Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3ZFZ
DownloadVisualize
BU of 3zfz by Molmil
Crystal structure of ceftaroline acyl-PBP2a from MRSA with non- covalently bound ceftaroline and muramic acid at allosteric site obtained by soaking
分子名称: CADMIUM ION, CHLORIDE ION, Ceftaroline, ...
著者Otero, L.H, Rojas-Altuve, A, Hermoso, J.A.
登録日2012-12-13
公開日2013-10-09
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献How Allosteric Control of Staphylococcus Aureus Penicillin Binding Protein 2A Enables Methicillin Resistance and Physiological Function
Proc.Natl.Acad.Sci.USA, 110, 2013
7JWR
DownloadVisualize
BU of 7jwr by Molmil
Cellular retinol-binding protein 2 (CRBP2) in complex with 2-oleoylglycerol
分子名称: 1,3-dihydroxypropan-2-yl (9Z)-octadec-9-enoate, Retinol-binding protein 2
著者Silvaroli, J.A, Banarjee, S, Golczak, M.
登録日2020-08-26
公開日2021-03-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.30000067 Å)
主引用文献Molecular basis for the interaction of cellular retinol binding protein 2 (CRBP2) with nonretinoid ligands.
J.Lipid Res., 62, 2021
7JX2
DownloadVisualize
BU of 7jx2 by Molmil
Cellular retinol-binding protein 2 (CRBP2) in complex with 2-palmitoylglycerol
分子名称: 1,3-dihydroxypropan-2-yl hexadecanoate, Retinol-binding protein 2
著者Silvaroli, J.A, Banarjee, S, Golczak, M.
登録日2020-08-26
公開日2021-03-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Molecular basis for the interaction of cellular retinol binding protein 2 (CRBP2) with nonretinoid ligands.
J.Lipid Res., 62, 2021
5E7I
DownloadVisualize
BU of 5e7i by Molmil
Crystal structure of the active catalytic core of the human DEAD-box protein DDX3
分子名称: ATP-dependent RNA helicase DDX3X
著者Floor, S.N, Condon, K.J, Doudna, J.A.
登録日2015-10-12
公開日2015-12-02
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.223 Å)
主引用文献Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3.
J.Biol.Chem., 291, 2016
7JWD
DownloadVisualize
BU of 7jwd by Molmil
Cellular retinol-binding protein 2 (CRBP2) in complex with 2-linoleoylglycerol
分子名称: 1,3-dihydroxypropan-2-yl (9Z,12Z)-octadeca-9,12-dienoate, Retinol-binding protein 2
著者Silvaroli, J.A, Banarjee, S, Golczak, M.
登録日2020-08-25
公開日2021-03-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.35000193 Å)
主引用文献Molecular basis for the interaction of cellular retinol binding protein 2 (CRBP2) with nonretinoid ligands.
J.Lipid Res., 62, 2021
7K3I
DownloadVisualize
BU of 7k3i by Molmil
Cellular retinol-binding protein 2 (CRBP2) in complex with 2-lauroylglycerol
分子名称: 1,3-dihydroxypropan-2-yl dodecanoate, Retinol-binding protein 2
著者Adams, C, Silvaroli, J.A, Banarjee, S, Golczak, M.
登録日2020-09-11
公開日2021-03-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Molecular basis for the interaction of cellular retinol binding protein 2 (CRBP2) with nonretinoid ligands.
J.Lipid Res., 62, 2021
5DMF
DownloadVisualize
BU of 5dmf by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in complex with a 4-fluorophenylamino-substituted, methyl triaryl-ethylene derivative 4,4'-(2-{3-[(4-fluorophenyl)amino]phenyl}prop-1-ene-1,1-diyl)diphenol
分子名称: 4,4'-(2-{3-[(4-fluorophenyl)amino]phenyl}prop-1-ene-1,1-diyl)diphenol, Estrogen receptor, Nuclear receptor coactivator 2
著者Nwachukwu, J.C, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
登録日2015-09-08
公開日2016-05-04
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
5E8E
DownloadVisualize
BU of 5e8e by Molmil
Crystal structure of thrombin bound to an exosite 1-specific IgA Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, ...
著者Baglin, T.P, Langdown, J, Frasson, R, Huntington, J.A.
登録日2015-10-14
公開日2015-10-28
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Discovery and characterization of an antibody directed against exosite I of thrombin.
J.Thromb.Haemost., 14, 2016
3GJD
DownloadVisualize
BU of 3gjd by Molmil
Crystal Structure of LeuT with bound OG
分子名称: CHLORIDE ION, LEUCINE, SODIUM ION, ...
著者Winther, A.M.L, Quick, M, Javitch, J.A, Nissen, P.
登録日2009-03-08
公開日2009-04-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Binding of an octylglucoside detergent molecule in the second substrate (S2) site of LeuT establishes an inhibitor-bound conformation
Proc.Natl.Acad.Sci.USA, 106, 2009
5DUH
DownloadVisualize
BU of 5duh by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a Sulfoxide-bridged Oxabicyclic Heptene Sulfonate (SOBHS)-3 analog phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-3-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide
分子名称: Estrogen receptor, Nuclear receptor coactivator 2, phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-3-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide
著者Nwachukwu, J.C, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
登録日2015-09-18
公開日2016-05-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
3GDT
DownloadVisualize
BU of 3gdt by Molmil
Crystal structure of the D91N mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae complexed with 6-azauridine 5'-monophosphate
分子名称: 6-AZA URIDINE 5'-MONOPHOSPHATE, Orotidine 5'-phosphate decarboxylase
著者Fedorov, A.A, Fedorov, E.V, Wood, B.M, Gerlt, J.A, Almo, S.C.
登録日2009-02-24
公開日2009-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Mechanism of the orotidine 5'-monophosphate decarboxylase-catalyzed reaction: evidence for substrate destabilization.
Biochemistry, 48, 2009
3GDM
DownloadVisualize
BU of 3gdm by Molmil
Crystal structure of the K93R mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae
分子名称: Orotidine 5'-phosphate decarboxylase
著者Fedorov, A.A, Fedorov, E.V, Wood, B.M, Gerlt, J.A, Almo, S.C.
登録日2009-02-24
公開日2010-02-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of the K93R mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae.
To be Published
5DTE
DownloadVisualize
BU of 5dte by Molmil
Crystal Structure of an ABC transporter periplasmic solute binding protein (IPR025997) from Actinobacillus succinogenes 130z(Asuc_0081, TARGET EFI-511065) with bound D-allose
分子名称: Monosaccharide-transporting ATPase, beta-D-allopyranose
著者Yadava, U, Vetting, M.W, Al Obaidi, N.F, Toro, R, Morisco, L.L, Benach, J, Koss, J, Wasserman, S.R, Attonito, J.D, Scott Glenn, A, Chamala, S, Chowdhury, S, Lafleur, J, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
登録日2015-09-18
公開日2015-10-07
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of an ABC transporter periplasmic solute binding protein (IPR025997) from Actinobacillus succinogenes 130z(Asuc_0081, TARGET EFI-511065) with bound D-allose
To be published
5DZ1
DownloadVisualize
BU of 5dz1 by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 4,4'-[(4-ethylcyclohexylidene)methanediyl]diphenol
分子名称: 4,4'-[(4-ethylcyclohexylidene)methanediyl]diphenol, Estrogen receptor, Nuclear receptor coactivator 2
著者Nwachukwu, J.C, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
登録日2015-09-25
公開日2016-05-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
5DUG
DownloadVisualize
BU of 5dug by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with a Sulfoxide-bridged Oxabicyclic Heptene Sulfonate (SOBHS)-2 analog phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide
分子名称: Estrogen receptor, Nuclear receptor coactivator 2, phenyl (1S,2S,4S,7S)-5,6-bis(4-hydroxy-2-methylphenyl)-7-thiabicyclo[2.2.1]hept-5-ene-2-sulfonate 7-oxide
著者Nwachukwu, J.C, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
登録日2015-09-18
公開日2016-05-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.252 Å)
主引用文献Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
3GIS
DownloadVisualize
BU of 3gis by Molmil
Crystal Structure of Na-free Thrombin in Complex with Thrombomodulin
分子名称: CALCIUM ION, Prothrombin, SULFATE ION, ...
著者Adams, T.E, Huntington, J.A.
登録日2009-03-06
公開日2009-08-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular basis of thrombomodulin activation of slow thrombin
J.Thromb.Haemost., 7, 2009
3ZT9
DownloadVisualize
BU of 3zt9 by Molmil
The bacterial stressosome: a modular system that has been adapted to control secondary messenger signaling
分子名称: DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, SERINE PHOSPHATASE
著者Quin, M.B, Berrisford, J.M, Newman, J.A, Basle, A, Lewis, R.J, Marles-Wright, J.
登録日2011-07-06
公開日2012-02-22
最終更新日2018-10-24
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The Bacterial Stressosome: A Modular System that Has Been Adapted to Control Secondary Messenger Signaling.
Structure, 20, 2012
3ZLF
DownloadVisualize
BU of 3zlf by Molmil
Structure of group A Streptococcal enolase K312A mutant
分子名称: ENOLASE, PHOSPHATE ION
著者Cork, A.J, Ericsson, D.J, Law, R.H.P, Casey, L.W, Valkov, E, Bertozzi, C, Stamp, A, Aquilina, J.A, Whisstock, J.C, Walker, M.J, Kobe, B.
登録日2013-01-31
公開日2014-02-05
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Stability of the Octameric Structure Affects Plasminogen-Binding Capacity of Streptococcal Enolase.
Plos One, 10, 2015
3ZH3
DownloadVisualize
BU of 3zh3 by Molmil
crystal structure of S. pneumoniae D39 native MurA1
分子名称: UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE
著者Gutierrez-Fernandez, J, Hermoso, J.A.
登録日2012-12-20
公開日2013-04-24
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Heteroresistance to Fosfomycin is Predominant in Streptococcus Pneumoniae and Depends on Mura1 Gene.
Antimicrob.Agents Chemother., 57, 2013
5DXM
DownloadVisualize
BU of 5dxm by Molmil
Crystal Structure of the ER-alpha Ligand-binding Domain in Complex with the Cyclofenil Derivative 3-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(4-hydroxyphenyl)methyl]phenol
分子名称: 3-[(E)-(1s,5s)-bicyclo[3.3.1]non-9-ylidene(4-hydroxyphenyl)methyl]phenol, Estrogen receptor, Nuclear receptor coactivator 2
著者Nwachukwu, J.C, Srinivasan, S, Zheng, Y, Wang, S, Min, J, Dong, C, Liao, Z, Cavett, V, Nowak, J, Houtman, R, Carlson, K.E, Josan, J.S, Elemento, O, Katzenellenbogen, J.A, Zhou, H.B, Nettles, K.W.
登録日2015-09-23
公開日2016-05-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Predictive features of ligand-specific signaling through the estrogen receptor.
Mol.Syst.Biol., 12, 2016
3GJC
DownloadVisualize
BU of 3gjc by Molmil
Crystal Structure of the E290S mutant of LeuT with bound OG
分子名称: LEUCINE, SODIUM ION, Transporter, ...
著者Winther, A.M.L, Quick, M, Javitch, J.A, Nissen, P.
登録日2009-03-08
公開日2009-04-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Binding of an octylglucoside detergent molecule in the second substrate (S2) site of LeuT establishes an inhibitor-bound conformation
Proc.Natl.Acad.Sci.USA, 106, 2009
5E3F
DownloadVisualize
BU of 5e3f by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS I92K at cryogenic temperature
分子名称: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
著者Skerritt, L.A, Caro, J.A, Heroux, A, Schlessman, J.L, Garcia-Moreno E, B.
登録日2015-10-02
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of Staphylococcal nuclease variant Delta+PHS I92K at cryogenic temperature
To be Published
3GP6
DownloadVisualize
BU of 3gp6 by Molmil
Crystal structure of PagP in SDS/MPD
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, DODECYL SULFATE, ...
著者Cuesta-Seijo, J.A, Prive, G.G.
登録日2009-03-20
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献PagP crystallized from SDS/cosolvent reveals the route for phospholipid access to the hydrocarbon ruler.
Structure, 18, 2010
3ZG5
DownloadVisualize
BU of 3zg5 by Molmil
Crystal structure of PBP2a from MRSA in complex with peptidoglycan analogue at allosteric
分子名称: CADMIUM ION, CHLORIDE ION, PEPTIDOGLYCAN ANALOGUE, ...
著者Otero, L.H, Rojas-Altuve, A, Hermoso, J.A.
登録日2012-12-14
公開日2013-10-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献How Allosteric Control of Staphylococcus Aureus Penicillin Binding Protein 2A Enables Methicillin Resistance and Physiological Function
Proc.Natl.Acad.Sci.USA, 110, 2013
3GX4
DownloadVisualize
BU of 3gx4 by Molmil
Crystal Structure Analysis of S. Pombe ATL in complex with DNA
分子名称: Alkyltransferase-like protein 1, COBALT HEXAMMINE(III), DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'), ...
著者Tubbs, J.L, Arvai, A.S, Tainer, J.A.
登録日2009-04-01
公開日2009-06-09
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Flipping of alkylated DNA damage bridges base and nucleotide excision repair.
Nature, 459, 2009

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon