Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6TMF
DownloadVisualize
BU of 6tmf by Molmil
Structure of an archaeal ABCE1-bound ribosomal post-splitting complex
分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
著者Kratzat, H, Becker, T, Tampe, R, Beckmann, R.
登録日2019-12-04
公開日2020-02-12
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Molecular analysis of the ribosome recycling factor ABCE1 bound to the 30S post-splitting complex.
Embo J., 39, 2020
5AGV
DownloadVisualize
BU of 5agv by Molmil
The sliding clamp of Mycobacterium tuberculosis in complex with a natural product.
分子名称: (R,R)-2,3-BUTANEDIOL, CALCIUM ION, CYCLOHEXYL GRISELIMYCIN, ...
著者Lukat, P, Kling, A, Heinz, D.W, Mueller, R.
登録日2015-02-03
公開日2015-06-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Antibiotics. Targeting Dnan for Tuberculosis Therapy Using Novel Griselimycins.
Science, 348, 2015
4NBE
DownloadVisualize
BU of 4nbe by Molmil
Fluorene-bound oxygenase with Phe275 replaced by Trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)
分子名称: 9H-fluorene, FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Ashikawa, Y, Usami, Y, Inoue, K, Nojiri, H.
登録日2013-10-23
公開日2014-03-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.
Appl.Environ.Microbiol., 80, 2014
4NB8
DownloadVisualize
BU of 4nb8 by Molmil
Oxygenase with Ile262 replaced by Leu and ferredoxin complex of carbazole 1,9a-dioxygenase
分子名称: FE (II) ION, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin CarAc, ...
著者Ashikawa, Y, Usami, Y, Inoue, K, Nojiri, H.
登録日2013-10-23
公開日2014-03-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase.
Appl.Environ.Microbiol., 80, 2014
6ZRD
DownloadVisualize
BU of 6zrd by Molmil
STRUCTURE OF THE HUMAN RBAP48 in complex with a macrocyclic peptide cyclized via a xylene linker attached to two cysteines
分子名称: 1,3,5-trimethylbenzene, Histone-binding protein RBBP4, macrocyclic peptide based on residues 659-672 of the metastasis-associated protein MTA1
著者Vetter, I.R, Porfetye, A.T.
登録日2020-07-13
公開日2020-12-02
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure Based Design of Bicyclic Peptide Inhibitors of RbAp48.
Angew.Chem.Int.Ed.Engl., 60, 2021
8R7M
DownloadVisualize
BU of 8r7m by Molmil
CTX-M14 in complex with boric acid and 1,2-diol boric ester
分子名称: BORIC ACID, Beta-lactamase, GLYCEROL, ...
著者Werner, N, Prester, A, Hinrichs, W, Perbandt, M, Betzel, C.
登録日2023-11-26
公開日2024-01-17
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Time-resolved crystallography of boric acid binding to the active site serine of the beta-lactamase CTX-M-14 and subsequent 1,2-diol esterification.
Commun Chem, 7, 2024
7RBY
DownloadVisualize
BU of 7rby by Molmil
Crystal structure of Nanobody nb112 and SARS-CoV-2 RBD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ilama-isolated nanobody NIH-CoV nb-112 specific to SARS-CoV-2 RBD, MAGNESIUM ION, ...
著者Chen, Y, Tolbert, W, Pazgier, M.
登録日2021-07-06
公開日2022-03-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Nebulized delivery of a broadly neutralizing SARS-CoV-2 RBD-specific nanobody prevents clinical, virological, and pathological disease in a Syrian hamster model of COVID-19.
Mabs, 14
3G3T
DownloadVisualize
BU of 3g3t by Molmil
Crystal structure of a eukaryotic polyphosphate polymerase in complex with orthophosphate
分子名称: 1,2-ETHANEDIOL, PHOSPHATE ION, Vacuolar transporter chaperone 4
著者Lenherr, E.D, Hothorn, M, Scheffzek, K.
登録日2009-02-02
公開日2009-05-05
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Catalytic core of a membrane-associated eukaryotic polyphosphate polymerase.
Science, 324, 2009
3G3R
DownloadVisualize
BU of 3g3r by Molmil
Crystal structure of a eukaryotic polyphosphate polymerase in complex with AppNHp-Mn2+
分子名称: MANGANESE (II) ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SODIUM ION, ...
著者Hothorn, M.
登録日2009-02-02
公開日2009-05-05
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Catalytic core of a membrane-associated eukaryotic polyphosphate polymerase.
Science, 324, 2009
6TVG
DownloadVisualize
BU of 6tvg by Molmil
Human CD73 (ecto 5'-nucleotidase) in complex with AMPCP in the open state
分子名称: 5'-nucleotidase, ecto (CD73), isoform CRA_a, ...
著者Scaletti, E, Strater, N.
登録日2020-01-09
公開日2020-02-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献2-Substituted alpha , beta-Methylene-ADP Derivatives: Potent Competitive Ecto-5'-nucleotidase (CD73) Inhibitors with Variable Binding Modes.
J.Med.Chem., 63, 2020
3G3Q
DownloadVisualize
BU of 3g3q by Molmil
Crystal structure of a eukaryotic polyphosphate polymerase in complex with a phosphate polymer
分子名称: PHOSPHATE ION, SULFATE ION, Vacuolar transporter chaperone 4
著者Hothorn, M, Scheffzek, K.
登録日2009-02-02
公開日2009-05-05
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Catalytic core of a membrane-associated eukaryotic polyphosphate polymerase.
Science, 324, 2009
6L7S
DownloadVisualize
BU of 6l7s by Molmil
Crystal structure of FKRP in complex with Mg ion, Zinc peak data
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fukutin-related protein, MAGNESIUM ION, ...
著者Kuwabara, N.
登録日2019-11-03
公開日2020-01-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy.
Nat Commun, 11, 2020
2DXS
DownloadVisualize
BU of 2dxs by Molmil
Crystal structure of HCV NS5B RNA polymerase complexed with a tetracyclic inhibitor
分子名称: Genome polyprotein, N-[(13-CYCLOHEXYL-6,7-DIHYDROINDOLO[1,2-D][1,4]BENZOXAZEPIN-10-YL)CARBONYL]-2-METHYL-L-ALANINE
著者Adachi, T, Tsuruha, J, Doi, S, Murase, K, Ikegashira, K, Watanabe, S, Uehara, K, Orita, T, Nomura, A, Kamada, M.
登録日2006-08-30
公開日2006-12-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Discovery of Conformationally Constrained Tetracyclic Compounds as Potent Hepatitis C Virus NS5B RNA Polymerase Inhibitors
J.Med.Chem., 49, 2006
8BVB
DownloadVisualize
BU of 8bvb by Molmil
Crystal structure of the apo form of SmbA loop deletion mutant.
分子名称: Aldo_ket_red domain-containing protein
著者Dubey, B.N, Schirmer, T.
登録日2022-12-02
公開日2023-01-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Mutant structure of metabolic switch protein in complex with monomeric c-di-GMP reveals a potential mechanism of protein-mediated ligand dimerization.
Sci Rep, 13, 2023
1AYF
DownloadVisualize
BU of 1ayf by Molmil
BOVINE ADRENODOXIN (OXIDIZED)
分子名称: ADRENODOXIN, FE2/S2 (INORGANIC) CLUSTER, GLYCEROL
著者Mueller, A, Mueller, J.J, Heinemann, U.
登録日1997-11-03
公開日1998-12-30
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献New aspects of electron transfer revealed by the crystal structure of a truncated bovine adrenodoxin, Adx(4-108).
Structure, 6, 1998
8QZD
DownloadVisualize
BU of 8qzd by Molmil
Soluble epoxide hydrolase in complex with Epoxykinin
分子名称: 1,2-ETHANEDIOL, 2-[5-bromanyl-3-[2,2,2-tris(fluoranyl)ethanoyl]indol-1-yl]-N-cycloheptyl-ethanamide, BROMIDE ION, ...
著者Kumar, A, Ehrler, J.M.H, Ziegler, S, Doetsch, L, Proschak, E, Knapp, S, Structural Genomics Consortium (SGC)
登録日2023-10-27
公開日2024-02-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Discovery of the sEH Inhibitor Epoxykynin as a Potent Kynurenine Pathway Modulator.
J.Med.Chem., 67, 2024
4W9M
DownloadVisualize
BU of 4w9m by Molmil
AMPPNP bound Rad50 in complex with dsDNA
分子名称: DNA (5'-D(*GP*GP*TP*CP*GP*GP*TP*CP*AP*CP*CP*GP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*CP*GP*GP*TP*GP*AP*CP*CP*GP*AP*CP*C)-3'), Exonuclease, ...
著者Rojowska, A, Lammens, K.
登録日2014-08-27
公開日2015-01-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the Rad50 DNA double-strand break repair protein in complex with DNA.
Embo J., 33, 2014
6TR1
DownloadVisualize
BU of 6tr1 by Molmil
Native cytochrome c6 from Thermosynechococcus elongatus in space group H3
分子名称: Cytochrome c6, HEME C, SODIUM ION
著者Falke, S, Feiler, C.G, Sarrou, I.
登録日2019-12-17
公開日2019-12-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of native cytochrome c6from Thermosynechococcus elongatus in two different space groups and implications for its oligomerization.
Acta Crystallogr.,Sect.F, 76, 2020
3T5G
DownloadVisualize
BU of 3t5g by Molmil
Structure of fully modified farnesylated Rheb in complex with PDE6D
分子名称: FARNESYL, GTP-binding protein Rheb, GUANOSINE-5'-DIPHOSPHATE, ...
著者Ismail, S.A, Chen, Y.-X, Wittinghofer, A.
登録日2011-07-27
公開日2011-10-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Arl2-GTP and Arl3-GTP regulate a GDI-like transport system for farnesylated cargo.
Nat.Chem.Biol., 7, 2011
3SSU
DownloadVisualize
BU of 3ssu by Molmil
Crystal structure of vimentin coil1A/1B fragment
分子名称: Vimentin
著者Nicolet, S, Chernyatina, A.A, Strelkov, S.V.
登録日2011-07-08
公開日2012-08-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.603 Å)
主引用文献Atomic structure of the vimentin central alpha-helical domain and its implications for intermediate filament assembly.
Proc.Natl.Acad.Sci.USA, 109, 2012
3FSM
DownloadVisualize
BU of 3fsm by Molmil
CRYSTAL STRUCTURE OF A CHEMICALLY SYNTHESIZED 203 AMINO ACID 'COVALENT DIMER' [L-Ala51,D-Ala51'] HIV-1 PROTEASE MOLECULE
分子名称: COVALENT DIMER [L-Ala51, D-Ala51'] HIV-1 PROTEASE, N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide
著者Torbeev, V.Y, Kent, S.B.H.
登録日2009-01-10
公開日2010-01-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Protein conformational dynamics in the mechanism of HIV-1 protease catalysis.
Proc.Natl.Acad.Sci.USA, 108, 2011
6TSY
DownloadVisualize
BU of 6tsy by Molmil
Cytochrome c6 from Thermosynechococcus elongatus in a monoclinic space group
分子名称: Cytochrome c6, HEME C, SULFATE ION
著者Feiler, C.G, Falke, S, Sarrou, I.
登録日2019-12-21
公開日2020-01-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystal structures of native cytochrome c6from Thermosynechococcus elongatus in two different space groups and implications for its oligomerization.
Acta Crystallogr.,Sect.F, 76, 2020
4NVP
DownloadVisualize
BU of 4nvp by Molmil
Structure of the cyclic nucleotide-binding domain of HCN4 channel complexed with 7-CH-cAMP
分子名称: (2S,4aR,6R,7R,7aS)-6-(4-amino-7H-pyrrolo[2,3-d]pyrimidin-7-yl)tetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinine-2,7-diol 2-oxide, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
著者Alfieri, A, Moroni, A.
登録日2013-12-05
公開日2014-03-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Cyclic Nucleotide Mapping of Hyperpolarization-Activated Cyclic Nucleotide-Gated (HCN) Channels.
Acs Chem.Biol., 9, 2014
4NDB
DownloadVisualize
BU of 4ndb by Molmil
X-ray structure of a mutant (T61D) of calexcitin - a neuronal calcium-signalling protein
分子名称: CALCIUM ION, Calexcitin
著者Erskine, P.T, Fokas, A, Muriithi, C, Razzall, E, Bowyer, A, Findlow, I.S, Werner, J.M, Wallace, B.A, Wood, S.P, Cooper, J.B.
登録日2013-10-25
公開日2014-10-29
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray, spectroscopic and normal-mode dynamics of calexcitin: structure-function studies of a neuronal calcium-signalling protein.
Acta Crystallogr.,Sect.D, 71, 2015
7LX2
DownloadVisualize
BU of 7lx2 by Molmil
Cryo-EM structure of ConSOSL.UFO.664 (ConS) in complex with bNAb PGT122
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Env glycoprotein gp160, ...
著者Martin, G.M, Ward, A.B, Sattentau, Q.J.
登録日2021-03-03
公開日2022-03-09
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Profound structural conservation of chemically cross-linked HIV-1 envelope glycoprotein experimental vaccine antigens.
Npj Vaccines, 8, 2023

223166

件を2024-07-31に公開中

PDB statisticsPDBj update infoContact PDBjnumon