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7X12
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BU of 7x12 by Molmil
Crystal structure of ME1 in complex with NADPH
分子名称: MANGANESE (II) ION, NADP-dependent malic enzyme, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Amano, Y.
登録日2022-02-22
公開日2022-07-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Discovery and Characterization of a Novel Allosteric Small-Molecule Inhibitor of NADP + -Dependent Malic Enzyme 1.
Biochemistry, 61, 2022
7X11
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BU of 7x11 by Molmil
Crystal structure of ME1 in complex with NADPH
分子名称: 6-[(7-methyl-2-propyl-imidazo[4,5-b]pyridin-4-yl)methyl]-2-[2-(1H-1,2,3,4-tetrazol-5-yl)phenyl]-1,3-benzothiazole, MANGANESE (II) ION, NADP-dependent malic enzyme, ...
著者Amano, Y.
登録日2022-02-22
公開日2022-07-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Discovery and Characterization of a Novel Allosteric Small-Molecule Inhibitor of NADP + -Dependent Malic Enzyme 1.
Biochemistry, 61, 2022
7FGL
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BU of 7fgl by Molmil
The complex structure of PHF core domain peptide of tau, VQIVYK, and antibody's Fab domain.
分子名称: AMMONIUM ION, Fab Heavy Chain, Fab Light Chain, ...
著者Tsuchida, T, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, T, Ishida, T, Tomoo, K.
登録日2021-07-27
公開日2022-07-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The cross-reaction complex structure with VQIVYK of tau and the antibody's Fab domain.
To Be Published
2D3Q
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BU of 2d3q by Molmil
Crystal Structure of a Decolorizing Peroxidase (DyP) That Catalyses the Biological Oxidation of Anthraquinone Derivatives
分子名称: Decolorizing Peroxidase, PROTOPORPHYRIN IX CONTAINING FE
著者Sato, T, Sugano, Y, Shoda, M.
登録日2005-09-30
公開日2006-09-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278, 2011
6O3Z
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BU of 6o3z by Molmil
Crystal structure of RORgt with 3-cyano-N-(3-{[(3S)-4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl]methyl}-5-fluoro-2-methylphenyl)benzamide (compound 1)
分子名称: 1,2-ETHANEDIOL, 3-cyano-N-(3-{[(3S)-4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl]methyl}-5-fluoro-2-methylphenyl)benzamide, RAR-related orphan receptor C isoform a variant
著者Min, X, Wang, Z.
登録日2019-02-27
公開日2020-03-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Discovery of [1,2,4]Triazolo[1,5-a]pyridine Derivatives as Potent and Orally Bioavailable ROR gamma t Inverse Agonists.
Acs Med.Chem.Lett., 11, 2020
4U72
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BU of 4u72 by Molmil
Crystal structure of 4-phenylimidazole bound form of human indoleamine 2,3-dioxygenase (A260G mutant)
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 4-PHENYL-1H-IMIDAZOLE, Indoleamine 2,3-dioxygenase 1, ...
著者Sugimoto, H, Horitani, M, Kometani, E, Shiro, Y.
登録日2014-07-30
公開日2015-09-02
最終更新日2020-01-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Conformation and Mobility of Active Site Loop is Critical for Substrate Binding and Inhibition in Human Indoleamine 2,3-Dioxygenase
to be published
1RRP
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BU of 1rrp by Molmil
STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX
分子名称: MAGNESIUM ION, NUCLEAR PORE COMPLEX PROTEIN NUP358, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Vetter, I.R, Nowak, C, Nishimoto, T, Kuhlmann, J, Wittinghofer, A.
登録日1999-01-15
公開日1999-05-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: implications for nuclear transport.
Nature, 398, 1999
5X2L
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BU of 5x2l by Molmil
Crystal Structure of Human Serine Racemase
分子名称: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Serine racemase
著者Obita, T, Matsumoto, K, Mori, H, Toyooka, N, Mizuguchi, M.
登録日2017-02-01
公開日2018-01-31
最終更新日2021-02-24
実験手法X-RAY DIFFRACTION (1.806 Å)
主引用文献Design, synthesis, and evaluation of novel inhibitors for wild-type human serine racemase.
Bioorg. Med. Chem. Lett., 2017
8HTA
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BU of 8hta by Molmil
Solution Structure of the C65A/C167A Mutant of Human Lipocalin-type Prostaglandin D Synthase
分子名称: Prostaglandin-H2 D-isomerase
著者Miyamoto, Y, Inui, T.
登録日2022-12-20
公開日2023-04-19
最終更新日2023-08-30
実験手法SOLUTION NMR
主引用文献Structural and interaction analysis of human lipocalin-type prostaglandin D synthase with the poorly water-soluble drug NBQX.
Febs J., 290, 2023
1EQ3
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BU of 1eq3 by Molmil
NMR STRUCTURE OF HUMAN PARVULIN HPAR14
分子名称: PEPTIDYL-PROLYL CIS/TRANS ISOMERASE (PPIASE)
著者Sekerina, E, Rahfeld, U.J, Muller, J, Fischer, G, Bayer, P.
登録日2000-04-02
公開日2001-04-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR solution structure of hPar14 reveals similarity to the peptidyl prolyl cis/trans isomerase domain of the mitotic regulator hPin1 but indicates a different functionality of the protein.
J.Mol.Biol., 301, 2000
2MK4
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BU of 2mk4 by Molmil
Solution structure of ORF2
分子名称: Open reading frame 2
著者Miyakawa, T, Kobayashi, H, Tashiro, M, Yamanaka, H, Tanokura, M.
登録日2014-01-24
公開日2015-03-25
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Basis for Action of the External Chaperone for a Propeptide-deficient Serine Protease from Aeromonas sobria.
J.Biol.Chem., 290, 2015
4X68
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BU of 4x68 by Molmil
Crystal Structure of OP0595 complexed with AmpC
分子名称: (2S,5R)-N-(2-aminoethoxy)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase, NICKEL (II) ION
著者Yamada, M, Watanabe, T.
登録日2014-12-07
公開日2015-07-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献OP0595, a new diazabicyclooctane: mode of action as a serine beta-lactamase inhibitor, antibiotic and beta-lactam 'enhancer'
J.Antimicrob.Chemother., 70, 2015
4X69
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BU of 4x69 by Molmil
Crystal structure of OP0595 complexed with CTX-M-44
分子名称: (2S,5R)-N-(2-aminoethoxy)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, Beta-lactamase Toho-1
著者Yamada, M, Watanabe, T.
登録日2014-12-07
公開日2015-07-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献OP0595, a new diazabicyclooctane: mode of action as a serine beta-lactamase inhibitor, antibiotic and beta-lactam 'enhancer'
J.Antimicrob.Chemother., 70, 2015
2YVJ
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BU of 2yvj by Molmil
Crystal structure of the ferredoxin-ferredoxin reductase (BPHA3-BPHA4)complex
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Biphenyl dioxygenase ferredoxin subunit, FE2/S2 (INORGANIC) CLUSTER, ...
著者Senda, T, Senda, M.
登録日2007-04-12
公開日2007-10-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVF
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BU of 2yvf by Molmil
Crystal structure of ferredoxin reductase BPHA4 (hydroquinone)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, Ferredoxin reductase, ...
著者Senda, T, Senda, M.
登録日2007-04-12
公開日2007-10-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVG
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BU of 2yvg by Molmil
crystal structure of ferredoxin reductase, BPHA4 (blue-semiquinone)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Senda, T, Senda, M.
登録日2007-04-12
公開日2007-10-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
7JTW
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BU of 7jtw by Molmil
Crystal structure of RORgt with compound (4R)-6-[(2,5-dichloro-3-{[(2R,4R)-1-(cyclopentanecarbonyl)-2-methylpiperidin-4-yl]oxy}phenyl)amino]-6-oxo-4-phenylhexanoic acid
分子名称: (4R)-6-[(2,5-dichloro-3-{[(2R,4R)-1-(cyclopentanecarbonyl)-2-methylpiperidin-4-yl]oxy}phenyl)amino]-6-oxo-4-phenylhexanoic acid, GLYCEROL, RAR-related orphan receptor C isoform a variant, ...
著者Min, X, Wang, Z.
登録日2020-08-18
公開日2021-02-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Discovery of 6-Oxo-4-phenyl-hexanoic acid derivatives as ROR gamma t inverse agonists showing favorable ADME profile.
Bioorg.Med.Chem.Lett., 36, 2021
7COQ
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BU of 7coq by Molmil
Hexameric Ring Complex of Engineered V1-ATPase bound to AMP-PNP: A3(De)3_(ANP)1cat
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ...
著者Kosugi, T, Tanabe, M, Koga, N.
登録日2020-08-05
公開日2021-08-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.44 Å)
主引用文献De Novo Design of Allosteric Control into Rotary Motor V1-ATPase by Restoring Lost Function
To Be Published
4U74
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BU of 4u74 by Molmil
Crystal structure of 4-phenylimidazole bound form of human indoleamine 2,3-dioxygenase (G262A mutant)
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 4-PHENYL-1H-IMIDAZOLE, Indoleamine 2,3-dioxygenase 1, ...
著者Sugimoto, H, Horitani, M, Kometani, E, Shiro, Y.
登録日2014-07-30
公開日2015-09-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Conformation and Mobility of Active Site Loop is Critical for Substrate Binding and Inhibition in Human Indoleamine 2,3-Dioxygenase
to be published
7YV1
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BU of 7yv1 by Molmil
Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor LUNA18 and KA30L Fab
分子名称: GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, KA30L Fab H-chain, ...
著者Irie, M, Fukami, T.A, Matsuo, A, Saka, K, Nishimura, M, Saito, H, Torizawa, T, Tanada, M, Ohta, A.
登録日2022-08-18
公開日2023-07-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.454 Å)
主引用文献Validation of a New Methodology to Create Oral Drugs beyond the Rule of 5 for Intracellular Tough Targets.
J.Am.Chem.Soc., 145, 2023
7YUZ
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BU of 7yuz by Molmil
Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP8784
分子名称: AP8784, GUANOSINE-5'-DIPHOSPHATE, IODIDE ION, ...
著者Irie, M, Fukami, T.A, Tanada, M, Ohta, A, Torizawa, T.
登録日2022-08-18
公開日2023-07-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.878 Å)
主引用文献Validation of a New Methodology to Create Oral Drugs beyond the Rule of 5 for Intracellular Tough Targets.
J.Am.Chem.Soc., 145, 2023
8GSY
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BU of 8gsy by Molmil
X-ray structure of Clostridium perfringens pili protein B N-terminal domain
分子名称: Peptidoglycan bound protein
著者Kamitori, S, Yamada, M, Tamai, E.
登録日2022-09-07
公開日2023-06-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains.
Febs Lett., 597, 2023
8GSX
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BU of 8gsx by Molmil
X-ray structure of Clostridium perfringens pili protein B collagen-binding domains
分子名称: ACETATE ION, pili protein
著者Kamitori, S, Yamada, M, Tamai, E.
登録日2022-09-07
公開日2023-06-07
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains.
Febs Lett., 597, 2023
8K9O
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BU of 8k9o by Molmil
Crystal structure of Cyanobacteriochrome RcaE GAF domain in Pg state
分子名称: PHYCOCYANOBILIN, histidine kinase
著者Nagae, T, Hirose, Y, Mishima, M.
登録日2023-08-01
公開日2024-05-15
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Green/red light-sensing mechanism in the chromatic acclimation photosensor.
Sci Adv, 10, 2024
5Z5C
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BU of 5z5c by Molmil
Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) from Fusobacterium nucleatum: lysine-dimethylated form
分子名称: CHLORIDE ION, Cysteine synthase, PYRIDOXAL-5'-PHOSPHATE
著者Kezuka, Y, Yoshida, Y, Nonaka, T.
登録日2018-01-17
公開日2018-02-14
最終更新日2018-03-07
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structural insights into the catalytic mechanism of cysteine (hydroxyl) lyase from the hydrogen sulfide-producing oral pathogen,
Biochem. J., 475, 2018

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