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Crystal structure of OY phytoplasma SAP05 in complex with AtSPL5
分子名称:	Sequence-variable mosaic (SVM) signal sequence domain-containing protein, Squamosa promoter-binding-like protein 5, ZINC ION
著者	Dong, C, Yan, X, Yuan, X.
登録日	2023-04-19
公開日	2024-02-28
最終更新日	2024-05-08
実験手法	X-RAY DIFFRACTION (1.66 Å)
主引用文献	Molecular basis of SAP05-mediated ubiquitin-independent proteasomal degradation of transcription factors. Nat Commun, 15, 2024

8J48

Crystal structure of OY phytoplasma SAP05 in complex with AtGATA18
分子名称:	GATA transcription factor 18, Sequence-variable mosaic (SVM) signal sequence domain-containing protein, ZINC ION
著者	Dong, C, Yan, X, Yuan, X.
登録日	2023-04-19
公開日	2024-02-28
最終更新日	2024-05-08
実験手法	X-RAY DIFFRACTION (1.94 Å)
主引用文献	Molecular basis of SAP05-mediated ubiquitin-independent proteasomal degradation of transcription factors. Nat Commun, 15, 2024

4YG3

Structural basis of glycan recognition in neonate-specific rotaviruses
分子名称:	Outer capsid protein VP4, SULFATE ION
著者	Hu, L, Prasad, B.V.V.
登録日	2015-02-25
公開日	2015-09-30
最終更新日	2023-09-27
実験手法	X-RAY DIFFRACTION (2.285 Å)
主引用文献	Structural basis of glycan specificity in neonate-specific bovine-human reassortant rotavirus. Nat Commun, 6, 2015

5X5J

Crystal structure of response regulator AdeR receiver domain
分子名称:	AdeR
著者	Wen, Y.
登録日	2017-02-16
公開日	2017-08-30
最終更新日	2024-03-27
実験手法	X-RAY DIFFRACTION (1.401 Å)
主引用文献	Mechanistic insight into how multidrug resistant Acinetobacter baumannii response regulator AdeR recognizes an intercistronic region. Nucleic Acids Res., 45, 2017

5XJP

Crystal structure of response regulator AdeR receiver domain with Mg
分子名称:	AdeR, MAGNESIUM ION
著者	Wen, Y.
登録日	2017-05-03
公開日	2017-08-30
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (1.597 Å)
主引用文献	Mechanistic insight into how multidrug resistant Acinetobacter baumannii response regulator AdeR recognizes an intercistronic region. Nucleic Acids Res., 45, 2017

5YGF

Crystal structure of Drosophila melanogaster Papi extended Tudor domain (D287A) in complex with Piwi N-terminal R10-unme peptide
分子名称:	ASP-GLN-GLY-ARG-GLY-ARG-ARG-ARG-PRO, GH18329p
著者	Zhang, Y.H, Huang, Y.
登録日	2017-09-22
公開日	2018-03-14
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (1.698 Å)
主引用文献	Structural insights into the sequence-specific recognition of Piwi byDrosophilaPapi Proc. Natl. Acad. Sci. U.S.A., 115, 2018

5YGD

Crystal structure of Drosophila melanogaster Papi extended Tudor domain (D287A) in complex with Piwi N-terminal R10me2s peptide
分子名称:	ASP-GLN-GLY-ARG-GLY-ARG-2MR-ARG-PRO-LEU-ASN, GH18329p
著者	Zhang, Y.H, Huang, Y.
登録日	2017-09-22
公開日	2018-03-14
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (1.551 Å)
主引用文献	Structural insights into the sequence-specific recognition of Piwi byDrosophilaPapi Proc. Natl. Acad. Sci. U.S.A., 115, 2018

5YGB

Crystal structure of drosophila melanogaster Papi extended Tudor domain mutant - D287A
分子名称:	GH18329p
著者	Zhang, Y.H, Huang, Y.
登録日	2017-09-22
公開日	2018-03-14
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (1.4 Å)
主引用文献	Structural insights into the sequence-specific recognition of Piwi byDrosophilaPapi Proc. Natl. Acad. Sci. U.S.A., 115, 2018

5YGC

Crystal structure of Drosophila melanogaster Papi extended Tudor domain
分子名称:	GH18329p
著者	Zhang, Y.H, Huang, Y.
登録日	2017-09-22
公開日	2018-03-14
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Structural insights into the sequence-specific recognition of Piwi byDrosophilaPapi Proc. Natl. Acad. Sci. U.S.A., 115, 2018

6IEW

The crystal structure of the dNxf2 UBA domain in complex with Panoramix
分子名称:	Fusion protein of Nuclear RNA export factor 2 and Protein panoramix, GLYCEROL
著者	Huang, Y, Cheng, S.
登録日	2018-09-17
公開日	2019-08-21
最終更新日	2024-03-27
実験手法	X-RAY DIFFRACTION (1.5 Å)
主引用文献	A Pandas complex adapted for piRNA-guided transcriptional silencing and heterochromatin formation. Nat.Cell Biol., 21, 2019

8HI1

Streptococcus thermophilus Cas1-Cas2- prespacer ternary complex
分子名称:	CRISPR-associated endonuclease Cas1, DNA (26-MER), DNA (31-MER), ...
著者	Chen, Q, Luo, Y.
登録日	2022-11-18
公開日	2023-09-13
最終更新日	2023-09-20
実験手法	ELECTRON MICROSCOPY (3.09 Å)
主引用文献	DnaQ mediates directional spacer acquisition in the CRISPR-Cas system by a time-dependent mechanism. Innovation (N Y), 4, 2023

6IHJ

Crystal structure of Drosophila Nxf1 NTF2 domain in complex with Nxt1/p15
分子名称:	NTF2-related export protein, Nuclear RNA export factor 1
著者	Huang, Y, Yuan, X.
登録日	2018-09-30
公開日	2019-08-14
最終更新日	2023-11-22
実験手法	X-RAY DIFFRACTION (2.7 Å)
主引用文献	A Pandas complex adapted for piRNA-guided transcriptional silencing and heterochromatin formation. Nat.Cell Biol., 21, 2019

3SR2

Crystal Structure of Human XLF-XRCC4 Complex
分子名称:	DNA repair protein XRCC4, Non-homologous end-joining factor 1
著者	Hammel, M, Classen, S, Tainer, J.A.
登録日	2011-07-06
公開日	2011-07-20
最終更新日	2023-09-13
実験手法	X-RAY DIFFRACTION (3.9708 Å)
主引用文献	XRCC4 Protein Interactions with XRCC4-like Factor (XLF) Create an Extended Grooved Scaffold for DNA Ligation and Double Strand Break Repair. J.Biol.Chem., 286, 2011

3U2Z

Activator-Bound Structure of Human Pyruvate Kinase M2
分子名称:	1,6-di-O-phosphono-beta-D-fructofuranose, 6-(3-aminobenzyl)-4-methyl-2-methylsulfinyl-4,6-dihydro-5H-thieno[2',3':4,5]pyrrolo[2,3-d]pyridazin-5-one, Pyruvate kinase isozymes M1/M2, ...
著者	Hong, B, Dimov, S, Tempel, W, Auld, D, Thomas, C, Boxer, M, Jianq, J.-K, Skoumbourdis, A, Min, S, Southall, N, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Inglese, J, Park, H, Structural Genomics Consortium (SGC)
登録日	2011-10-04
公開日	2012-09-12
最終更新日	2023-09-13
実験手法	X-RAY DIFFRACTION (2.1 Å)
主引用文献	Pyruvate kinase M2 activators promote tetramer formation and suppress tumorigenesis. Nat.Chem.Biol., 8, 2012

7XIY

SARS-CoV-2 Omicron BA.3 variant spike
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者	Wang, X, Wang, L.
登録日	2022-04-14
公開日	2022-07-13
最終更新日	2022-08-31
実験手法	ELECTRON MICROSCOPY (3.07 Å)
主引用文献	BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

7X6A

SARS-CoV-2 BA.2 variant spike protein in complex with Fab BD55-5840
分子名称:	Heavy chain of Fab BD55-5840, Light chain of Fab BD55-5840, Spike glycoprotein
著者	Wang, X, Wang, L.
登録日	2022-03-07
公開日	2022-07-13
最終更新日	2022-08-31
実験手法	ELECTRON MICROSCOPY (3.5 Å)
主引用文献	BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

7XNQ

SARS-CoV-2 Omicron BA.4 variant spike
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者	Wang, X, Wang, L.
登録日	2022-04-29
公開日	2022-07-13
最終更新日	2022-08-31
実験手法	ELECTRON MICROSCOPY (3.52 Å)
主引用文献	BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

7XIW

SARS-CoV-2 Omicron BA.2 variant spike (state 1)
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者	Wang, X, Wang, L.
登録日	2022-04-14
公開日	2022-07-13
最終更新日	2022-08-31
実験手法	ELECTRON MICROSCOPY (3.62 Å)
主引用文献	BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

7XNR

SARS-CoV-2 Omicron BA.2.13 variant spike
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者	Wang, X, Wang, L.
登録日	2022-04-29
公開日	2022-07-13
最終更新日	2022-08-31
実験手法	ELECTRON MICROSCOPY (3.49 Å)
主引用文献	BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

7XNS

SARS-CoV-2 Omicron BA.4 variant spike
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者	Wang, X, Wang, L.
登録日	2022-04-29
公開日	2022-07-13
最終更新日	2022-08-31
実験手法	ELECTRON MICROSCOPY (3.48 Å)
主引用文献	BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

7XIZ

SARS-CoV-2 Omicron BA.3 variant spike (local)
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1
著者	Wang, X, Wang, L.
登録日	2022-04-14
公開日	2022-07-13
最終更新日	2022-08-31
実験手法	ELECTRON MICROSCOPY (3.74 Å)
主引用文献	BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

7XIX

SARS-CoV-2 Omicron BA.2 variant spike (state 2)
分子名称:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者	Wang, X, Wang, L.
登録日	2022-04-14
公開日	2022-07-13
最終更新日	2022-08-31
実験手法	ELECTRON MICROSCOPY (3.25 Å)
主引用文献	BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature, 608, 2022

7JU8

X-ray structure of MMP-13 in Complex with 4-(1,2,3-thiadiazol-4-yl)pyridine
分子名称:	4-(1,2,3-thiadiazol-4-yl)pyridine, CALCIUM ION, Collagenase 3, ...
著者	Farrow, N.A.
登録日	2020-08-19
公開日	2021-08-04
最終更新日	2023-10-18
実験手法	X-RAY DIFFRACTION (2 Å)
主引用文献	Indole Inhibitors of MMP-13 for Arthritic Disorders Acs Omega, 6, 2021

8HCI

Crystal structure of a holoenzyme Fe-free TglHI for Pseudomonas syringae Peptidyl (S) 2-mercaptoglycine biosynthesis
分子名称:	DUF692 family protein, RiPP Recognition protein
著者	Cheng, W, Zheng, Y.H, Fu, X.L.
登録日	2022-11-01
公開日	2023-08-23
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (3.399 Å)
主引用文献	Structures of the holoenzyme TglHI required for 3-thiaglutamate biosynthesis. Structure, 31, 2023

8HI8

Crystal structure of a holoenzyme TglHI with three Fe ions for Pseudomonas syringae Peptidyl (S) 2-mercaptoglycine biosynthesis
分子名称:	DUF692 family protein, FE (III) ION, RiPP Recognition Protein
著者	Cheng, W, Zheng, Y.H, Fu, X.L.
登録日	2022-11-18
公開日	2023-08-23
最終更新日	2023-10-25
実験手法	X-RAY DIFFRACTION (3.49 Å)
主引用文献	Structures of the holoenzyme TglHI required for 3-thiaglutamate biosynthesis. Structure, 31, 2023

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