Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6G56
DownloadVisualize
BU of 6g56 by Molmil
Apo-structure of the alanine racemase from Staphylococcus aureus
分子名称: Alanine racemase 1, GLYCEROL, SULFATE ION
著者Hoegl, A, Sieber, S.A, Schneider, S.
登録日2018-03-29
公開日2018-05-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Mining the cellular inventory of pyridoxal phosphate-dependent enzymes with functionalized cofactor mimics.
Nat Chem, 10, 2018
3QCR
DownloadVisualize
BU of 3qcr by Molmil
Incomplete structural model of a human telomeric DNA quadruplex-acridine complex.
分子名称: Human telomeric repeat deoxyribonucleic acid, N,N'-[acridine-3,6-diylbis(1H-1,2,3-triazole-1,4-diylbenzene-3,1-diyl)]bis[3-(diethylamino)propanamide], POTASSIUM ION
著者Collie, G.W, Neidle, S, Parkinson, G.N.
登録日2011-01-17
公開日2011-02-16
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis of telomeric RNA quadruplex-acridine ligand recognition.
J.Am.Chem.Soc., 133, 2011
3QSC
DownloadVisualize
BU of 3qsc by Molmil
The first crystal structure of a human telomeric G-quadruplex DNA bound to a metal-containing ligand (a copper complex)
分子名称: 5'-D(*AP*GP*GP*GP*TP*(BRU)P*AP*GP*GP*GP*TP*T)-3', POTASSIUM ION, [2,2'-{(4,5-difluorobenzene-1,2-diyl)bis[(nitrilo-kappaN)methylylidene]}bis{5-[2-(piperidin-1-yl)ethoxy]phenolato-kappaO}(2-)]copper (II)
著者Campbell, N.H, Abd Karim, N.H, Parkinson, G.N, Vilar, R, Neidle, S.
登録日2011-02-21
公開日2011-12-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular basis of structure-activity relationships between salphen metal complexes and human telomeric DNA quadruplexes.
J.Med.Chem., 55, 2012
3QSF
DownloadVisualize
BU of 3qsf by Molmil
The first crystal structure of a human telomeric G-quadruplex DNA bound to a metal-containing ligand (a nickel complex)
分子名称: 5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*T)-3', POTASSIUM ION, [2,2'-{(4,5-difluorobenzene-1,2-diyl)bis[(nitrilo-kappaN)methylylidene]}bis{5-[2-(piperidin-1-yl)ethoxy]phenolato-kappa O}(2-)]nickel (II)
著者Campbell, N.H, Abd Karim, N.H, Parkinson, G.N, Vilar, R, Neidle, S.
登録日2011-02-21
公開日2011-12-07
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular basis of structure-activity relationships between salphen metal complexes and human telomeric DNA quadruplexes.
J.Med.Chem., 55, 2012
3QXR
DownloadVisualize
BU of 3qxr by Molmil
Crystal structure of the brominated CKIT-1 proto-oncogene promoter quadruplex DNA
分子名称: 5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*(BRU)P*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3', MAGNESIUM ION, POTASSIUM ION
著者Wei, D, Parkinson, G.N, Neidle, S.
登録日2011-03-02
公開日2012-01-18
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Crystal structure of a c-kit promoter quadruplex reveals the structural role of metal ions and water molecules in maintaining loop conformation.
Nucleic Acids Res., 40, 2012
3U0U
DownloadVisualize
BU of 3u0u by Molmil
Crystal structure of the DB1883-D(CGCGAATTCGCG)2 complex at 1.24 A resolution
分子名称: 2-(4'-carbamimidoylbiphenyl-4-yl)-1H-indole-6-carboximidamide, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION
著者Wei, D.G, Neidle, S.
登録日2011-09-29
公開日2012-09-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster.
J.Am.Chem.Soc., 135, 2013
3U2N
DownloadVisualize
BU of 3u2n by Molmil
Crystal structure of DNA(CGCGAATTCGCG)2 at 1.25 angstroms
分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION
著者Wei, D.G, Neidle, S.
登録日2011-10-04
公開日2013-04-17
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster.
J.Am.Chem.Soc., 135, 2013
3U08
DownloadVisualize
BU of 3u08 by Molmil
Crystal structure of DB1963-D(CGCGAATTCGCG)2 complex at 1.25 A resolution
分子名称: 4'-(5-carbamimidoyl-1H-benzimidazol-2-yl)biphenyl-4-carboxamide, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION
著者Wei, D.G, Neidle, S.
登録日2011-09-28
公開日2012-09-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster.
J.Am.Chem.Soc., 135, 2013
3U05
DownloadVisualize
BU of 3u05 by Molmil
Crystal structure of DB1804-D(CGCGAATTCGCG)2 complex
分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', 6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole, MAGNESIUM ION
著者Wei, D.G, Neidle, S.
登録日2011-09-28
公開日2012-09-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster.
J.Am.Chem.Soc., 135, 2013
5OL1
DownloadVisualize
BU of 5ol1 by Molmil
Crystal structure of an inactivated Ssp SICLOPPS intein with a CAFHPQ extein
分子名称: 1,2-ETHANEDIOL, BETA-MERCAPTOETHANOL, DNA polymerase III subunit alpha,DNA polymerase III subunit alpha, ...
著者Kick, L.M, Schneider, S.
登録日2017-07-26
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.751 Å)
主引用文献Mechanistic Insights into Cyclic Peptide Generation by DnaE Split-Inteins through Quantitative and Structural Investigation.
Chembiochem, 18, 2017
5OL6
DownloadVisualize
BU of 5ol6 by Molmil
Crystal structure of an inactivated Npu SICLOPPS intein with CAFHPQ extein
分子名称: Nucleic acid binding, OB-fold, tRNA/helicase-type,DNA-directed DNA polymerase
著者Kick, L.M, Schneider, S.
登録日2017-07-26
公開日2017-09-27
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Mechanistic Insights into Cyclic Peptide Generation by DnaE Split-Inteins through Quantitative and Structural Investigation.
Chembiochem, 18, 2017
5OL5
DownloadVisualize
BU of 5ol5 by Molmil
Crystal structure of an inactivated Ssp SICLOPPS intein with CFAHPQ extein
分子名称: 1,2-ETHANEDIOL, COBALT (II) ION, DNA polymerase III subunit alpha,DNA polymerase III subunit alpha, ...
著者Kick, L.M, Schneider, S.
登録日2017-07-26
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.329 Å)
主引用文献Mechanistic Insights into Cyclic Peptide Generation by DnaE Split-Inteins through Quantitative and Structural Investigation.
Chembiochem, 18, 2017
5OL7
DownloadVisualize
BU of 5ol7 by Molmil
Crystal structure of an inactivated Npu SICLOPPS intein with CFAHPQ extein
分子名称: CALCIUM ION, COBALT (II) ION, DNA-directed DNA polymerase,DNA-directed DNA polymerase
著者Kick, L.M, Schneider, S.
登録日2017-07-26
公開日2017-09-27
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Mechanistic Insights into Cyclic Peptide Generation by DnaE Split-Inteins through Quantitative and Structural Investigation.
Chembiochem, 18, 2017
4KWX
DownloadVisualize
BU of 4kwx by Molmil
Linear structure of the Holliday junction sequence (TCGGCGCCGA)
分子名称: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', MAGNESIUM ION
著者Skamrova, G, Laponogov, I, Campbell, N, Neidle, S.
登録日2013-05-24
公開日2014-11-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Linear structure of the Holliday junction sequence (TCGGCGCCGA)
To be Published
4H29
DownloadVisualize
BU of 4h29 by Molmil
B-raf dimer DNA quadruplex
分子名称: DNA (5'-D(*GP*GP*GP*CP*GP*GP*GP*GP*AP*GP*GP*GP*GP*GP*AP*AP*GP*GP*GP*A)-3'), POTASSIUM ION
著者Wei, D, Parkinson, G, Neidle, S.
登録日2012-09-12
公開日2013-07-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.991 Å)
主引用文献Crystal Structure of a Promoter Sequence in the B-raf Gene Reveals an Intertwined Dimer Quadruplex.
J.Am.Chem.Soc., 135, 2013
3CWN
DownloadVisualize
BU of 3cwn by Molmil
Escherichia coli transaldolase b mutant f178y
分子名称: SULFATE ION, Transaldolase B
著者Sandalova, T, Schneider, G, Samland, A.
登録日2008-04-22
公開日2008-08-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Replacement of a Phenylalanine by a Tyrosine in the Active Site Confers Fructose-6-phosphate Aldolase Activity to the Transaldolase of Escherichia coli and Human Origin.
J.Biol.Chem., 283, 2008
8OVT
DownloadVisualize
BU of 8ovt by Molmil
Crystal structure of the ligand-free YeGT glycosyltransferase
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, YeGT glycosyltransferase
著者Wirth, C, Hunte, C.
登録日2023-04-26
公開日2024-05-15
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Tyrosine-modifying glycosylation by Yersinia effectors.
J.Biol.Chem., 300, 2024
8OVS
DownloadVisualize
BU of 8ovs by Molmil
Crystal structure of YeGT glycosyltransferase with bound UDP
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CADMIUM ION, ...
著者Wirth, C, Hunte, C.
登録日2023-04-26
公開日2024-05-22
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.123 Å)
主引用文献Tyrosine-modifying glycosylation by Yersinia effectors.
J.Biol.Chem., 300, 2024
3PY8
DownloadVisualize
BU of 3py8 by Molmil
Crystal structure of a mutant of the large fragment of DNA polymerase I from thermus aquaticus in a closed ternary complex with DNA and ddCTP
分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*A*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), ...
著者Schnur, A, Marx, A, Welte, W, Diederichs, K.
登録日2010-12-12
公開日2011-06-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Learning from Directed Evolution: Thermus aquaticus DNA Polymerase Mutants with Translesion Synthesis Activity.
Chembiochem, 12, 2011
5FX3
DownloadVisualize
BU of 5fx3 by Molmil
Breaking down the wall: mutation of the tyrosine gate of the universal Escherichia coli fimbrial adhesin FimH
分子名称: FimH, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
著者Bouckaert, J.
登録日2016-02-22
公開日2017-01-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mutation of Tyr137 of the universal Escherichia coli fimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding.
IUCrJ, 4, 2017
5FS5
DownloadVisualize
BU of 5fs5 by Molmil
Breaking down the wall: mutation of the tyrosine gate of the universal Escherichia coli fimbrial adhesin FimH
分子名称: FIMH, SODIUM ION, heptyl alpha-D-mannopyranoside
著者Bouckaert, J.
登録日2015-12-30
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Mutation of Tyr137 of the universal Escherichia coli fimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding.
IUCrJ, 4, 2017
5FWR
DownloadVisualize
BU of 5fwr by Molmil
Breaking down the wall: mutation of the tyrosine gate of the universal Escherichia coli fimbrial adhesin FimH
分子名称: FimH, biphenyl-4-yl alpha-D-mannopyranoside
著者Bouckaert, J.
登録日2016-02-21
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Mutation of Tyr137 of the universal Escherichia coli fimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding.
IUCrJ, 4, 2017
4BUQ
DownloadVisualize
BU of 4buq by Molmil
Crystal structure of wild type FimH lectin domain in complex with heptyl alpha-D-mannopyrannoside
分子名称: FIMH, heptyl alpha-D-mannopyranoside
著者Rabbani, S, Bouckaert, J, Zalewski, A, Preston, R, Eid, S, Thompson, A, Puorger, C, Glockshuber, R, Ernst, B.
登録日2013-06-23
公開日2014-02-19
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.199 Å)
主引用文献Validation of Reactivity Descriptors to Assess the Aromatic Stacking within the Tyrosine Gate of Fimh
Acs Med.Chem.Lett., 4, 2013
1E6Z
DownloadVisualize
BU of 1e6z by Molmil
CHITINASE B FROM SERRATIA MARCESCENS WILDTYPE IN COMPLEX WITH CATALYTIC INTERMEDIATE
分子名称: 2-METHYL-4,5-DIHYDRO-(1,2-DIDEOXY-ALPHA-D-GLUCOPYRANOSO)[2,1-D]-1,3-OXAZOLE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Komander, D, Synstad, B, Eijsink, V.G.H, Van Aalten, D.M.F.
登録日2000-08-23
公開日2001-06-22
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural Insights Into the Catalytic Mechanism of a Family 18 Exo-Chitinase
Proc.Natl.Acad.Sci.USA, 98, 2001
1EHV
DownloadVisualize
BU of 1ehv by Molmil
A NEW CRYSTAL STRUCTURE FOR THE DODECAMER C-G-C-G-A-A-T-T-C-G-C-G: SYMMETRY EFFECTS ON SEQUENCE-DEPENDENT DNA STRUCTURE
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
著者Johansson, E.M.
登録日2000-02-23
公開日2000-07-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A new crystal form for the dodecamer C-G-C-G-A-A-T-T-C-G-C-G: symmetry effects on sequence-dependent DNA structure.
J.Mol.Biol., 300, 2000

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon