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2ZQD
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BU of 2zqd by Molmil
Ceftazidime acyl-intermediate structure of class a beta-lact Toho-1 E166A/R274N/R276N triple mutant
分子名称: ACYLATED CEFTAZIDIME, Beta-lactamase Toho-1, SULFATE ION
著者Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
登録日2008-08-07
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQA
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BU of 2zqa by Molmil
Cefotaxime acyl-intermediate structure of class a beta-lacta Toho-1 E166A/R274N/R276N triple mutant
分子名称: Beta-lactamase Toho-1, CEFOTAXIME, C3' cleaved, ...
著者Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
登録日2008-08-07
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
2ZQC
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BU of 2zqc by Molmil
Aztreonam acyl-intermediate structure of class a beta-lactam Toho-1 E166A/R274N/R276N triple mutant
分子名称: 2-({[(1Z)-1-(2-amino-1,3-thiazol-4-yl)-2-oxo-2-{[(2S,3S)-1-oxo-3-(sulfoamino)butan-2-yl]amino}ethylidene]amino}oxy)-2-methylpropanoic acid, Beta-lactamase Toho-1, SULFATE ION
著者Nitanai, Y, Shimamura, T, Uchiyama, T, Ishii, Y, Takehira, M, Yutani, K, Matsuzawa, H, Miyano, M.
登録日2008-08-07
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献Structural Basis of Extend Spectrum Beta-Lactamase in Correlation of Enzymatic Kinetics and Thermal Stability of Acyl-Intermediates
To be Published
3WWX
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BU of 3wwx by Molmil
Crystal structure of D-stereospecific amidohydrolase from Streptomyces sp. 82F2
分子名称: OCTANE 1,8-DIAMINE, S12 family peptidase
著者Arima, J, Nagano, S, Hino, T, Shimone, K, Isoda, Y, Mori, N.
登録日2014-07-03
公開日2015-07-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Crystal structure of D-stereospecific amidohydrolase from Streptomyces sp. 82F2 - insight into the structural factors for substrate specificity.
Febs J., 283, 2016
1BD0
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BU of 1bd0 by Molmil
ALANINE RACEMASE COMPLEXED WITH ALANINE PHOSPHONATE
分子名称: ALANINE RACEMASE, {1-[(3-HYDROXY-METHYL-5-PHOSPHONOOXY-METHYL-PYRIDIN-4-YLMETHYL)-AMINO]-ETHYL}-PHOSPHONIC ACID
著者Stamper, G.F, Morollo, A.A, Ringe, D.
登録日1998-05-12
公開日1998-10-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Reaction of alanine racemase with 1-aminoethylphosphonic acid forms a stable external aldimine.
Biochemistry, 37, 1998
1CYC
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BU of 1cyc by Molmil
THE CRYSTAL STRUCTURE OF BONITO (KATSUO) FERROCYTOCHROME C AT 2.3 ANGSTROMS RESOLUTION. II. STRUCTURE AND FUNCTION
分子名称: FERROCYTOCHROME C, HEME C
著者Tanaka, N, Yamane, T, Tsukihara, T, Ashida, T, Kakudo, M.
登録日1976-08-01
公開日1976-10-06
最終更新日2021-03-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The crystal structure of bonito (katsuo) ferrocytochrome c at 2.3 A resolution. II. Structure and function.
J.Biochem.(Tokyo), 77, 1975
3TMN
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BU of 3tmn by Molmil
THE BINDING OF L-VALYL-L-TRYPTOPHAN TO CRYSTALLINE THERMOLYSIN ILLUSTRATES THE MODE OF INTERACTION OF A PRODUCT OF PEPTIDE HYDROLYSIS
分子名称: CALCIUM ION, THERMOLYSIN, TRYPTOPHAN, ...
著者Holden, H.M, Matthews, B.W.
登録日1987-06-29
公開日1989-01-09
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The binding of L-valyl-L-tryptophan to crystalline thermolysin illustrates the mode of interaction of a product of peptide hydrolysis.
J.Biol.Chem., 263, 1988
2DS1
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BU of 2ds1 by Molmil
Human cyclin dependent kinase 2 complexed with the CDK4 inhibitor
分子名称: (13R,15S)-13-METHYL-16-OXA-8,9,12,22,24-PENTAAZAHEXACYCLO[15.6.2.16,9.1,12,15.0,2,7.0,21,25]HEPTACOSA-1(24),2,4,6,17(25 ),18,20-HEPTAENE-23,26-DIONE, Cell division protein kinase 2
著者Ikuta, M.
登録日2006-06-17
公開日2007-06-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-based drug design of a highly potent CDK1,2,4,6 inhibitor with novel macrocyclic quinoxalin-2-one structure
Bioorg.Med.Chem.Lett., 16, 2006
5XGC
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BU of 5xgc by Molmil
Crystal structure of SmgGDS-558
分子名称: Rap1 GTPase-GDP dissociation stimulator 1
著者Shimizu, H, Toma-Fukai, S, Shimizu, T.
登録日2017-04-13
公開日2017-06-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure-based analysis of the guanine nucleotide exchange factor SmgGDS reveals armadillo-repeat motifs and key regions for activity and GTPase binding
J. Biol. Chem., 292, 2017
7W8V
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BU of 7w8v by Molmil
DMSPP- and Trp-bound 6-dimethylallyl tryptophan synthase, IptA
分子名称: 6-dimethylallyltryptophan synthase, DIMETHYLALLYL S-THIOLODIPHOSPHATE, SULFATE ION, ...
著者Suemune, H, Nagano, S, Tomoya, H.
登録日2021-12-08
公開日2022-10-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Crystal structures of a 6-dimethylallyltryptophan synthase, IptA: Insights into substrate tolerance and enhancement of prenyltransferase activity.
Biochem.Biophys.Res.Commun., 593, 2022
7W8Y
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BU of 7w8y by Molmil
DMSPP- and Naplha-Me-Trp-bound 6-dimethylallyl tryptophan synthase, IptA
分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 6-dimethylallyltryptophan synthase, ...
著者Suemune, H, Nagano, S.
登録日2021-12-08
公開日2022-10-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Crystal structures of a 6-dimethylallyltryptophan synthase, IptA: Insights into substrate tolerance and enhancement of prenyltransferase activity.
Biochem.Biophys.Res.Commun., 593, 2022
7W8X
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BU of 7w8x by Molmil
DMSPP- and 6-Me-Trp-bound dimethylallyl tryptophan synthase, IptA
分子名称: (2S)-2-azanyl-3-(6-methyl-1H-indol-3-yl)propanoic acid, 6-dimethylallyltryptophan synthase, DIMETHYLALLYL S-THIOLODIPHOSPHATE, ...
著者Suemune, H, Nagano, S, Tomoya, H.
登録日2021-12-08
公開日2022-10-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structures of a 6-dimethylallyltryptophan synthase, IptA: Insights into substrate tolerance and enhancement of prenyltransferase activity.
Biochem.Biophys.Res.Commun., 593, 2022
7W8W
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BU of 7w8w by Molmil
DMSPP- and 5-Me-Trp-bound 6-dimethylallyl tryptophan synthase, IptA
分子名称: 5-methyl-L-tryptophan, 6-dimethylallyltryptophan synthase, DIMETHYLALLYL S-THIOLODIPHOSPHATE, ...
著者Suemune, H, Nagano, S, Tomoya, H.
登録日2021-12-08
公開日2022-10-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of a 6-dimethylallyltryptophan synthase, IptA: Insights into substrate tolerance and enhancement of prenyltransferase activity.
Biochem.Biophys.Res.Commun., 593, 2022
7W8U
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BU of 7w8u by Molmil
Crystal Structure of Indole Prenyltransferase IptA
分子名称: 6-dimethylallyltryptophan synthase
著者Suemune, H, Nagano, S.
登録日2021-12-08
公開日2022-10-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structures of a 6-dimethylallyltryptophan synthase, IptA: Insights into substrate tolerance and enhancement of prenyltransferase activity.
Biochem.Biophys.Res.Commun., 593, 2022
4CTS
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BU of 4cts by Molmil
CRYSTAL STRUCTURE ANALYSIS AND MOLECULAR MODEL OF A COMPLEX OF CITRATE SYNTHASE WITH OXALOACETATE AND S-ACETONYL-COENZYME A
分子名称: CITRATE SYNTHASE, OXALOACETATE ION
著者Remington, S, Wiegand, G, Huber, R.
登録日1984-01-27
公開日1984-07-20
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure analysis and molecular model of a complex of citrate synthase with oxaloacetate and S-acetonyl-coenzyme A
J.Mol.Biol., 174, 1984
4CSC
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BU of 4csc by Molmil
STRUCTURE OF TERNARY COMPLEXES OF CITRATE SYNTHASE WITH D-AND L-MALATE: MECHANISTIC IMPLICATIONS
分子名称: ACETYL COENZYME *A, CITRATE SYNTHASE, D-MALATE
著者Karpusas, M, Holland, D, Remington, S.J.
登録日1990-05-07
公開日1991-04-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献1.9-A structures of ternary complexes of citrate synthase with D- and L-malate: mechanistic implications.
Biochemistry, 30, 1991
4YLI
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BU of 4yli by Molmil
CL-K1 trimer
分子名称: CALCIUM ION, CHLORIDE ION, Collectin-11, ...
著者Wallis, R, Girija, U.V, Gingras, A.R, Moody, P.C.E, Marshall, J.E.
登録日2015-03-05
公開日2015-04-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome.
Bmc Biol., 13, 2015
4YMD
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BU of 4ymd by Molmil
CL-K1 trimer bound to man(alpha1-2)man
分子名称: CALCIUM ION, Collectin-11, GLYCEROL, ...
著者Wallis, R, Venkatraman Girija, U, Gingras, A.R, Moody, P.C.E, Marshall, J.E.
登録日2015-03-06
公開日2015-04-08
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome.
Bmc Biol., 13, 2015
5ZHX
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BU of 5zhx by Molmil
Crystal structure of SmgGDS-558 and farnesylated RhoA complex
分子名称: FARNESYL, Rap1 GTPase-GDP dissociation stimulator 1, Transforming protein RhoA
著者Shimizu, H, Toma-Fukai, S, Shimizu, T.
登録日2018-03-13
公開日2018-09-05
最終更新日2018-10-03
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献GEF mechanism revealed by the structure of SmgGDS-558 and farnesylated RhoA complex and its implication for a chaperone mechanism.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6M2I
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BU of 6m2i by Molmil
Structure of the 2-Aminoisobutyric acid Monooxygenase Hydroxylase
分子名称: 1,2-ETHANEDIOL, Amidohydrolase, FE (III) ION, ...
著者Hibi, M, Mikami, B, Ogawa, J.
登録日2020-02-27
公開日2021-01-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes.
Commun Biol, 4, 2021
6M1W
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BU of 6m1w by Molmil
Structure of the 2-Aminoisobutyric acid Monooxygenase Hydroxylase
分子名称: Amidohydrolase, CHLORIDE ION, FE (III) ION, ...
著者Hibi, M, Mikami, B, Ogawa, J.
登録日2020-02-26
公開日2021-01-06
最終更新日2021-01-27
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献A three-component monooxygenase from Rhodococcus wratislaviensis may expand industrial applications of bacterial enzymes.
Commun Biol, 4, 2021
1AV4
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BU of 1av4 by Molmil
CRYSTAL STRUCTURES OF THE COPPER-CONTAINING AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS IN THE HOLO-AND APO-FORMS: IMPLICATIONS FOR THE BIOGENESIS OF TOPA QUINONE
分子名称: AMINE OXIDASE, COPPER (II) ION
著者Wilce, M.C.J, Guss, J.M, Freeman, H.C.
登録日1997-09-24
公開日1998-03-25
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of the copper-containing amine oxidase from Arthrobacter globiformis in the holo and apo forms: implications for the biogenesis of topaquinone.
Biochemistry, 36, 1997
1AVL
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BU of 1avl by Molmil
CRYSTAL STRUCTURES OF THE COPPER-CONTAINING AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS IN THE HOLO-AND APO-FORMS: IMPLICATIONS FOR THE BIOGENESIS OF TOPA QUINONE
分子名称: AMINE OXIDASE, COPPER (II) ION
著者Wilce, M.C.J, Guss, J.M, Freeman, H.C.
登録日1997-09-17
公開日1998-03-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structures of the copper-containing amine oxidase from Arthrobacter globiformis in the holo and apo forms: implications for the biogenesis of topaquinone.
Biochemistry, 36, 1997
1GSH
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BU of 1gsh by Molmil
STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5
分子名称: GLUTATHIONE BIOSYNTHETIC LIGASE
著者Matsuda, K, Kato, H, Yamaguchi, H, Nishioka, T, Katsube, Y, Oda, J.
登録日1995-05-16
公開日1996-07-11
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of glutathione synthetase at optimal pH: domain architecture and structural similarity with other proteins.
Protein Eng., 9, 1996
2FLF
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BU of 2flf by Molmil
Crystal structure of l-fuculose-1-phosphate aldolase from Thermus Thermophilus HB8
分子名称: fuculose-1-phosphate aldolase
著者Jeyakanthan, J, Yokoyama, S, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-01-06
公開日2007-01-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Purification, crystallization and preliminary X-ray crystallographic study of the L-fuculose-1-phosphate aldolase (FucA) from Thermus thermophilus HB8
Acta Crystallogr.,Sect.F, 61, 2005

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