Crystal Structure of a Decolorizing Peroxidase (DyP) That Catalyses the Biological Oxidation of Anthraquinone Derivatives

Summary for 2D3Q

DescriptorDecolorizing Peroxidase, PROTOPORPHYRIN IX CONTAINING FE (3 entities in total)
Functional Keywordsstrands and helix, oxidoreductase
Biological sourceBjerkandera adusta
Total number of polymer chains2
Total molecular weight96227.66
Sato, T.,Sugano, Y.,Shoda, M. (deposition date: 2005-09-30, release date: 2006-09-30, Last modification date: 2011-10-26)
Primary citation
Yoshida, T.,Tsuge, H.,Konno, H.,Hisabori, T.,Sugano, Y.
The catalytic mechanism of dye-decolorizing peroxidase DyP may require the swinging movement of an aspartic acid residue
Febs J., 278:2387-2394, 2011
PubMed: 21569205 (PDB entries with the same primary citation)
DOI: 10.1111/j.1742-4658.2011.08161.x
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.23016 1.1% 3.7% 1.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-09-23