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7F1L
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BU of 7f1l by Molmil
Designed enzyme RA61 M48K/I72D mutant: form V
分子名称: CHLORIDE ION, Engineered Retroaldolase, IMIDAZOLE
著者Fujioka, T, Oka, M, Numoto, N, Ito, N, Oda, M, Tanaka, F.
登録日2021-06-09
公開日2021-11-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions.
Chembiochem, 23, 2022
7F1H
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BU of 7f1h by Molmil
Designed enzyme RA61 M48K/I72D mutant: form I
分子名称: Engineered Retroaldolase, FORMIC ACID, GLYCEROL
著者Fujioka, T, Oka, M, Numoto, N, Ito, N, Oda, M, Tanaka, F.
登録日2021-06-09
公開日2021-11-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions.
Chembiochem, 23, 2022
7F1J
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BU of 7f1j by Molmil
Designed enzyme RA61 M48K/I72D mutant: form III
分子名称: Engineered Retroaldolase
著者Fujioka, T, Oka, M, Numoto, N, Ito, N, Oda, M, Tanaka, F.
登録日2021-06-09
公開日2021-11-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions.
Chembiochem, 23, 2022
3QA9
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BU of 3qa9 by Molmil
Crystal Structure of Prb (PH1109 protein redesigned for binding)
分子名称: CoA binding domain protein
著者Spiegel, P.C.
登録日2011-01-10
公開日2011-04-20
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A de novo protein binding pair by computational design and directed evolution.
Mol.Cell, 42, 2011
3R2X
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BU of 3r2x by Molmil
Crystal structure of the de novo designed binding protein HB36.3 in complex the the 1918 influenza virus hemagglutinin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HB36.3, designed hemagglutinin binding protein, ...
著者Ekiert, D.C, Wilson, I.A.
登録日2011-03-14
公開日2011-05-11
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Computational design of proteins targeting the conserved stem region of influenza hemagglutinin.
Science, 332, 2011
3RPT
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BU of 3rpt by Molmil
Crystal structure of the anti-HIV b12 scaffold protein
分子名称: Endoglucanase E-2, SULFATE ION
著者Chen, L, Kwong, P.D.
登録日2011-04-27
公開日2011-12-21
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.303 Å)
主引用文献Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold.
Science, 334, 2011
3RU8
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Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab
分子名称: Antibody b12, Heavy Chain, Light Chain, ...
著者Carrico, C.T.D, Strong, R.K.
登録日2011-05-04
公開日2011-11-02
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold.
Science, 334, 2011
8SK7
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BU of 8sk7 by Molmil
Cryo-EM structure of designed Influenza HA binder, HA_20, bound to Influenza HA (Strain: Iowa43)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HA_20 minibinder (RFdiffusion-designed), ...
著者Borst, A.J, Bennett, N.R.
登録日2023-04-18
公開日2023-06-14
最終更新日2024-12-11
実験手法ELECTRON MICROSCOPY (2.93 Å)
主引用文献De novo design of protein structure and function with RFdiffusion.
Nature, 620, 2023
7QFJ
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BU of 7qfj by Molmil
Crystal structure of S-layer protein SlpX from Lactobacillus acidophilus, domain II (aa 194-362)
分子名称: SlpX
著者Sagmeister, T, Pavkov-Keller, T, Buhlheller, C, Baek, M, Read, R, Baker, D.
登録日2021-12-06
公開日2022-12-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The molecular architecture of Lactobacillus S-layer: Assembly and attachment to teichoic acids.
Proc.Natl.Acad.Sci.USA, 121, 2024
8EVM
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BU of 8evm by Molmil
De novo design of chlorophyll special pair containing protein assemblies
分子名称: Chlorophyll dimer protein designs, Special Pair 3 (SP3x)
著者Bera, A.K, Ennist, N.M.
登録日2022-10-20
公開日2024-05-15
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献De novo design of proteins housing excitonically coupled chlorophyll special pairs.
Nat.Chem.Biol., 20, 2024
8GA9
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BU of 8ga9 by Molmil
C4HR1_4r: Extendable repeat protein tetramer
分子名称: C4HR1_4r
著者Bethel, N.P, Borst, A.J.
登録日2023-02-22
公開日2023-08-30
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (3.71 Å)
主引用文献Precisely patterned nanofibres made from extendable protein multiplexes.
Nat.Chem., 15, 2023
8G8I
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BU of 8g8i by Molmil
C3HR3_9r_shift4: Extendable repeat protein fiber
分子名称: C3HR3_9r_shift4
著者Bethel, N.P, Borst, A.J.
登録日2023-02-17
公開日2023-08-30
最終更新日2025-05-21
実験手法ELECTRON MICROSCOPY (3.92 Å)
主引用文献Precisely patterned nanofibres made from extendable protein multiplexes.
Nat.Chem., 15, 2023
8GAQ
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BU of 8gaq by Molmil
C5HR2_4r: Extendable repeat protein pentamer
分子名称: C5HR2_4r
著者Bethel, N.P, Borst, A.J.
登録日2023-02-23
公開日2023-08-30
最終更新日2025-06-04
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献Precisely patterned nanofibres made from extendable protein multiplexes.
Nat.Chem., 15, 2023
9HGD
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BU of 9hgd by Molmil
Crystal structure of human GABARAP in complex with cyclic peptide GAB_D23
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
著者Ueffing, A, Wilms, J.A, Willbold, D, Weiergraeber, O.H.
登録日2024-11-19
公開日2025-07-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Accurate de novo design of high-affinity protein-binding macrocycles using deep learning.
Nat.Chem.Biol., 2025
9HGC
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BU of 9hgc by Molmil
Crystal structure of human GABARAPL1 in complex with cyclic peptide GAB_D8
分子名称: GAB_D8, GLYCEROL, Gamma-aminobutyric acid receptor-associated protein-like 1, ...
著者Wilms, J.A, Willbold, D, Weiergraeber, O.H.
登録日2024-11-19
公開日2025-07-09
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Accurate de novo design of high-affinity protein-binding macrocycles using deep learning.
Nat.Chem.Biol., 2025
9F90
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BU of 9f90 by Molmil
Crystal structure of a designed three-motif Respiratory Syncytial Virus immunogen in complex with motavizumab fab
分子名称: Motavizumab Fab heavy chain, Motavizumab Fab light chain, POTASSIUM ION, ...
著者Castro, K.M, Correia, B.E.
登録日2024-05-07
公開日2025-05-21
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Accurate single domain scaffolding of three non-overlapping protein epitopes using deep learning
To Be Published
9F91
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BU of 9f91 by Molmil
Crystal structure of a designed Respiratory Syncytial Virus immunogen in complex with RSV90 fab
分子名称: Designed single epitope Respiratory Syncytial Virus immunogen in complex with RSV90 fab, RSV90 Fab heavy chain, RSV90 Fab light chain
著者Castro, K.M, Correia, B.E.
登録日2024-05-07
公開日2025-05-21
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Accurate single domain scaffolding of three non-overlapping protein epitopes using deep learning
To Be Published
9F8Y
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BU of 9f8y by Molmil
Crystal structure of a designed three-motif Respiratory Syncytial Virus immunogen
分子名称: RSVF-multi-3.5 designed scaffold
著者Castro, K.M, Correia, B.E.
登録日2024-05-07
公開日2025-05-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Accurate single domain scaffolding of three non-overlapping protein epitopes using deep learning
To Be Published
7SKN
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BU of 7skn by Molmil
De novo synthetic protein DIG8-CC (tetragonal space group)
分子名称: De novo synthetic protein DIG8-CC
著者Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X.
登録日2021-10-21
公開日2022-10-12
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献De novo design of immunoglobulin-like domains
Nat Commun, 13, 2022
7SKP
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De novo synthetic protein DIG14 (tetragonal space group)
分子名称: De novo synthetic protein DIG14
著者Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X.
登録日2021-10-21
公開日2022-10-12
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献De novo design of immunoglobulin-like domains
Nat Commun, 13, 2022
7SKO
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BU of 7sko by Molmil
De novo synthetic protein DIG8-CC (orthogonal space group)
分子名称: De novo synthetic protein DIG8-CC, MAGNESIUM ION
著者Mendes, S.R, Eckhard, U, Marcos, E, Gomis-Ruth, F.X.
登録日2021-10-21
公開日2022-10-12
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献De novo design of immunoglobulin-like domains
Nat Commun, 13, 2022
7QUX
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BU of 7qux by Molmil
Crystal structure of P7C8 bound to CK2alpha
分子名称: ADENOSINE-5'-DIPHOSPHATE, CARBAMIC ACID, Casein kinase II subunit alpha, ...
著者Atkinson, E, Iegre, J, Brear, P, Baker, D, Sore, H, Hyvonen, M, Spring, D.
登録日2022-01-19
公開日2022-12-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Development of small cyclic peptides targeting the CK2 alpha / beta interface.
Chem.Commun.(Camb.), 58, 2022
9CDU
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BU of 9cdu by Molmil
Crystal Structure of Rhombotarget A-peptide Complex
分子名称: RBB_D10 peptide, Rhombotarget A, TETRAETHYLENE GLYCOL
著者Bera, A.K, Rettie, S, Kang, A, Bhardwaj, G.
登録日2024-06-25
公開日2025-07-02
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Accurate de novo design of high-affinity protein-binding macrocycles using deep learning.
Nat.Chem.Biol., 2025
9CDV
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BU of 9cdv by Molmil
Crystal Structure of Rhombotarget A
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Rhombotarget A
著者Bera, A.K, Rettie, S, Kang, A, Bhardwaj, G.
登録日2024-06-25
公開日2025-07-02
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Accurate de novo design of high-affinity protein-binding macrocycles using deep learning.
Nat.Chem.Biol., 2025
9CDT
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BU of 9cdt by Molmil
Crystal Structure of MCL-1-Peptide Complex
分子名称: Induced myeloid leukemia cell differentiation protein Mcl-1, MCB_D2 peptide
著者Bera, A.K, Rettie, S, Kang, A, Bhardwaj, G.
登録日2024-06-25
公開日2025-07-02
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Accurate de novo design of high-affinity protein-binding macrocycles using deep learning.
Nat.Chem.Biol., 2025

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件を2025-07-09に公開中

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