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2DRD
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BU of 2drd by Molmil
Crystal structure of a multidrug transporter reveal a functionally rotating mechanism
分子名称: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE, ACRB
著者Murakami, S, Nakashima, R, Yamashita, E, Matsumoto, T.
登録日2006-06-08
公開日2006-08-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structures of a multidrug transporter reveal a functionally rotating mechanism
Nature, 443, 2006
2DR6
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Crystal structure of a multidrug transporter reveal a functionally rotating mechanism
分子名称: ACRB, DOXORUBICIN
著者Murakami, S, Nakashima, R, Yamashita, E, Matsumoto, T.
登録日2006-06-08
公開日2006-08-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structures of a multidrug transporter reveal a functionally rotating mechanism
Nature, 443, 2006
2DHH
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BU of 2dhh by Molmil
Crystal structure of a multidrug transporter reveal a functionally rotating mechanism
分子名称: ACRB
著者Murakami, S, Nakashima, R, Yamashita, E, Matsumoto, T.
登録日2006-03-23
公開日2006-08-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structures of a multidrug transporter reveal a functionally rotating mechanism
Nature, 443, 2006
2DR8
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BU of 2dr8 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDC and CTP
分子名称: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR9
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BU of 2dr9 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDCC
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (34-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2EQB
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BU of 2eqb by Molmil
Crystal structure of the Rab GTPase Sec4p, the Sec2p GEF domain, and phosphate complex
分子名称: PHOSPHATE ION, Rab guanine nucleotide exchange factor SEC2, Ras-related protein SEC4
著者Sato, Y, Fukai, S, Ishitani, R, Nureki, O.
登録日2007-03-30
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of the Sec4p{middle dot}Sec2p complex in the nucleotide exchanging intermediate state
Proc.Natl.Acad.Sci.Usa, 104, 2007
2DRA
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BU of 2dra by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDCC and ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CCA-adding enzyme, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR5
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BU of 2dr5 by Molmil
Complex structure of CCA adding enzyme with mini-helix lacking CCA
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (32-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-10-31
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DRB
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BU of 2drb by Molmil
Complex structure of CCA-adding enzyme with tRNAminiCCA
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (35-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DR7
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BU of 2dr7 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDC
分子名称: CCA-adding enzyme, SULFATE ION, tRNA (33-MER)
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-06-08
公開日2006-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DVI
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BU of 2dvi by Molmil
Complex structure of CCA-adding enzyme, mini-DCC and CTP
分子名称: CCA-adding enzyme, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
登録日2006-07-31
公開日2006-11-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2EL9
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BU of 2el9 by Molmil
Crystal structure of E.coli Histidyl-tRNA synthetase complexed with a histidyl-adenylate analogue
分子名称: 5'-O-[(L-HISTIDYLAMINO)SULFONYL]ADENOSINE, Histidyl-tRNA synthetase
著者Yanagisawa, T, Si, S.Y, Matsuno, M, Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-27
公開日2008-03-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of E.coli Histidyl-tRNA synthetase complexed with a histidyl-adenylate analogue
To be published
5B1S
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BU of 5b1s by Molmil
Crystal structure of Trypanosoma cruzi spermidine synthase in complex with 2-(2-fluorophenyl)ethanamine
分子名称: 2-(2-fluorophenyl)ethanamine, 5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINE, Spermidine synthase, ...
著者Amano, Y, Tateishi, Y.
登録日2015-12-17
公開日2016-12-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献In silico, in vitro, X-ray crystallography, and integrated strategies for discovering spermidine synthase inhibitors for Chagas disease
Sci Rep, 7, 2017
7B7V
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BU of 7b7v by Molmil
Structure of NUDT15 in complex with Acyclovir monophosphate
分子名称: 2-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)methoxy]ethyl dihydrogen phosphate, CHLORIDE ION, MAGNESIUM ION, ...
著者Rehling, D, Stenmark, P.
登録日2020-12-11
公開日2021-05-19
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献NUDT15 polymorphism influences the metabolism and therapeutic effects of acyclovir and ganciclovir.
Nat Commun, 12, 2021
5Y4P
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BU of 5y4p by Molmil
Crystal structure of Trypanosoma cruzi spermidine synthase in complex with 5-methoxy-2-(5-methyl-4,5-dihydro-1H-imidazol-2-yl)phenol
分子名称: 5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINE, 5-methoxy-2-[(5R)-5-methyl-4,5-dihydro-1H-imidazol-2-yl]phenol, Spermidine synthase, ...
著者Amano, Y, Tateishi, Y.
登録日2017-08-04
公開日2018-08-08
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Discovery of a Hidden Trypanosoma cruzi Spermidine Synthase Binding Site and Inhibitors through In Silico, In Vitro , and X-ray Crystallography.
Acs Omega, 8, 2023
7W3O
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BU of 7w3o by Molmil
Crystal structure of human CYB5R3
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3 soluble form
著者Noda, N.N.
登録日2021-11-25
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
7W3N
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BU of 7w3n by Molmil
Crystal structure of Ufm1 fused to UFBP1 UFIM
分子名称: UFBP1 peptide,Ubiquitin-fold modifier 1
著者Noda, N.N.
登録日2021-11-25
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
2R5Z
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BU of 2r5z by Molmil
Structure of Scr/Exd complex bound to a DNA sequence derived from the fkh gene
分子名称: DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DAP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DGP*DAP*DTP*DTP*DAP*DAP*DTP*DCP*DTP*DTP*DAP*DGP*DAP*DG)-3'), Homeobox protein extradenticle, ...
著者Aggarwal, A.K, Passner, J.M, Jain, R.
登録日2007-09-04
公開日2008-02-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Functional specificity of a Hox protein mediated by the recognition of minor groove structure
Cell(Cambridge,Mass.), 131, 2007
2R5Y
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Structure of Scr/Exd complex bound to a consensus Hox-Exd site
分子名称: DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3'), Homeobox protein extradenticle, ...
著者Aggarwal, A.K, Passner, J.M, Jain, R.
登録日2007-09-04
公開日2008-02-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Functional specificity of a Hox protein mediated by the recognition of minor groove structure
Cell(Cambridge,Mass.), 131, 2007
5Y4Q
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BU of 5y4q by Molmil
Crystal structure of Trypanosoma cruzi spermidine synthase in complex with N-(4-methoxyphenyl)quinolin-4-amine
分子名称: 5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINE, N-(4-methoxyphenyl)quinolin-4-amine, Spermidine synthase, ...
著者Amano, Y, Tateishi, Y.
登録日2017-08-04
公開日2018-08-08
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Discovery of a Hidden Trypanosoma cruzi Spermidine Synthase Binding Site and Inhibitors through In Silico, In Vitro , and X-ray Crystallography.
Acs Omega, 8, 2023
3JVY
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BU of 3jvy by Molmil
HIV-1 Protease Mutant G86A with DARUNAVIR
分子名称: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, CHLORIDE ION, Gag-Pol polyprotein, ...
著者Tie, Y, Weber, I.T.
登録日2009-09-17
公開日2009-12-08
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Highly conserved glycine 86 and arginine 87 residues contribute differently to the structure and activity of the mature HIV-1 protease
Proteins, 78, 2009
3JVW
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BU of 3jvw by Molmil
HIV-1 Protease Mutant G86A with symmetric inhibitor DMP323
分子名称: Gag-Pol polyprotein, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE
著者Tie, Y, Weber, I.T.
登録日2009-09-17
公開日2009-12-08
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Highly conserved glycine 86 and arginine 87 residues contribute differently to the structure and activity of the mature HIV-1 protease
Proteins, 78, 2009
3JW2
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BU of 3jw2 by Molmil
HIV-1 Protease Mutant G86S with DARUNAVIR
分子名称: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, CHLORIDE ION, Gag-Pol polyprotein, ...
著者Tie, Y, Weber, I.T.
登録日2009-09-17
公開日2009-12-08
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Highly conserved glycine 86 and arginine 87 residues contribute differently to the structure and activity of the mature HIV-1 protease
Proteins, 78, 2009
2LF4
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Structure of a monomeric mutant of the HIV-1 capsid protein
分子名称: Gag polyprotein
著者Shin, R.S, Tzou, Y, Krishna, N.
登録日2011-06-28
公開日2011-11-09
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structure of a Monomeric Mutant of the HIV-1 Capsid Protein.
Biochemistry, 50, 2011
5UUG
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BU of 5uug by Molmil
Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing an abasic site (9-mer product complex)
分子名称: CALCIUM ION, DNA (5'-D(*AP*GP*GP*CP*AP*(ORP)P*AP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*TP*TP*TP*GP*CP*C)-3'), ...
著者Mullins, E.A, Eichman, B.F.
登録日2017-02-16
公開日2017-07-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.712 Å)
主引用文献Toxicity and repair of DNA adducts produced by the natural product yatakemycin.
Nat. Chem. Biol., 13, 2017

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