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2ZF5
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BU of 2zf5 by Molmil
Crystal Structure of highly thermostable glycerol kinase from a hyperthermophilic archaeon
分子名称: Glycerol kinase
著者Koga, Y, Katsumi, R, You, D.-J, Matsumura, H, Takano, K, Kanaya, S.
登録日2007-12-20
公開日2008-05-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of highly thermostable glycerol kinase from a hyperthermophilic archaeon in a dimeric form
Febs J., 275, 2008
2ZVD
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BU of 2zvd by Molmil
Crystal structure of Pseudomonas sp. MIS38 lipase in an open conformation
分子名称: CALCIUM ION, Lipase
著者Angkawidjaja, C, Matsumura, H, Koga, Y, Takano, K, Kanaya, S.
登録日2008-11-05
公開日2009-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids
J.Mol.Biol., 2010
2ZNR
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BU of 2znr by Molmil
Crystal structure of the DUB domain of human AMSH-LP
分子名称: 1,2-ETHANEDIOL, AMSH-like protease, PRASEODYMIUM ION, ...
著者Sato, Y, Azusa, Y, Yamagata, A, Mimura, H, Wang, X, Yamashita, M, Ookata, K, Nureki, O, Iwai, K, Komada, M, Fukai, S.
登録日2008-05-01
公開日2008-09-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains
Nature, 455, 2008
6AHS
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BU of 6ahs by Molmil
Mouse Kallikrein 7 in complex with imidazolinylindole derivative
分子名称: 1-[(2-chlorophenyl)sulfonyl]-5-methyl-3-[(4R)-2-methyl-4,5-dihydro-1H-imidazol-4-yl]-1H-indole, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
著者Sugawara, H.
登録日2018-08-20
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Discovery and structure-activity relationship of imidazolinylindole derivatives as kallikrein 7 inhibitors.
Bioorg. Med. Chem. Lett., 29, 2019
5ZHS
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BU of 5zhs by Molmil
Crystal structure of OsD14 in complex with covalently bound KK052
分子名称: (4-phenylpiperazin-1-yl)(1H-1,2,3-triazol-1-yl)methanone, Strigolactone esterase D14
著者Hirabayashi, K, Miyakawa, T, Tanokura, M.
登録日2018-03-13
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Triazole Ureas Covalently Bind to Strigolactone Receptor and Antagonize Strigolactone Responses.
Mol Plant, 12, 2019
5ZHT
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BU of 5zht by Molmil
Crystal structure of OsD14 in complex with covalently bound KK073
分子名称: (1H-1,2,3-triazol-1-yl){4-[4-(trifluoromethyl)phenyl]piperazin-1-yl}methanone, Strigolactone esterase D14
著者Hirabayashi, K, Miyakawa, T, Tanokura, M.
登録日2018-03-13
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.532 Å)
主引用文献Triazole Ureas Covalently Bind to Strigolactone Receptor and Antagonize Strigolactone Responses.
Mol Plant, 12, 2019
5ZHR
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BU of 5zhr by Molmil
Crystal structure of OsD14 in complex with covalently bound KK094
分子名称: (2,3-dihydro-1H-indol-1-yl)(1H-1,2,3-triazol-1-yl)methanone, Strigolactone esterase D14
著者Hirabayashi, K, Miyakawa, T, Tanokura, M.
登録日2018-03-13
公開日2018-11-21
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Triazole Ureas Covalently Bind to Strigolactone Receptor and Antagonize Strigolactone Responses.
Mol Plant, 12, 2019
3VXK
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BU of 3vxk by Molmil
Crystal structure of OsD14
分子名称: Dwarf 88 esterase
著者Xue, Y.-L, Miyakawa, T, Hou, F, Qin, H.-M, Tanokura, M.
登録日2012-09-18
公開日2013-09-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Molecular mechanism of strigolactone perception by DWARF14
Nat Commun, 4, 2013
3WIO
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BU of 3wio by Molmil
Crystal structure of OSD14 in complex with hydroxy D-ring
分子名称: (5R)-5-hydroxy-3-methylfuran-2(5H)-one, Probable strigolactone esterase D14
著者Xue, Y.-L, Miyakawa, T, Hou, F, Qin, H.-M, Tanokura, M.
登録日2013-09-22
公開日2013-10-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular mechanism of strigolactone perception by DWARF14
Nat Commun, 4, 2013
5B4O
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BU of 5b4o by Molmil
Crystal structure of Macrophage Migration Inhibitory Factor in complex with BTZO-14
分子名称: 1,2-ETHANEDIOL, 2-pyridin-3-yl-1,3-benzothiazin-4-one, Macrophage migration inhibitory factor, ...
著者Oki, H, Igaki, S, Moriya, Y, Hayano, Y, Habuka, N.
登録日2016-04-07
公開日2016-04-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献BTZO-1, a cardioprotective agent, reveals that macrophage migration inhibitory factor regulates ARE-mediated gene expression
Chem. Biol., 17, 2010
3B4X
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BU of 3b4x by Molmil
Crystal Structure Analysis of Sulfolobus tokodaii strain7 cytochrom P450
分子名称: 367aa long hypothetical cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE
著者Kamitori, S, Yoshida, H, Ohtaki, A, Nakamura, N.
登録日2007-10-24
公開日2008-11-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Monooxygenation by Thermophilic Cytochrome P450 via Direct Electron Transfer from NADH without Redox Partner
To be Published
5ZFI
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BU of 5zfi by Molmil
Mouse kallikrein 7 in complex with 6-benzyl-1,4-diazepan-7-one derivative
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[(3Z,6R)-6-[(2,6-dichlorophenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxo-1,4-diazepan-1-yl]-N-[3-(1-methyl-1H-pyrazol-4-yl)phenyl]acetamide, Kallikrein-7
著者Sugawara, H.
登録日2018-03-06
公開日2018-06-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure-based drug design to overcome species differences in kallikrein 7 inhibition of 1,3,6-trisubstituted 1,4-diazepan-7-ones.
Bioorg. Med. Chem., 26, 2018
5ZFH
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BU of 5zfh by Molmil
Mouse Kallikrein 7
分子名称: Kallikrein-7
著者Sugawara, H.
登録日2018-03-06
公開日2018-06-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structure-based drug design to overcome species differences in kallikrein 7 inhibition of 1,3,6-trisubstituted 1,4-diazepan-7-ones.
Bioorg. Med. Chem., 26, 2018
5Y9L
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BU of 5y9l by Molmil
Human kallikrein 7 in complex with 1,3,6-trisubstituted 1,4-diazepane-7-one
分子名称: 3-[2-[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]ethanoylamino]benzoic acid, CHLORIDE ION, Kallikrein-7
著者Sugawara, H.
登録日2017-08-25
公開日2017-11-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Discovery and structure-activity relationship study of 1,3,6-trisubstituted 1,4-diazepane-7-ones as novel human kallikrein 7 inhibitors
Bioorg. Med. Chem. Lett., 27, 2017
5YJK
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BU of 5yjk by Molmil
Human kallikrein 7 in complex with 1,4-diazepane-7-one 1-acetamide derivative
分子名称: (R)-2-(6-(5-chloro-2-methoxybenzyl)-3-(2,2-dimethylhydrazono)-7-oxo-1,4-diazepan-1-yl)-N-(3-(methylsulfonyl)phenyl)acetamide, CHLORIDE ION, Kallikrein-7
著者Sugawara, H.
登録日2017-10-11
公開日2017-12-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery and structure-activity relationship study of 1,3,6-trisubstituted 1,4-diazepane-7-ones as novel human kallikrein 7 inhibitors
Bioorg. Med. Chem. Lett., 27, 2017
2E1A
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BU of 2e1a by Molmil
crystal structure of FFRP-DM1
分子名称: 75aa long hypothetical regulatory protein AsnC, SELENOMETHIONINE
著者Koike, H, Suzuki, M.
登録日2006-10-19
公開日2007-09-18
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Structural Code for Discriminating between Transcription Signals Revealed by the Feast/Famine Regulatory Protein DM1 in Complex with Ligands
Structure, 15, 2007
2Z4P
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BU of 2z4p by Molmil
Crystal structure of FFRP-DM1
分子名称: 75aa long hypothetical regulatory protein AsnC, ISOLEUCINE
著者Yamada, M, Koike, H, Kudo, N, Suzuki, M.
登録日2007-06-21
公開日2007-09-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献A Structural Code for Discriminating between Transcription Signals Revealed by the Feast/Famine Regulatory Protein DM1 in Complex with Ligands
Structure, 15, 2007
3A7D
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BU of 3a7d by Molmil
Crystal Structures of rat Catechol-O-Methyltransferase complexed with new bi-substrate type inhibitor
分子名称: 5'-deoxy-5'-[4-({[(2,3-dihydroxy-5-nitrophenyl)carbonyl]amino}methyl)-1H-1,2,3-triazol-1-yl]adenosine, Catechol O-methyltransferase, MAGNESIUM ION, ...
著者Tsuji, E.
登録日2009-09-26
公開日2010-09-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Hit to Lead: Comprehensive Strategy of de novo Scaffold Generation by FBDD. Part 2: Ligand Fishing using Mass Spectrometry by Detection of Ligand-Protein Non-Covalent Complex after Matrix Click Chemistry
To be Published
4FXC
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BU of 4fxc by Molmil
TERTIARY STRUCTURE OF [2FE-2S] FERREDOXIN FROM SPIRULINA PLATENSIS REFINED AT 2.5 ANGSTROMS RESOLUTION: STRUCTURAL COMPARISONS OF PLANT-TYPE FERREDOXINS AND AN ELECTROSTATIC POTENTIAL ANALYSIS
分子名称: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN
著者Fukuyama, K, Tsukihara, T.
登録日1995-04-25
公開日1995-12-07
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Tertiary structure of [2Fe-2S] ferredoxin from Spirulina platensis refined at 2.5 A resolution: structural comparisons of plant-type ferredoxins and an electrostatic potential analysis.
J.Biochem.(Tokyo), 117, 1995
1DJU
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BU of 1dju by Molmil
CRYSTAL STRUCTURE OF AROMATIC AMINOTRANSFERASE FROM PYROCOCCUS HORIKOSHII OT3
分子名称: AROMATIC AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
著者Matsui, I, Matsui, E, Sakai, Y, Kikuchi, H, Kawarabayashi, H.
登録日1999-12-06
公開日2001-04-11
最終更新日2018-04-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The molecular structure of hyperthermostable aromatic aminotransferase with novel substrate specificity from Pyrococcus horikoshii.
J.Biol.Chem., 275, 2000
6GF6
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BU of 6gf6 by Molmil
Molecular basis of egg coat filament cross-linking: high-resolution structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
6GF7
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BU of 6gf7 by Molmil
Molecular basis of egg coat filament cross-linking: Zn-SAD structure of the partially deglycosylated ZP1 ZP-N1 domain homodimer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ZINC ION, Zona pellucida sperm-binding protein 1,Zona pellucida sperm-binding protein 1
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
6GF8
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BU of 6gf8 by Molmil
Molecular basis of egg coat filament cross-linking: structure of the glycosylated ZP1 ZP-N1 domain homodimer
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Nishimura, K, Jovine, L.
登録日2018-04-29
公開日2019-06-19
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Nat Commun, 10, 2019
1WW9
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BU of 1ww9 by Molmil
Crystal structure of the terminal oxygenase component of carbazole 1,9a-dioxygenase, a non-heme iron oxygenase system catalyzing the novel angular dioxygenation for carbazole and dioxin
分子名称: FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, terminal oxygenase component of carbazole
著者Nojiri, H, Ashikawa, Y, Noguchi, H, Nam, J.-W, Urata, M, Fujimoto, Z, Mizuno, H, Yoshida, T, Habe, H, Omori, T.
登録日2005-01-05
公開日2005-08-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenase
J.Mol.Biol., 351, 2005
5WQK
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BU of 5wqk by Molmil
Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1
分子名称: 4-methyl-2-(2-naphthalen-1-yl-2-oxidanylidene-ethyl)sulfanyl-1~{H}-pyrimidin-6-one, SODIUM ION, Sulfurtransferase
著者Suwanai, Y, Toma-Fukai, S, Shimizu, T.
登録日2016-11-27
公開日2017-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide
Sci Rep, 7, 2017

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