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5AZW
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BU of 5azw by Molmil
Crystal structure of p24beta1 GOLD domain
分子名称: 1,2-ETHANEDIOL, Transmembrane emp24 domain-containing protein 2
著者Nagae, M, Yamaguchi, Y.
登録日2015-10-23
公開日2016-09-14
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5AZY
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BU of 5azy by Molmil
Crystal structure of p24delta1 GOLD domain (Native 2)
分子名称: 1,2-ETHANEDIOL, SULFATE ION, Transmembrane emp24 domain-containing protein 10
著者Nagae, M, Yamaguchi, Y.
登録日2015-10-23
公開日2016-09-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5B7E
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BU of 5b7e by Molmil
Structure of perdeuterated CueO
分子名称: Blue copper oxidase CueO, COPPER (II) ION, CU-O-CU LINKAGE, ...
著者Akter, M, Higuchi, Y, Shibata, N.
登録日2016-06-07
公開日2016-10-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Biochemical, spectroscopic and X-ray structural analysis of deuterated multicopper oxidase CueO prepared from a new expression construct for neutron crystallography
Acta Crystallogr.,Sect.F, 72, 2016
5B7M
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BU of 5b7m by Molmil
Structure of perdeuterated CueO - the signal peptide was truncated by HRV3C protease
分子名称: Blue copper oxidase CueO, COPPER (II) ION
著者Akter, M, Higuchi, Y, Shibata, N.
登録日2016-06-07
公開日2016-10-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Biochemical, spectroscopic and X-ray structural analysis of deuterated multicopper oxidase CueO prepared from a new expression construct for neutron crystallography
Acta Crystallogr.,Sect.F, 72, 2016
3AN1
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BU of 3an1 by Molmil
Crystal structure of rat D428A mutant, urate bound form
分子名称: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Okamoto, K, Kawaguchi, Y, Eger, B.T, Pai, E.F, Nishino, T.
登録日2010-08-27
公開日2010-12-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate
J.Am.Chem.Soc., 132, 2010
3VUZ
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BU of 3vuz by Molmil
Crystal structure of histone methyltransferase SET7/9 in complex with AAM-1
分子名称: 5'-{[(3S)-3-amino-3-carboxypropyl](hexyl)amino}-5'-deoxyadenosine, Histone-lysine N-methyltransferase SETD7
著者Niwa, H, Handa, N, Tomabechi, Y, Honda, K, Toyama, M, Ohsawa, N, Shirouzu, M, Kagechika, H, Hirano, T, Umehara, T, Yokoyama, S.
登録日2012-07-10
公開日2013-03-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of histone methyltransferase SET7/9 in complexes with adenosylmethionine derivatives
Acta Crystallogr.,Sect.D, 69, 2013
3AT9
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BU of 3at9 by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride and 10 mM magnesium chloride)
分子名称: MAGNESIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3AQP
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BU of 3aqp by Molmil
Crystal structure of SecDF, a translocon-associated membrane protein, from Thermus thrmophilus
分子名称: Probable SecDF protein-export membrane protein
著者Tsukazaki, T, Mori, H, Echizen, Y, Ishitani, R, Fukai, S, Tanaka, T, Perederina, A, Vassylyev, D.G, Kohno, T, Ito, K, Nureki, O.
登録日2010-11-16
公開日2011-05-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
3AEY
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BU of 3aey by Molmil
Apo form of threonine synthase from Thermus thermophilus HB8
分子名称: SULFATE ION, Threonine synthase
著者Murakawa, T, Machida, Y, Hayashi, H.
登録日2010-02-17
公開日2010-11-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Product-assisted catalysis as the basis of the reaction specificity of threonine synthase.
J.Biol.Chem., 286, 2011
5B1X
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BU of 5b1x by Molmil
Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in complex with biantennary glycan
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, C-type lectin domain family 4 member A, CALCIUM ION
著者Nagae, M, Yamaguchi, Y.
登録日2015-12-21
公開日2016-05-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.902 Å)
主引用文献Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan
Febs Lett., 590, 2016
3VV0
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BU of 3vv0 by Molmil
Crystal structure of histone methyltransferase SET7/9 in complex with DAAM-3
分子名称: 5'-{[(3S)-3-amino-3-carboxypropyl][2-(hexylamino)ethyl]amino}-5'-deoxyadenosine, Histone-lysine N-methyltransferase SETD7
著者Niwa, H, Handa, N, Tomabechi, Y, Honda, K, Toyama, M, Ohsawa, N, Shirouzu, M, Kagechika, H, Hirano, T, Umehara, T, Yokoyama, S.
登録日2012-07-10
公開日2013-03-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献Structures of histone methyltransferase SET7/9 in complexes with adenosylmethionine derivatives
Acta Crystallogr.,Sect.D, 69, 2013
5AZX
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BU of 5azx by Molmil
Crystal structure of p24delta1 GOLD domain (native 1)
分子名称: SULFATE ION, Transmembrane emp24 domain-containing protein 10
著者Nagae, M, Yamaguchi, Y.
登録日2015-10-23
公開日2016-09-14
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
3ATB
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BU of 3atb by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM Gadolinium chloride)
分子名称: GADOLINIUM ATOM, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3AUW
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BU of 3auw by Molmil
Cytoplasmic domain of inward rectifier potassium channel Kir3.2 in complex with cadmium
分子名称: CADMIUM ION, ETHANOL, MAGNESIUM ION, ...
著者Inanobe, A, Kurachi, Y.
登録日2011-02-17
公開日2011-10-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.56 Å)
主引用文献Inverse agonist-like action of cadmium on G-protein-gated inward-rectifier K(+) channels
Biochem.Biophys.Res.Commun., 407, 2011
3AT8
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BU of 3at8 by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride)
分子名称: BARIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ATF
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BU of 3atf by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 200 mM Cesium chloride)
分子名称: CESIUM ION, ETHANOL, MAGNESIUM ION, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ATD
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BU of 3atd by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM Gadolinium chloride and 10 mM magnesium chloride)
分子名称: GADOLINIUM ATOM, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.01 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ATA
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BU of 3ata by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM barium chloride and 10 mM Spermine)
分子名称: BARIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.49 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ATE
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BU of 3ate by Molmil
Crystal Structure of the Kir3.2 Cytoplasmic Domain (Na+-free crystal soaked in 10 mM praseodymium (III) acetate)
分子名称: PRASEODYMIUM ION, Potassium inwardly-rectifying channel, subfamily J, ...
著者Inanobe, A, Kurachi, Y.
登録日2010-12-28
公開日2011-10-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Interactions of cations with the cytoplasmic pores of inward rectifier K(+) channels in the closed state
J.Biol.Chem., 286, 2011
3ALB
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BU of 3alb by Molmil
Cyclic Lys48-linked tetraubiquitin
分子名称: SULFATE ION, ubiquitin
著者Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K.
登録日2010-07-29
公開日2010-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of cyclic Lys48-linked tetraubiquitin
Biochem.Biophys.Res.Commun., 2010
7BQV
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BU of 7bqv by Molmil
Cereblon in complex with SALL4 and (S)-5-hydroxythalidomide
分子名称: 2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-5-oxidanyl-isoindole-1,3-dione, Protein cereblon, SULFATE ION, ...
著者Furihata, H, Miyauchi, Y, Asano, A, Tanokura, M, Miyakawa, T.
登録日2020-03-25
公開日2020-08-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural bases of IMiD selectivity that emerges by 5-hydroxythalidomide.
Nat Commun, 11, 2020
5GZ8
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BU of 5gz8 by Molmil
Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form
分子名称: Protein O-mannose kinase
著者Nagae, M, Yamaguchi, Y.
登録日2016-09-27
公開日2017-03-29
最終更新日2017-12-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
7BQU
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BU of 7bqu by Molmil
Cereblon in complex with SALL4 and (S)-thalidomide
分子名称: Protein cereblon, S-Thalidomide, Sal-like protein 4, ...
著者Furihata, H, Miyauchi, Y, Asano, A, Tanokura, M, Miyakawa, T.
登録日2020-03-25
公開日2020-08-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural bases of IMiD selectivity that emerges by 5-hydroxythalidomide.
Nat Commun, 11, 2020
7CKE
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BU of 7cke by Molmil
Solution structure of NCR169 oxidized form 2 from Medicago truncatula
分子名称: Nodule Cysteine-Rich (NCR) secreted peptide
著者Isozumi, N, Masubuchi, Y, Ohki, S.
登録日2020-07-16
公開日2021-05-26
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure and antimicrobial activity of NCR169, a nodule-specific cysteine-rich peptide of Medicago truncatula.
Sci Rep, 11, 2021
7CKD
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BU of 7ckd by Molmil
Solution structure of NCR169 oxidized form 1 from Medicago truncatula
分子名称: Nodule Cysteine-Rich (NCR) secreted peptide
著者Isozumi, N, Masubuchi, Y, Ohki, S.
登録日2020-07-16
公開日2021-05-26
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure and antimicrobial activity of NCR169, a nodule-specific cysteine-rich peptide of Medicago truncatula.
Sci Rep, 11, 2021

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