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7X8G
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Crystal structure of ENL T1(H116P) mutant YEATS domain in complex with histone H3 acetylation at K27
分子名称: H3K27ac(24-27) peptide, Protein ENL
著者Li, Y, Peng, B, Li, H.
登録日2022-03-12
公開日2023-01-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Hotspot mutations in the structured ENL YEATS domain link aberrant transcriptional condensates and cancer.
Mol.Cell, 82, 2022
7X8B
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BU of 7x8b by Molmil
Crystal structure of ENL T1 mutant YEATS domain in complex with histone H3 acetylation at K27
分子名称: H3K27ac(24-27) peptide, Protein ENL
著者Li, Y, Peng, B, Li, H.
登録日2022-03-11
公開日2023-01-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Hotspot mutations in the structured ENL YEATS domain link aberrant transcriptional condensates and cancer.
Mol.Cell, 82, 2022
7X8F
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BU of 7x8f by Molmil
Crystal structure of ENL T4 mutant YEATS domain in complex with histone H3 acetylation at K27
分子名称: CHLORIDE ION, H3K27ac(24-27) peptide, Protein ENL
著者Li, Y, Peng, B, Li, H.
登録日2022-03-12
公開日2023-01-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Hotspot mutations in the structured ENL YEATS domain link aberrant transcriptional condensates and cancer.
Mol.Cell, 82, 2022
7JKZ
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BU of 7jkz by Molmil
Bromodomain-containing protein 4 (BRD4) bromodomain 2 (BD2) complexed with YF3-126
分子名称: 1,2-ETHANEDIOL, Bromodomain-containing protein 4, GLYCEROL, ...
著者Ratia, K.M, Xiong, R, Li, Y, Shen, Z, Zhao, J, Huang, F, Dubrovyskyii, O, Thatcher, G.R.
登録日2020-07-29
公開日2021-08-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Novel Pyrrolopyridone Bromodomain and Extra-Terminal Motif (BET) Inhibitors Effective in Endocrine-Resistant ER+ Breast Cancer with Acquired Resistance to Fulvestrant and Palbociclib.
J.Med.Chem., 63, 2020
7JKY
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Bromodomain-containing protein 4 (BRD4) bromodomain 1 (BD1) complexed with YF3-126
分子名称: Bromodomain-containing protein 4, N-(1-[1,1-di(pyridin-2-yl)ethyl]-6-{1-methyl-6-oxo-5-[(piperidin-4-yl)amino]-1,6-dihydropyridin-3-yl}-1H-indol-4-yl)ethanesulfonamide, SODIUM ION
著者Ratia, K.M, Xiong, R, Li, Y, Shen, Z, Zhao, J, Huang, F, Dubrovyskyii, O, Thatcher, G.R.
登録日2020-07-29
公開日2021-08-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Novel Pyrrolopyridone Bromodomain and Extra-Terminal Motif (BET) Inhibitors Effective in Endocrine-Resistant ER+ Breast Cancer with Acquired Resistance to Fulvestrant and Palbociclib.
J.Med.Chem., 63, 2020
7JKW
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BU of 7jkw by Molmil
Bromodomain-containing protein 4 (BRD4) bromodomain 1 (BD1) complexed with ZN1-99
分子名称: Bromodomain-containing protein 4, N-(6-{5-[(azetidin-3-yl)amino]-1-methyl-6-oxo-1,6-dihydropyridin-3-yl}-1-[1,1-di(pyridin-2-yl)ethyl]-1H-indol-4-yl)ethanesulfonamide
著者Ratia, K.M, Xiong, R, Li, Y, Shen, Z, Zhao, J, Huang, F, Dubrovyskyii, O, Thatcher, G.R.
登録日2020-07-29
公開日2021-08-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Novel Pyrrolopyridone Bromodomain and Extra-Terminal Motif (BET) Inhibitors Effective in Endocrine-Resistant ER+ Breast Cancer with Acquired Resistance to Fulvestrant and Palbociclib.
J.Med.Chem., 63, 2020
5Y27
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Crystal structure of Se-Met Dpb4-Dpb3
分子名称: DNA polymerase epsilon subunit D, GLYCEROL, Putative transcription factor C16C4.22
著者Li, Y, Gao, F, Su, M, Zhang, F.B, Chen, Y.H.
登録日2017-07-24
公開日2018-01-24
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Coordinated regulation of heterochromatin inheritance by Dpb3-Dpb4 complex.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8HZW
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BU of 8hzw by Molmil
The NMR structure of noursinH11W peptide
分子名称: noursinH11W
著者Yao, H, Li, Y, Zhang, T, Gao, J, Wang, H.
登録日2023-01-09
公開日2023-05-31
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Discovery and biosynthesis of tricyclic copper-binding ribosomal peptides containing histidine-to-butyrine crosslinks.
Nat Commun, 14, 2023
7WNQ
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BU of 7wnq by Molmil
Cryo-EM structure of AtSLAC1 S59A mutant
分子名称: Guard cell S-type anion channel SLAC1
著者Sun, L, Liu, X, Li, Y.
登録日2022-01-19
公開日2022-04-13
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structure of the Arabidopsis guard cell anion channel SLAC1 suggests activation mechanism by phosphorylation.
Nat Commun, 13, 2022
7YDX
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Crystal structure of human RIPK1 kinase domain in complex with compound RI-962
分子名称: 1-methyl-5-[2-(2-methylpropanoylamino)-[1,2,4]triazolo[1,5-a]pyridin-7-yl]-N-[(1S)-1-phenylethyl]indole-3-carboxamide, IODIDE ION, Receptor-interacting serine/threonine-protein kinase 1
著者Zhang, L, Wang, Y, Li, Y, Wu, C, Luo, X, Wang, T, Lei, J, Yang, S.
登録日2022-07-04
公開日2023-04-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.642 Å)
主引用文献Generative deep learning enables the discovery of a potent and selective RIPK1 inhibitor.
Nat Commun, 13, 2022
8JYZ
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BU of 8jyz by Molmil
Cryo-EM structure of RCD-1 pore from Neurospora crassa
分子名称: Gasdermin-like protein rcd-1-1, Gasdermin-like protein rcd-1-2
著者Hou, Y.J, Sun, Q, Li, Y, Ding, J.
登録日2023-07-04
公開日2024-05-01
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.63 Å)
主引用文献Cleavage-independent activation of ancient eukaryotic gasdermins and structural mechanisms.
Science, 384, 2024
8I17
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Structural basis for H2A-H2B recognitions by human Spt16
分子名称: CHLORIDE ION, FACT complex subunit SPT16, Histone H2A type 1-B/E, ...
著者Huang, H, Li, Y.
登録日2023-01-12
公開日2023-02-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structural basis for H2A-H2B recognitions by human Spt16.
Biochem.Biophys.Res.Commun., 651, 2023
7XYT
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BU of 7xyt by Molmil
Crystal structure of ZER1 bound to AFLH degron
分子名称: Protein zer-1 homolog
著者Dong, C, Yan, X, Li, Y.
登録日2022-06-02
公開日2022-12-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献CRL2 ZER1/ZYG11B recognizes small N-terminal residues for degradation.
Nat Commun, 13, 2022
7E62
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BU of 7e62 by Molmil
Mouse TAB2 NZF in complex with Lys6-linked diubiquitin
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, Ubiquitin, ...
著者Sato, Y, Li, Y, Okatsu, K, Fukai, S.
登録日2021-02-21
公開日2021-08-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural basis for specific recognition of K6-linked polyubiquitin chains by the TAB2 NZF domain.
Biophys.J., 120, 2021
7YFS
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BU of 7yfs by Molmil
The NMR structure of noursin, a tricyclic ribosomal peptide containing a histidine-to-butyrine crosslink
分子名称: noursin
著者Yao, H, Li, Y, Zhang, T, Gao, J, Wang, H.
登録日2022-07-09
公開日2023-05-31
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Discovery and biosynthesis of tricyclic copper-binding ribosomal peptides containing histidine-to-butyrine crosslinks.
Nat Commun, 14, 2023
7XYV
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BU of 7xyv by Molmil
Crystal structure of ZYG11B bound to SFLH degron
分子名称: Protein zyg-11 homolog B
著者Dong, C, Yan, X, Li, Y.
登録日2022-06-02
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献CRL2 ZER1/ZYG11B recognizes small N-terminal residues for degradation.
Nat Commun, 13, 2022
7XYW
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Crystal structure of ZYG11B bound to AFLH degron
分子名称: Protein zyg-11 homolog B
著者Dong, C, Yan, X, Li, Y.
登録日2022-06-02
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献CRL2 ZER1/ZYG11B recognizes small N-terminal residues for degradation.
Nat Commun, 13, 2022
7XYX
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BU of 7xyx by Molmil
Crystal structure of ZYG11B bound to CFLH degron
分子名称: Protein zyg-11 homolog B
著者Dong, C, Yan, X, Li, Y.
登録日2022-06-02
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献CRL2 ZER1/ZYG11B recognizes small N-terminal residues for degradation.
Nat Commun, 13, 2022
7XYS
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BU of 7xys by Molmil
Crystal structure of ZER1 bound to SFLH degron
分子名称: Protein zer-1 homolog
著者Dong, C, Yan, X, Li, Y.
登録日2022-06-02
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献CRL2 ZER1/ZYG11B recognizes small N-terminal residues for degradation.
Nat Commun, 13, 2022
7XYU
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BU of 7xyu by Molmil
Crystal structure of ZER1 bound to TFLH degron
分子名称: Protein zer-1 homolog
著者Dong, C, Yan, X, Li, Y.
登録日2022-06-02
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献CRL2 ZER1/ZYG11B recognizes small N-terminal residues for degradation.
Nat Commun, 13, 2022
7BT6
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BU of 7bt6 by Molmil
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)
分子名称: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
著者Li, Y, Wilson, D.M.
登録日2020-03-31
公開日2020-10-28
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel.
Nat Commun, 11, 2020
7BTB
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Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)
分子名称: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
著者Li, Y, Wilson, D.M.
登録日2020-04-01
公開日2020-10-28
実験手法ELECTRON MICROSCOPY (3.22 Å)
主引用文献Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel.
Nat Commun, 11, 2020
6M62
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BU of 6m62 by Molmil
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.
分子名称: 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, ...
著者Li, Y, Micic, J.
登録日2020-03-12
公開日2020-08-26
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Coupling of 5S RNP rotation with maturation of functional centers during large ribosomal subunit assembly.
Nat Commun, 11, 2020
6MHU
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BU of 6mhu by Molmil
Nucleotide-free Cryo-EM Structure of E.coli LptB2FG Transporter
分子名称: (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-5-[(2~{S},3~{S},4~{R},5~{R},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{R},5~{S},6~{R})-6-[(1~{S})-2-[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-1-oxidanyl-ethyl]-3,4-bis(oxidanyl)-5-phosphonooxy-oxan-2-yl]oxy-3-oxidanyl-5-phosphonooxy-oxan-2-yl]oxy-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{R})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic acid, Lipopolysaccharide export system ATP-binding protein LptB, Lipopolysaccharide export system permease protein LptF, ...
著者Orlando, B.J, Li, Y, Liao, M.
登録日2018-09-18
公開日2019-04-03
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural basis of lipopolysaccharide extraction by the LptB2FGC complex.
Nature, 567, 2019
6MI8
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Cryo-EM Structure of vanadate-trapped E.coli LptB2FGC
分子名称: ADP ORTHOVANADATE, Lipopolysaccharide export system ATP-binding protein LptB, Lipopolysaccharide export system permease protein LptF, ...
著者Orlando, B.J, Li, Y, Liao, M.
登録日2018-09-19
公開日2019-04-03
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural basis of lipopolysaccharide extraction by the LptB2FGC complex.
Nature, 567, 2019

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