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2OAP
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BU of 2oap by Molmil
Crystal structure of the archaeal secretion ATPase GspE in complex with AMP-PNP
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Type II secretion system protein
著者Yamagata, A, Tainer, J.A.
登録日2006-12-17
公開日2007-02-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Hexameric structures of the archaeal secretion ATPase GspE and implications for a universal secretion mechanism.
Embo J., 26, 2007
3VHJ
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BU of 3vhj by Molmil
Crystal structure of the cytoplasmic domain of BfpC
分子名称: BfpC
著者Yamagata, A, Tainer, J.A, Donnenberg, M.S.
登録日2011-08-25
公開日2012-05-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of an Essential Type IV Pilus Biogenesis Protein Provides Insights into Pilus and Type II Secretion Systems
J.Mol.Biol., 419, 2012
3A36
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BU of 3a36 by Molmil
Structural insight into the membrane insertion of tail-anchored proteins by Get3
分子名称: ATPase GET3, ZINC ION
著者Yamagata, A, Mimura, H, Sato, Y, Yamashita, M, Yoshikawa, A, Fukai, S.
登録日2009-06-10
公開日2010-01-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural insight into the membrane insertion of tail-anchored proteins by Get3
Genes Cells, 15, 2010
3A37
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BU of 3a37 by Molmil
Structural insight into the membrane insertion of tail-anchored proteins by Get3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase GET3, ZINC ION
著者Yamagata, A, Mimura, H, Sato, Y, Yamashita, M, Yoshikawa, A, Fukai, S.
登録日2009-06-10
公開日2010-01-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural insight into the membrane insertion of tail-anchored proteins by Get3
Genes Cells, 15, 2010
7CEE
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BU of 7cee by Molmil
Crystal structure of mouse neuroligin-3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Neuroligin-3
著者Yamagata, A, Yoshida, T, Shiroshima, T, Maeda, A, Fukai, S.
登録日2020-06-23
公開日2021-02-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.763 Å)
主引用文献Canonical versus non-canonical transsynaptic signaling of neuroligin 3 tunes development of sociality in mice.
Nat Commun, 12, 2021
7CEG
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BU of 7ceg by Molmil
Crystal structure of the complex between mouse PTP delta and neuroligin-3
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform C of Receptor-type tyrosine-protein phosphatase delta, Neuroligin-3
著者Yamagata, A, Yoshida, T, Shiroshima, T, Maeda, A, Fukai, S.
登録日2020-06-23
公開日2021-02-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.85 Å)
主引用文献Canonical versus non-canonical transsynaptic signaling of neuroligin 3 tunes development of sociality in mice.
Nat Commun, 12, 2021
7CQF
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BU of 7cqf by Molmil
Crystal structure of PSD-95 PDZ3 fused with ADAM22 C-terminal peptide
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, CHOLINE ION, ...
著者Yamagata, A, Fukai, S.
登録日2020-08-10
公開日2021-01-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献LGI1-ADAM22-MAGUK configures transsynaptic nanoalignment for synaptic transmission and epilepsy prevention.
Proc.Natl.Acad.Sci.USA, 118, 2021
3JSV
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BU of 3jsv by Molmil
Crystal structure of mouse NEMO CoZi in complex with Lys63-linked di-ubiquitin
分子名称: NF-kappa-B essential modulator, Ubiquitin
著者Yoshikawa, A, Sato, Y, Mimura, H, Yamashita, M, Yamagata, A, Fukai, S.
登録日2009-09-11
公開日2009-10-27
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of the NEMO ubiquitin-binding domain in complex with Lys 63-linked di-ubiquitin
Febs Lett., 583, 2009
5GVE
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BU of 5gve by Molmil
Human TOP3B-TDRD3 complex
分子名称: DNA topoisomerase 3-beta-1, MAGNESIUM ION, Tudor domain-containing protein 3
著者Goto-Ito, S, Yamagata, A, Sato, Y, Takahashi, T.S, Fukai, S.
登録日2016-09-05
公開日2017-06-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.606 Å)
主引用文献Structural basis of the interaction between Topoisomerase III beta and the TDRD3 auxiliary factor
Sci Rep, 7, 2017
5H11
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BU of 5h11 by Molmil
Crystal structure of Zebrafish Sec10
分子名称: BROMIDE ION, Uncharacterized protein
著者Chen, J, Yamagata, A, Fukai, S.
登録日2016-10-07
公開日2017-02-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.732 Å)
主引用文献Crystal structure of Sec10, a subunit of the exocyst complex
Sci Rep, 7, 2017
8B64
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Cryo-EM structure of RC-LH1-PufX photosynthetic core complex from Rba. capsulatus
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
著者Bracun, L, Yamagata, A, Shirouzu, M, Liu, L.N.
登録日2022-09-26
公開日2023-02-01
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.589 Å)
主引用文献Cryo-EM structure of a monomeric RC-LH1-PufX supercomplex with high-carotenoid content from Rhodobacter capsulatus.
Structure, 31, 2023
4WU7
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BU of 4wu7 by Molmil
HLA-A24 in complex with HIV-1 Nef134-8(2F)
分子名称: 8-Mer peptide from Protein Nef, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
著者Shimizu, A, Yamagata, A, Fukai, S, Iwamoto, A.
登録日2014-10-31
公開日2015-05-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.297 Å)
主引用文献Crystal structure of Nef134-8 epitope presented by HLA-A24
To Be Published
4WU5
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BU of 4wu5 by Molmil
HLA-A24 in complex with HIV-1 Nef134-8(wt)
分子名称: 8-Mer peptide from Protein Nef, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
著者Shimizu, A, Yamagata, A, Fukai, S, Iwamoto, A.
登録日2014-10-31
公開日2015-05-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of Nef134-8(wt) epitope presented by HLA-A24
To Be Published
7DDQ
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BU of 7ddq by Molmil
Structure of RC-LH1-PufX from Rhodobacter veldkampii
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Antenna pigment protein alpha chain, Antenna pigment protein beta chain, ...
著者Bracun, L, Yamagata, A, Shirouzu, M, Liu, L.N.
登録日2020-10-29
公開日2021-06-30
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.84 Å)
主引用文献Cryo-EM structure of the photosynthetic RC-LH1-PufX supercomplex at 2.8-angstrom resolution.
Sci Adv, 7, 2021
6KIP
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BU of 6kip by Molmil
Crystal structure of PTPRD phosphatase domain in complex with Liprin-alpha3 tandem SAM domains
分子名称: Liprin-alpha-3, Receptor-type tyrosine-protein phosphatase delta
著者Wakita, M, Yamagata, A, Fukai, S.
登録日2019-07-19
公開日2020-02-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.911 Å)
主引用文献Structural insights into selective interaction between type IIa receptor protein tyrosine phosphatases and Liprin-alpha.
Nat Commun, 11, 2020
5XWU
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BU of 5xwu by Molmil
Crystal structure of PTPdelta Ig1-Ig3 in complex with SALM2 LRR-Ig
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S.
登録日2017-06-30
公開日2018-06-06
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (3.162 Å)
主引用文献Structural basis of trans-synaptic interactions between PTP delta and SALMs for inducing synapse formation.
Nat Commun, 9, 2018
5XWS
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Crystal structure of SALM5 LRR-Ig
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat and fibronectin type-III domain-containing protein 5
著者Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S.
登録日2017-06-30
公開日2018-06-06
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (3.084 Å)
主引用文献Structural basis of trans-synaptic interactions between PTP delta and SALMs for inducing synapse formation.
Nat Commun, 9, 2018
5XWT
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BU of 5xwt by Molmil
Crystal structure of PTPdelta Ig1-Fn1 in complex with SALM5 LRR-Ig
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Goto-Ito, S, Yamagata, A, Sato, Y, Fukai, S.
登録日2017-06-30
公開日2018-06-06
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (4.178 Å)
主引用文献Structural basis of trans-synaptic interactions between PTP delta and SALMs for inducing synapse formation.
Nat Commun, 9, 2018
5GVC
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BU of 5gvc by Molmil
Human Topoisomerase IIIb topo domain
分子名称: DNA topoisomerase 3-beta-1, MAGNESIUM ION
著者Goto-Ito, S, Yamagata, A, Sato, Y, Takahashi, T.S, Fukai, S.
登録日2016-09-05
公開日2017-06-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.436 Å)
主引用文献Structural basis of the interaction between Topoisomerase III beta and the TDRD3 auxiliary factor
Sci Rep, 7, 2017
5GVD
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BU of 5gvd by Molmil
Human TDRD3 DUF1767-OB domains
分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, PHOSPHATE ION, ...
著者Goto-Ito, S, Yamagata, A, Sato, Y, Takahashi, T.S, Fukai, S.
登録日2016-09-05
公開日2017-06-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.623 Å)
主引用文献Structural basis of the interaction between Topoisomerase III beta and the TDRD3 auxiliary factor
Sci Rep, 7, 2017
3W0W
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BU of 3w0w by Molmil
The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide in space group P212121
分子名称: 10-mer peptide from Protein Nef, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
著者Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A.
登録日2012-11-05
公開日2013-11-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.603 Å)
主引用文献Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXS
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BU of 3vxs by Molmil
The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(6L) peptide
分子名称: 10-mer peptide from Protein Nef, Beta-2-microglobulin, H27-14 TCR alpha chain, ...
著者Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A.
登録日2012-09-20
公開日2013-10-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXP
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HLA-A24 in complex with HIV-1 Nef134-10(6L)
分子名称: 10-mer peptide from Protein Nef, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
著者Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A.
登録日2012-09-20
公開日2013-10-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXR
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The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(wt) peptide
分子名称: 10-mer peptide from Protein Nef, Beta-2-microglobulin, H27-14 TCR alpha chain, ...
著者Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A.
登録日2012-09-20
公開日2013-10-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013
3VXT
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T36-5 TCR specific for HLA-A24-Nef134-10
分子名称: T36-5 TCR alpha chain, T36-5 TCR beta chain
著者Shimizu, A, Fukai, S, Yamagata, A, Iwamoto, A.
登録日2012-09-20
公開日2013-10-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection
SCI REP, 3, 2013

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