Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2C99
DownloadVisualize
BU of 2c99 by Molmil
Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF
分子名称: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, PSP OPERON TRANSCRIPTIONAL ACTIVATOR
著者Rappas, M, Schumacher, J, Niwa, H, Buck, M, Zhang, X.
登録日2005-12-09
公開日2006-02-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural Basis of the Nucleotide Driven Conformational Changes in the Aaa(+) Domain of Transcription Activator Pspf.
J.Mol.Biol., 357, 2006
2C96
DownloadVisualize
BU of 2c96 by Molmil
Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF
分子名称: ADENOSINE-5'-TRIPHOSPHATE, PSP OPERON TRANSCRIPTIONAL ACTIVATOR
著者Rappas, M, Schumacher, J, Niwa, H, Buck, M, Zhang, X.
登録日2005-12-09
公開日2006-02-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Basis of the Nucleotide Driven Conformational Changes in the Aaa(+) Domain of Transcription Activator Pspf.
J.Mol.Biol., 357, 2006
3HEI
DownloadVisualize
BU of 3hei by Molmil
Ligand Recognition by A-Class Eph Receptors: Crystal Structures of the EphA2 Ligand-Binding Domain and the EphA2/ephrin-A1 Complex
分子名称: Ephrin type-A receptor 2, Ephrin-A1
著者Himanen, J.P, Goldgur, Y, Miao, H, Myshkin, E, Guo, H, Buck, M, Nguyen, M, Rajashankar, K.R, Wang, B, Nikolov, D.B.
登録日2009-05-08
公開日2009-06-30
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex.
Embo Rep., 10, 2009
3HPN
DownloadVisualize
BU of 3hpn by Molmil
Ligand recognition by A-class EPH receptors: crystal structures of the EPHA2 ligand-binding domain and the EPHA2/EPHRIN-A1 complex
分子名称: Ephrin type-A receptor 2
著者Himanen, J.P, Goldgur, Y, Miao, H, Myshkin, E, Guo, H, Buck, M, Nguyen, M, Rajashankar, K.R, Wang, B, Nikolov, D.B.
登録日2009-06-04
公開日2009-06-30
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex.
Embo Rep., 10, 2009
3H6N
DownloadVisualize
BU of 3h6n by Molmil
Crystal Structure of the ubiquitin-like domain of plexin D1
分子名称: ARSENIC, Plexin-D1, UNKNOWN ATOM OR ION
著者Tong, Y, Nedyalkova, L, Tempel, W, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Buck, M, Park, H, Structural Genomics Consortium (SGC)
登録日2009-04-23
公開日2009-05-19
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.004 Å)
主引用文献Crystal Structure of the ubiquitin-like domain of plexin D1
To be Published
3KUZ
DownloadVisualize
BU of 3kuz by Molmil
Crystal structure of the ubiquitin like domain of PLXNC1
分子名称: Plexin-C1, UNKNOWN ATOM OR ION
著者Wang, H, Li, B, Tempel, W, Tong, Y, Guan, X, Zhong, N, Crombet, L, MacKenzie, F, Buck, M, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
登録日2009-11-28
公開日2009-12-08
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the ubiquitin like domain of PLXNC1
to be published
6R9B
DownloadVisualize
BU of 6r9b by Molmil
Cryo-EM structure of bacterial RNAP with a DNA mimic protein Ocr from T7 phage
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Ye, F.Z, Zhang, X.D.
登録日2019-04-03
公開日2020-02-26
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7.
Elife, 9, 2020
6R9G
DownloadVisualize
BU of 6r9g by Molmil
Structural basis of transcription inhibition by the DNA mimic Ocr protein of bacteriophage T7
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Ye, F.Z, Zhang, X.D.
登録日2019-04-03
公開日2020-02-26
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of transcription inhibition by the DNA mimic protein Ocr of bacteriophage T7.
Elife, 9, 2020
8RE4
DownloadVisualize
BU of 8re4 by Molmil
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 5nt pre-translocated complex
分子名称: DNA (47-MER), DNA (50-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Gao, F, Zhang, X.
登録日2023-12-10
公開日2024-01-17
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
Proc.Natl.Acad.Sci.USA, 121, 2024
8RED
DownloadVisualize
BU of 8red by Molmil
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 8nt complex
分子名称: DNA (46-MER), DNA (51-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Gao, F, Zhang, X.
登録日2023-12-10
公開日2024-01-17
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
Proc.Natl.Acad.Sci.USA, 121, 2024
8REB
DownloadVisualize
BU of 8reb by Molmil
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 6nt complex
分子名称: DNA (43-MER), DNA (52-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Gao, F, Zhang, X.
登録日2023-12-10
公開日2024-01-17
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
Proc.Natl.Acad.Sci.USA, 121, 2024
8REE
DownloadVisualize
BU of 8ree by Molmil
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 9nt complex
分子名称: DNA (45-MER), DNA (49-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Gao, F, Zhang, X.
登録日2023-12-10
公開日2024-01-17
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
Proc.Natl.Acad.Sci.USA, 121, 2024
8REA
DownloadVisualize
BU of 8rea by Molmil
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 5nt post-translocated complex
分子名称: DNA (44-MER), DNA (51-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Gao, F, Zhang, X.
登録日2023-12-10
公開日2024-01-17
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
Proc.Natl.Acad.Sci.USA, 121, 2024
8REC
DownloadVisualize
BU of 8rec by Molmil
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 7nt complex
分子名称: DNA (46-MER), DNA (51-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Gao, F, Zhang, X.
登録日2023-12-10
公開日2024-01-17
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
Proc.Natl.Acad.Sci.USA, 121, 2024
5UI8
DownloadVisualize
BU of 5ui8 by Molmil
structure of sigmaN-holoenzyme
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Darst, S.A, Campbell, E.A.
登録日2017-01-13
公開日2017-02-22
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.76 Å)
主引用文献Crystal structure of Aquifex aeolicus sigma (N) bound to promoter DNA and the structure of sigma (N)-holoenzyme.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
9Q95
DownloadVisualize
BU of 9q95 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -10 to -1
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA (32-MER), ...
著者Gao, F, Zhang, X.
登録日2025-02-26
公開日2025-03-26
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (6.8 Å)
主引用文献Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q97
DownloadVisualize
BU of 9q97 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 2
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA-directed RNA polymerase subunit alpha, ...
著者Gao, F, Zhang, X.
登録日2025-02-26
公開日2025-03-26
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q91
DownloadVisualize
BU of 9q91 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 6
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Gao, F, Zhang, X.
登録日2025-02-26
公開日2025-04-02
最終更新日2025-05-07
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q96
DownloadVisualize
BU of 9q96 by Molmil
Cryo-EM Structure of Bacterial RNA polymerase-sigma54 transcription open complex with wild type sigma54, from RPi(-10-1)
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Gao, F, Zhang, X.
登録日2025-02-26
公開日2025-03-12
最終更新日2025-05-07
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q98
DownloadVisualize
BU of 9q98 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 1
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA Non-template strand (34-MER), ...
著者Gao, F, Zhang, X.
登録日2025-02-26
公開日2025-03-26
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (8.3 Å)
主引用文献Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q93
DownloadVisualize
BU of 9q93 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 4
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA-directed RNA polymerase subunit alpha, ...
著者Gao, F, Zhang, X.
登録日2025-02-26
公開日2025-04-02
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
9Q94
DownloadVisualize
BU of 9q94 by Molmil
CryoEM structure of bacterial transcription intermediate complex mediated by activator PspF containing nifH promoter DNA containing mismatch from -11 to -8 - conformation 3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, DNA (34-MER), ...
著者Gao, F, Zhang, X.
登録日2025-02-26
公開日2025-04-09
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (5.8 Å)
主引用文献Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.
Proc.Natl.Acad.Sci.USA, 122, 2025
7BEG
DownloadVisualize
BU of 7beg by Molmil
Structures of class I bacterial transcription complexes
分子名称: Class I pacrA promoter non-template DNA, Class I pacrA promoter template DNA, DNA-directed RNA polymerase subunit alpha, ...
著者Ye, F.Z, Hao, M, Zhang, X.D.
登録日2020-12-23
公開日2021-12-01
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structures of Class I and Class II Transcription Complexes Reveal the Molecular Basis of RamA-Dependent Transcription Activation.
Adv Sci, 9, 2022
7BEF
DownloadVisualize
BU of 7bef by Molmil
Structures of class II bacterial transcription complexes
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Hao, M, Ye, F.Z, Zhang, X.D.
登録日2020-12-23
公開日2021-12-01
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Structures of Class I and Class II Transcription Complexes Reveal the Molecular Basis of RamA-Dependent Transcription Activation.
Adv Sci, 9, 2022
2R2O
DownloadVisualize
BU of 2r2o by Molmil
Crystal structure of the effector domain of human Plexin B1
分子名称: Plexin-B1, UNKNOWN ATOM OR ION
著者Tong, Y, Tempel, W, Shen, L, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
登録日2007-08-27
公開日2007-09-04
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Binding of Rac1, Rnd1, and RhoD to a novel Rho GTPase interaction motif destabilizes dimerization of the plexin-B1 effector domain.
J.Biol.Chem., 282, 2007

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon