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4GPG
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BU of 4gpg by Molmil
X/N joint refinement of Achromobacter Lyticus Protease I free form at pD8.0
分子名称: Protease 1
著者Ohnishi, Y, Yamada, T, Kurihara, K, Tanaka, I, Sakiyama, F, Masaki, T, Niimura, N.
登録日2012-08-21
公開日2013-09-11
最終更新日2023-11-08
実験手法NEUTRON DIFFRACTION (1.895 Å), X-RAY DIFFRACTION
主引用文献Neutron and X-ray crystallographic analysis of Achromobacter protease I at pD 8.0: protonation states and hydration structure in the free-form.
Biochim.Biophys.Acta, 1834, 2013
5CWZ
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BU of 5cwz by Molmil
Crystal structure of the kinase domain of human TRAF2 and NCK-interacting protein kinase
分子名称: TRAF2 and NCK-interacting protein kinase
著者Ohbayashi, N, Kukimoto-Niino, M, Yamada, T, Shirouzu, M.
登録日2015-07-28
公開日2016-07-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献TNIK inhibition abrogates colorectal cancer stemness
Nat Commun, 7, 2016
5D7A
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BU of 5d7a by Molmil
Crystal structure of the kinase domain of TRAF2 and NCK-interacting protein kinase with NCB-0846
分子名称: SULFATE ION, TRAF2 and NCK-interacting protein kinase, cis-4-{[2-(1H-benzimidazol-5-ylamino)quinazolin-8-yl]oxy}cyclohexanol
著者Ohbayashi, N, Kukimoto-Niino, M, Yamada, T, Shirouzu, M.
登録日2015-08-13
公開日2016-08-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献TNIK inhibition abrogates colorectal cancer stemness
Nat Commun, 7, 2016
1D7Y
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BU of 1d7y by Molmil
CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4
分子名称: FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
著者Senda, T, Yamada, T, Sakurai, N, Kubota, M, Nishizaki, T, Masai, E, Fukuda, M, Mitsui, Y.
登録日1999-10-21
公開日2000-12-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1F3P
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BU of 1f3p by Molmil
FERREDOXIN REDUCTASE (BPHA4)-NADH COMPLEX
分子名称: FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Senda, T, Yamada, T, Sakurai, N, Kubota, M, Nishizaki, T, Masai, E, Fukuda, M, Mitsuidagger, Y.
登録日2000-06-06
公開日2001-06-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
4L25
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BU of 4l25 by Molmil
Crystal structure of DNA duplex containing consecutive T-T mispairs
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*TP*TP*TP*CP*GP*CP*G)-3')
著者Kondo, J, Yamada, T, Hirose, C, Tanaka, Y, Ono, A.
登録日2013-06-04
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl., 53, 2014
4L24
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BU of 4l24 by Molmil
Crystal structure of metallo-DNA duplex containing consecutive T-Hg(II)-T base pairs
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*TP*TP*TP*CP*GP*CP*G)-3'), MERCURY (II) ION
著者Kondo, J, Yamada, T, Hirose, C, Okamoto, I, Tanaka, Y, Ono, A.
登録日2013-06-04
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl., 53, 2014
4L26
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BU of 4l26 by Molmil
Crystal structure of DNA duplex containing consecutive T-T mispairs (Br-derivative)
分子名称: DNA (5'-D(*CP*GP*(CBR)P*GP*AP*TP*TP*TP*CP*GP*CP*G)-3')
著者Kondo, J, Yamada, T, Hirose, C, Tanaka, Y, Ono, A.
登録日2013-06-04
公開日2014-03-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-Hg(II) -T Base Pairs
Angew.Chem.Int.Ed.Engl., 53, 2014
3OTJ
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BU of 3otj by Molmil
A Crystal Structure of Trypsin Complexed with BPTI (Bovine Pancreatic Trypsin Inhibitor) by X-ray/Neutron Joint Refinement
分子名称: CALCIUM ION, Cationic trypsin, Pancreatic trypsin inhibitor, ...
著者Kawamura, K, Yamada, T, Kurihara, K, Tamada, T, Kuroki, R, Tanaka, I, Takahashi, H, Niimura, N.
登録日2010-09-12
公開日2011-01-26
最終更新日2017-11-08
実験手法NEUTRON DIFFRACTION (2.15 Å), X-RAY DIFFRACTION
主引用文献X-ray and neutron protein crystallographic analysis of the trypsin-BPTI complex.
Acta Crystallogr.,Sect.D, 67, 2011
8DXQ
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BU of 8dxq by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 4
分子名称: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
著者Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
登録日2022-08-02
公開日2023-03-22
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
8DXP
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BU of 8dxp by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 3
分子名称: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
著者Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
登録日2022-08-02
公開日2023-03-22
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
8DXO
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BU of 8dxo by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 2
分子名称: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
著者Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
登録日2022-08-02
公開日2023-03-22
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
8DXN
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BU of 8dxn by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 1
分子名称: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
著者Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
登録日2022-08-02
公開日2023-03-22
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
8DXR
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BU of 8dxr by Molmil
Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 5
分子名称: Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
著者Takahashi, H, Yamada, T, Denton, J.S, Strange, K, Karakas, E.
登録日2022-08-02
公開日2023-03-22
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.
Elife, 12, 2023
5XO2
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BU of 5xo2 by Molmil
Crystal structure of human paired immunoglobulin-like type 2 receptor alpha with synthesized glycopeptide II
分子名称: N-acetyl-alpha-neuraminic acid-(2-6)-2-acetamido-2,4-dideoxy-alpha-D-xylo-hexopyranose, Paired immunoglobulin-like type 2 receptor alpha, Peptide from Envelope glycoprotein B
著者Furukawa, A, Kakita, K, Yamada, T, Ishizuka, M, Sakamoto, J, Hatori, N, Maeda, N, Ohsaka, F, Saitoh, T, Nomura, T, Kuroki, K, Nambu, H, Arase, H, Matsunaga, S, Anada, M, Ose, T, Hashimoto, S, Maenaka, K.
登録日2017-05-25
公開日2017-10-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献Structural and thermodynamic analyses reveal critical features of glycopeptide recognition by the human PILR alpha immune cell receptor.
J. Biol. Chem., 292, 2017
5AX9
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BU of 5ax9 by Molmil
Crystal structure of the kinase domain of human TRAF2 and NCK-interacting protein kinase in complex with compund 9
分子名称: 4-methoxy-3-[2-[(3-methoxy-4-morpholin-4-yl-phenyl)amino]pyridin-4-yl]benzenecarbonitrile, SULFATE ION, TRAF2 and NCK-interacting protein kinase
著者Ohbayashi, N, Kukimoto-Niino, M, Yamada, T, Shirouzu, M.
登録日2015-07-21
公開日2016-07-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献TNIK inhibition abrogates colorectal cancer stemness
Nat Commun, 7, 2016
6L9C
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BU of 6l9c by Molmil
Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4
分子名称: COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION
著者Murakawa, T, Kurihara, K, Shoji, M, Shibazaki, C, Sunami, T, Tamada, T, Yano, N, Yamada, T, Kusaka, K, Suzuki, M, Shigeta, Y, Kuroki, R, Hayashi, H, Yano, Y, Tanizawa, K, Adachi, M, Okajima, T.
登録日2019-11-08
公開日2020-04-29
最終更新日2023-11-22
実験手法NEUTRON DIFFRACTION (1.14 Å), X-RAY DIFFRACTION
主引用文献Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing.
Proc.Natl.Acad.Sci.USA, 117, 2020
3FHP
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BU of 3fhp by Molmil
A neutron crystallographic analysis of a porcine 2Zn insulin at 2.0 A resolution
分子名称: Insulin, ZINC ION
著者Iwai, W, Kurihara, K, Yamada, T, Kobayashi, Y, Ohnishi, Y, Tanaka, I, Takahashi, H, Niimura, N.
登録日2008-12-09
公開日2009-10-20
最終更新日2023-11-01
実験手法NEUTRON DIFFRACTION (2 Å)
主引用文献A neutron crystallographic analysis of T6 porcine insulin at 2.1 A resolution
Acta Crystallogr.,Sect.D, 65, 2009
7YF6
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BU of 7yf6 by Molmil
Crystal structure of HIV-1 protease in complex with macrocyclic peptide
分子名称: MAGNESIUM ION, Macrocyclic Peptide, Protease
著者Kusumoto, Y, Sato, S, Yamada, T, Kozono, I, Nakata, Z, Asada, N, Mitsuki, S, Wakasa-Morimoto, C, Tohru, M, Watanabe, A, Hayashi, K, Mikamiyama, H.
登録日2022-07-07
公開日2022-11-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Highly Potent and Oral Macrocyclic Peptides as a HIV-1 Protease Inhibitor: mRNA Display-Derived Hit-to-Lead Optimization.
Acs Med.Chem.Lett., 13, 2022
3GNE
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BU of 3gne by Molmil
Crystal structure of alginate lyase vAL-1 from Chlorella virus
分子名称: CITRATE ANION, GLYCEROL, VAL-1
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-03-17
公開日2009-10-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3IM0
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BU of 3im0 by Molmil
Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0)
分子名称: VAL-1, beta-D-glucopyranuronic acid
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-08-08
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
6II1
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BU of 6ii1 by Molmil
Crystal Structure Analysis of CO form hemoglobin from Bos taurus
分子名称: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Kihira, K, Morita, Y, Yamada, T, Kureishi, M, Komatsu, T.
登録日2018-10-03
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Quaternary Structure Analysis of a Hemoglobin Core in Hemoglobin-Albumin Cluster.
J Phys Chem B, 122, 2018
6IHX
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BU of 6ihx by Molmil
Crystal Structure Analysis of bovine Hemoglobin modified by SNP
分子名称: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
著者Kihira, K, Morita, Y, Yamada, T, Kureishi, M, Komatsu, T.
登録日2018-10-03
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Quaternary Structure Analysis of a Hemoglobin Core in Hemoglobin-Albumin Cluster.
J Phys Chem B, 122, 2018
1RY0
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BU of 1ry0 by Molmil
Structure of prostaglandin F synthase with prostaglandin D2
分子名称: Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROSTAGLANDIN D2
著者Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
登録日2003-12-19
公開日2004-11-02
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
1RG9
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S-Adenosylmethionine synthetase complexed with SAM and PPNP
分子名称: (DIPHOSPHONO)AMINOPHOSPHONIC ACID, MAGNESIUM ION, POTASSIUM ION, ...
著者Komoto, J, Yamada, T, Takata, Y, Markham, G.D, Takusagawa, F.
登録日2003-11-11
公開日2004-03-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the S-adenosylmethionine synthetase ternary complex: a novel catalytic mechanism of s-adenosylmethionine synthesis from ATP and MET.
Biochemistry, 43, 2004

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