Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7U8R
DownloadVisualize
BU of 7u8r by Molmil
Structure of porcine kidney V-ATPase with SidK, Rotary State 3
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase H(+)-transporting lysosomal accessory protein 2, ATPase H+ transporting accessory protein 1, ...
Authors:Tan, Y.Z, Keon, K.A.
Deposit date:2022-03-09
Release date:2022-07-06
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7.
Life Sci Alliance, 5, 2022
7U8Q
DownloadVisualize
BU of 7u8q by Molmil
Structure of porcine kidney V-ATPase with SidK, Rotary State 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATPase H(+)-transporting lysosomal accessory protein 2, ATPase H+ transporting accessory protein 1, ...
Authors:Tan, Y.Z, Keon, K.A.
Deposit date:2022-03-09
Release date:2022-07-06
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:CryoEM of endogenous mammalian V-ATPase interacting with the TLDc protein mEAK-7.
Life Sci Alliance, 5, 2022
7K9Z
DownloadVisualize
BU of 7k9z by Molmil
Crystal structure of SARS-CoV-2 receptor binding domain in complex with the Fab fragments of neutralizing antibodies 298 and 52
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 298 Fab Heavy Chain, 298 Fab Light Chain, ...
Authors:Newton, J.C, Kucharska, I, Rujas, E, Cui, H, Julien, J.P.
Deposit date:2020-09-29
Release date:2020-10-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Multivalency transforms SARS-CoV-2 antibodies into ultrapotent neutralizers.
Nat Commun, 12, 2021
2KX4
DownloadVisualize
BU of 2kx4 by Molmil
Solution structure of Bacteriophage Lambda gpFII
Descriptor: Tail attachment protein
Authors:Maxwell, K.L, Cardarelli, L, Neudecker, P, Davidson, A.R, Ontario Centre for Structural Proteomics (OCSP)
Deposit date:2010-04-26
Release date:2010-07-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Phages have adapted the same protein fold to fulfill multiple functions in virion assembly.
Proc.Natl.Acad.Sci.USA, 107, 2010
3JVO
DownloadVisualize
BU of 3jvo by Molmil
Crystal structure of bacteriophage HK97 gp6
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Gp6
Authors:Lam, R, Tuite, A, Battaile, K.P, Edwards, A.M, Maxwell, K.L, Chirgadze, N.Y.
Deposit date:2009-09-17
Release date:2009-11-24
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of bacteriophage HK97 gp6: defining a large family of head-tail connector proteins.
J.Mol.Biol., 395, 2010
2LX4
DownloadVisualize
BU of 2lx4 by Molmil
NMR solution structure of peptide a2N(1-17) from Mus musculus V-ATPase
Descriptor: V-type proton ATPase 116 kDa subunit a isoform 2
Authors:Dip, P, Gruber, G, Marshansky, V.
Deposit date:2012-08-14
Release date:2013-01-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The N Termini of a-Subunit Isoforms Are Involved in Signaling between Vacuolar H+-ATPase (V-ATPase) and Cytohesin-2.
J.Biol.Chem., 288, 2013
6X8S
DownloadVisualize
BU of 6x8s by Molmil
Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein NAND peptide
Descriptor: 1,2-ETHANEDIOL, 3D11 Fab heavy chain, 3D11 Fab light chain, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2020-06-01
Release date:2020-12-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural ordering of the Plasmodium berghei circumsporozoite protein repeats by inhibitory antibody 3D11.
Elife, 9, 2020
6X8Q
DownloadVisualize
BU of 6x8q by Molmil
Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein PAPP peptide
Descriptor: 1,2-ETHANEDIOL, 3D11 Fab heavy chain, 3D11 Fab light chain, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2020-06-01
Release date:2020-12-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural ordering of the Plasmodium berghei circumsporozoite protein repeats by inhibitory antibody 3D11.
Elife, 9, 2020
6X8P
DownloadVisualize
BU of 6x8p by Molmil
Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein NPND peptide
Descriptor: 1,2-ETHANEDIOL, 3D11 Fab heavy chain, 3D11 Fab light chain, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2020-06-01
Release date:2020-12-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structural ordering of the Plasmodium berghei circumsporozoite protein repeats by inhibitory antibody 3D11.
Elife, 9, 2020
6X8U
DownloadVisualize
BU of 6x8u by Molmil
Crystal structure of 3D11 Fab in complex with Plasmodium berghei circumsporozoite protein Mixed peptide
Descriptor: 3D11 Fab heavy chain, 3D11 Fab light chain, GLYCEROL, ...
Authors:Thai, E, Julien, J.P.
Deposit date:2020-06-01
Release date:2020-12-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural ordering of the Plasmodium berghei circumsporozoite protein repeats by inhibitory antibody 3D11.
Elife, 9, 2020
9F9Y
DownloadVisualize
BU of 9f9y by Molmil
SARS-CoV-2 BA-2.87.1 Spike ectodomain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin
Authors:Ren, J, Stuart, D.I, Duyvesteyn, H.M.E.
Deposit date:2024-05-09
Release date:2024-08-21
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Concerted deletions eliminate a neutralizing supersite in SARS-CoV-2 BA.2.87.1 spike.
Structure, 32, 2024
5BXH
DownloadVisualize
BU of 5bxh by Molmil
Crystal structure of pentameric KCTD9 BTB domain
Descriptor: BTB/POZ domain-containing protein KCTD9
Authors:Ji, A.X, Chu, A, Prive, G.G.
Deposit date:2015-06-08
Release date:2015-09-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structural Insights into KCTD Protein Assembly and Cullin3 Recognition.
J.Mol.Biol., 428, 2016
5BXD
DownloadVisualize
BU of 5bxd by Molmil
Crystal structure of pentameric KCTD1 BTB domain form 2
Descriptor: BTB/POZ domain-containing protein KCTD1
Authors:Ji, A.X, Chu, A, Prive, G.G.
Deposit date:2015-06-08
Release date:2015-09-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Structural Insights into KCTD Protein Assembly and Cullin3 Recognition.
J.Mol.Biol., 428, 2016
5BXB
DownloadVisualize
BU of 5bxb by Molmil
Crystal structure of pentameric KCTD1 BTB domain form 1
Descriptor: BTB/POZ domain-containing protein KCTD1
Authors:Ji, A.X, Chu, A, Prive, G.G.
Deposit date:2015-06-08
Release date:2015-09-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.171 Å)
Cite:Structural Insights into KCTD Protein Assembly and Cullin3 Recognition.
J.Mol.Biol., 428, 2016
7UYL
DownloadVisualize
BU of 7uyl by Molmil
850 Fab
Descriptor: 850 Fab Heavy Chain, 850 Fab Light Chain, GLYCEROL, ...
Authors:Kucharska, I, Prieto, K, Julien, J.P.
Deposit date:2022-05-06
Release date:2022-11-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:High-density binding to Plasmodium falciparum circumsporozoite protein repeats by inhibitory antibody elicited in mouse with human immunoglobulin repertoire.
Plos Pathog., 18, 2022
7UYM
DownloadVisualize
BU of 7uym by Molmil
850 Fab in complex with NANPNANPNANP peptide
Descriptor: 850 Fab Heavy Chain, 850 Fab Light Chain, Circumsporozoite protein, ...
Authors:Kucharska, I, Prieto, K, Julien, J.P.
Deposit date:2022-05-06
Release date:2022-11-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:High-density binding to Plasmodium falciparum circumsporozoite protein repeats by inhibitory antibody elicited in mouse with human immunoglobulin repertoire.
Plos Pathog., 18, 2022
6OJY
DownloadVisualize
BU of 6ojy by Molmil
Methylated PilT4 from Geobacter metallireducens bound to sulfate: C3ocococ conformation
Descriptor: SULFATE ION, Twitching motility pilus retraction ATPase
Authors:McCallum, M, Howell, P.L.
Deposit date:2019-04-12
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Multiple conformations facilitate PilT function in the type IV pilus.
Nat Commun, 10, 2019
6OJX
DownloadVisualize
BU of 6ojx by Molmil
PilT4 from Geobacter metallireducens bound to ATP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:McCallum, M, Howell, P.L.
Deposit date:2019-04-12
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.892 Å)
Cite:Multiple conformations facilitate PilT function in the type IV pilus.
Nat Commun, 10, 2019
6OKV
DownloadVisualize
BU of 6okv by Molmil
PilT4 from Geobacter metallireducens bound to AMP-PNP: C2ccocco conformation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:McCallum, M, Howell, P.L.
Deposit date:2019-04-15
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (4.007 Å)
Cite:Multiple conformations facilitate PilT function in the type IV pilus.
Nat Commun, 10, 2019
6OLK
DownloadVisualize
BU of 6olk by Molmil
CryoEM structure of PilT4 from Geobacter metallireducens without adding nucleotide: C3ocococ conformation
Descriptor: Twitching motility pilus retraction ATPase
Authors:McCallum, M, Howell, P.L.
Deposit date:2019-04-16
Release date:2019-11-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Multiple conformations facilitate PilT function in the type IV pilus.
Nat Commun, 10, 2019
6OLM
DownloadVisualize
BU of 6olm by Molmil
CryoEM structure of PilT4 from Geobacter metallireducens with added ATP: C6cccccc conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Twitching motility pilus retraction ATPase
Authors:McCallum, M, Howell, P.L.
Deposit date:2019-04-16
Release date:2019-11-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Multiple conformations facilitate PilT function in the type IV pilus.
Nat Commun, 10, 2019
5UFK
DownloadVisualize
BU of 5ufk by Molmil
Structure of the effector protein SidK (lpg0968) from Legionella pneumophila
Descriptor: GLYCEROL, effector protein SidK
Authors:Beyrakhova, K, Xu, C, Boniecki, M.T, Cygler, M.
Deposit date:2017-01-04
Release date:2017-05-10
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.
PLoS Pathog., 13, 2017
5UF5
DownloadVisualize
BU of 5uf5 by Molmil
Structure of the effector protein SidK (lpg0968) from Legionella pneumophila (domain-swapped dimer)
Descriptor: GLYCEROL, effector protein SidK
Authors:Beyrakhova, K, Xu, C, Boniecki, M.T, Cygler, M.
Deposit date:2017-01-03
Release date:2017-05-10
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.
PLoS Pathog., 13, 2017
5VKK
DownloadVisualize
BU of 5vkk by Molmil
Crystal structure of Fab fragment of anti-CD22 Epratuzumab
Descriptor: Epratuzumab Fab Heavy Chain, Epratuzumab Fab Light Chain
Authors:Sicard, T, Ereno-Orbea, J, Julien, J.P.
Deposit date:2017-04-21
Release date:2017-10-04
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.014 Å)
Cite:Molecular basis of human CD22 function and therapeutic targeting.
Nat Commun, 8, 2017
5VOX
DownloadVisualize
BU of 5vox by Molmil
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 1)
Descriptor: V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
Authors:Zhao, J.
Deposit date:2017-05-03
Release date:2017-06-21
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.
PLoS Pathog., 13, 2017

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon