Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7MJA
DownloadVisualize
BU of 7mja by Molmil
HLA-A*24:02 bound to Neuroblastoma derived PHOX2B peptide
分子名称: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
著者Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
登録日2021-04-19
公開日2021-08-18
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
7MJ8
DownloadVisualize
BU of 7mj8 by Molmil
HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
分子名称: Beta-2-microglobulin, GLYCEROL, Insulin-like growth factor-binding protein-like 1 peptide, ...
著者Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
登録日2021-04-19
公開日2021-08-18
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
6MPP
DownloadVisualize
BU of 6mpp by Molmil
HLA-A*01:01 complex with NRAS Q61K peptide by NMR
分子名称: Beta-2-microglobulin, HLA class I histocompatibility antigen, A-1 alpha chain, ...
著者Flores-Solis, D, McShan, A.C, Sgourakis, N.G.
登録日2018-10-08
公開日2019-10-16
最終更新日2024-10-23
実験手法SOLUTION NMR
主引用文献MHC-I complex determined by NMR
To Be Published
6NPR
DownloadVisualize
BU of 6npr by Molmil
Crystal structure of H-2Dd with C84-C139 disulfide in complex with gp120 derived peptide P18-I10
分子名称: ARG-GLY-PRO-GLY-ARG-ALA-PHE-VAL-THR-ILE, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
著者Toor, J, McShan, A.C, Tripathi, S.M, Sgourakis, N.G.
登録日2019-01-18
公開日2020-01-22
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Molecular determinants of chaperone interactions on MHC-I for folding and antigen repertoire selection.
Proc.Natl.Acad.Sci.USA, 116, 2019
6NAN
DownloadVisualize
BU of 6nan by Molmil
NMR structure determination of Ixolaris and Factor X interaction reveals a noncanonical mechanism of Kunitz inhibition
分子名称: Ixolaris
著者De Paula, V.S, Sgourakis, N.G, Francischetti, I.M.B, Almeida, F.C.L, Monteiro, R.Q, Valente, A.P.
登録日2018-12-06
公開日2019-06-12
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献NMR structure determination of Ixolaris and factor X(a) interaction reveals a noncanonical mechanism of Kunitz inhibition.
Blood, 134, 2019
7RNO
DownloadVisualize
BU of 7rno by Molmil
Model of the Ac-6-FP/hpMR1/bB2m/TAPBPR complex from integrated docking, NMR and restrained MD
分子名称: Beta-2-microglobulin, Major histocompatibility complex class I-related gene protein, N-(6-formyl-4-oxo-3,4-dihydropteridin-2-yl)acetamide, ...
著者McShan, A.C, Sgourakis, N.G.
登録日2021-07-29
公開日2022-05-11
最終更新日2022-08-10
実験手法SOLUTION NMR
主引用文献TAPBPR employs a ligand-independent docking mechanism to chaperone MR1 molecules.
Nat.Chem.Biol., 18, 2022
2MJZ
DownloadVisualize
BU of 2mjz by Molmil
Capsid model of M13 bacteriophage virus from Magic-angle spinning NMR and Rosetta modeling
分子名称: Capsid protein G8P
著者Morag, O, Sgourakis, N.G, Baker, D, Goldbourt, A.
登録日2014-01-22
公開日2015-01-07
最終更新日2024-05-01
実験手法SOLID-STATE NMR
主引用文献The NMR-Rosetta capsid model of M13 bacteriophage reveals a quadrupled hydrophobic packing epitope.
Proc.Natl.Acad.Sci.USA, 112, 2015
2M89
DownloadVisualize
BU of 2m89 by Molmil
Solution structure of the Aha1 dimer from Colwellia psychrerythraea
分子名称: Aha1 domain protein
著者Rossi, P, Sgourakis, N.G, Shi, L, Liu, G, Barbieri, C.M, Lee, H, Grant, T.D, Luft, J.R, Xiao, R, Acton, T.B, Montelione, G.T, Snell, E.H, Baker, D, Lange, O.A, Northeast Structural Genomics Consortium (NESG)
登録日2013-05-09
公開日2013-09-04
最終更新日2024-05-01
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta.
Proteins, 83, 2015
2LPZ
DownloadVisualize
BU of 2lpz by Molmil
Atomic model of the Type-III Secretion System Needle
分子名称: Protein prgI
著者Loquet, A, Sgourakis, N.G, Gupta, R, Giller, K, Riedel, D, Goosmann, C, Griesinger, C, Kolbe, M.G, Baker, D, Becker, S, Lange, A.
登録日2012-02-21
公開日2012-05-16
最終更新日2024-05-15
実験手法SOLID-STATE NMR
主引用文献Atomic model of the type III secretion system needle.
Nature, 486, 2012
2MME
DownloadVisualize
BU of 2mme by Molmil
Hybrid structure of the Shigella flexneri MxiH Type three secretion system needle
分子名称: MxiH
著者Demers, J.P, Habenstein, B, Loquet, A, Vasa, S.K, Becker, S, Baker, D, Lange, A, Sgourakis, N.G.
登録日2014-03-14
公開日2014-10-08
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (7.7 Å), SOLID-STATE NMR
主引用文献High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy.
Nat Commun, 5, 2014
2MV0
DownloadVisualize
BU of 2mv0 by Molmil
Solution NMR Structure of Maltose-binding protein from Escherichia coli, Northeast Structural Genomics Consortium (NESG) Target ER690
分子名称: Maltose-binding periplasmic protein
著者Rossi, P, Lange, O.F, Sgourakis, N.G, Song, Y, Lee, H, Aramini, J.M, Ertekin, A, Xiao, R, Acton, T.B, Baker, D, Montelione, G.T, Northeast Structural Genomics Consortium (NESG)
登録日2014-09-18
公開日2014-12-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.
Proc.Natl.Acad.Sci.USA, 109, 2012
6B9K
DownloadVisualize
BU of 6b9k by Molmil
Solution NMR Structure of Unbound P18-I10
分子名称: ARG-GLY-PRO-GLY-ARG-ALA-PHE-VAL-THR-ILE
著者Flores-Solis, D, McShan, A, Sgourakis, N.
登録日2017-10-10
公開日2018-07-25
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Peptide exchange on MHC-I by TAPBPR is driven by a negative allostery release cycle.
Nat. Chem. Biol., 14, 2018
4W4M
DownloadVisualize
BU of 4w4m by Molmil
Crystal structure of PrgK 19-92
分子名称: Lipoprotein PrgK
著者Bergeron, J.R.C, Strynadka, N.C.J.
登録日2014-08-15
公開日2014-10-29
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body.
Structure, 23, 2015
4OYC
DownloadVisualize
BU of 4oyc by Molmil
Crystal structure of the PrgK periplasmic domain 2
分子名称: Lipoprotein PrgK
著者Bergeron, J.R.C, Strynadka, N.C.J.
登録日2014-02-11
公開日2014-12-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body.
Structure, 23, 2015
6E5C
DownloadVisualize
BU of 6e5c by Molmil
Solution NMR structure of a de novo designed double-stranded beta-helix
分子名称: De novo beta protein
著者Marcos, E, Chidyausiku, T.M, McShan, A, Evangelidis, T, Nerli, S, Sgourakis, N, Tripsianes, K, Baker, D.
登録日2018-07-19
公開日2018-11-07
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献De novo design of a non-local beta-sheet protein with high stability and accuracy.
Nat. Struct. Mol. Biol., 25, 2018
5IVX
DownloadVisualize
BU of 5ivx by Molmil
Crystal Structure of B4.2.3 T-Cell Receptor and H2-Dd P18-I10 Complex
分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
著者Natarajan, K, Jiang, J, Margulies, D.
登録日2016-03-21
公開日2017-03-29
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献An allosteric site in the T-cell receptor C beta domain plays a critical signalling role.
Nat Commun, 8, 2017
5IW1
DownloadVisualize
BU of 5iw1 by Molmil
Crystal Structure of B4.2.3 T-Cell Receptor
分子名称: T-CELL RECEPTOR ALPHA CHAIN, T-CELL RECEPTOR BETA CHAIN
著者Natarajan, K, Jiang, J, Margulies, D.
登録日2016-03-21
公開日2017-03-29
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.001 Å)
主引用文献An allosteric site in the T-cell receptor C beta domain plays a critical signalling role.
Nat Commun, 8, 2017
3J6D
DownloadVisualize
BU of 3j6d by Molmil
Model of the PrgH-PrgK periplasmic rings
分子名称: Pathogenicity 1 island effector protein, Protein PrgH
著者Bergeron, J.R.C, Strynadka, N.C.J.
登録日2014-02-14
公開日2015-01-14
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (11.7 Å)
主引用文献The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body.
Structure, 23, 2015
4G1I
DownloadVisualize
BU of 4g1i by Molmil
Structure of the PrgH periplasmic domain
分子名称: PENTAETHYLENE GLYCOL, PHOSPHATE ION, Protein prgH
著者Bergeron, J.R.C, Worrall, L.J, Strynadka, N.C.J.
登録日2012-07-10
公開日2013-05-08
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
4G08
DownloadVisualize
BU of 4g08 by Molmil
Crystal structure of the periplasmic domain of InvG
分子名称: Protein InvG
著者Bergeron, J.R.C, Strynadka, N.C.J.
登録日2012-07-09
公開日2013-05-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
4G2S
DownloadVisualize
BU of 4g2s by Molmil
Crystal structure of a Salmonella type III secretion system protein
分子名称: CALCIUM ION, Protein prgH
著者Worrall, L.J, Vuckovic, M, Strynadka, N.C.J.
登録日2012-07-12
公開日2013-05-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.858 Å)
主引用文献A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
6O0I
DownloadVisualize
BU of 6o0i by Molmil
NMR ensemble of computationally designed protein XAA
分子名称: Design construct XAA
著者Wei, K.Y, Moschidi, D, Nerli, S, Sgourakis, N, Baker, D.
登録日2019-02-16
公開日2020-04-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6O0C
DownloadVisualize
BU of 6o0c by Molmil
NMR ensemble of computationally designed protein XAA_GVDQ mutant M4L
分子名称: Design construct XAA_GVDQ mutant M4L
著者Wei, K.Y, Moschidi, D, Nerli, S, Sgourakis, N, Baker, D.
登録日2019-02-15
公開日2020-04-22
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Computational design of closely related proteins that adopt two well-defined but structurally divergent folds.
Proc.Natl.Acad.Sci.USA, 117, 2020
6DMA
DownloadVisualize
BU of 6dma by Molmil
DHD15_closed
分子名称: DHD15_closed_A, DHD15_closed_B
著者Bick, M.J, Chen, Z, Baker, D.
登録日2018-06-04
公開日2018-12-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.363 Å)
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
6DLM
DownloadVisualize
BU of 6dlm by Molmil
DHD127
分子名称: DHD127_A, DHD127_B
著者Bick, M.J, Chen, Z, Baker, D.
登録日2018-06-01
公開日2018-12-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.753 Å)
主引用文献Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon