称: | 1,2-ETHANEDIOL, Nanobody, SULFATE ION | 著者 | Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A. | 登録日 | 2021-10-18 | 公開日 | 2022-07-20 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron. Commun Biol, 5, 2022
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7VQ0
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![BU of 7vq0 by Molmil](/molmil-images/mine/7vq0) | Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A. | 登録日 | 2021-10-18 | 公開日 | 2022-07-20 | 実験手法 | ELECTRON MICROSCOPY (3.03 Å) | 主引用文献 | A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron. Commun Biol, 5, 2022
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4YST
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![BU of 4yst by Molmil](/molmil-images/mine/4yst) | Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 24.9 MGy | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ... | 著者 | Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E. | 登録日 | 2015-03-17 | 公開日 | 2016-02-24 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.34 Å) | 主引用文献 | Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography J.Biochem., 159, 2016
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4YSS
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![BU of 4yss by Molmil](/molmil-images/mine/4yss) | Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.7 MGy | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ... | 著者 | Fukuda, Y, Tse, K.M, Suzuki, M, Diedrichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E. | 登録日 | 2015-03-17 | 公開日 | 2016-02-24 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography J.Biochem., 159, 2016
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4YSU
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![BU of 4ysu by Molmil](/molmil-images/mine/4ysu) | Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 25.0 MGy | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ... | 著者 | Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E. | 登録日 | 2015-03-17 | 公開日 | 2016-02-24 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography J.Biochem., 159, 2016
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6A77
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![BU of 6a77 by Molmil](/molmil-images/mine/6a77) | Crystal structure of the fifth immunoglobulin domain (Ig5) of human Robo1 in complex with the Fab fragment of murine monoclonal antibody B5209B | 分子名称: | Heavy chain of the anti-human Robo1 antibody B5209B Fab, Light chain of the anti-human Robo1 antibody B5209B Fab, Roundabout homolog 1 | 著者 | Mizohata, E, Nakayama, T, Kado, Y, Inoue, T. | 登録日 | 2018-07-02 | 公開日 | 2019-01-30 | 最終更新日 | 2019-03-20 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Affinity Improvement of a Cancer-Targeted Antibody through Alanine-Induced Adjustment of Antigen-Antibody Interface. Structure, 27, 2019
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