Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2E61
DownloadVisualize
BU of 2e61 by Molmil
Solution structure of the zf-CW domain in zinc finger CW-type PWWP domain protein 1
Descriptor: ZINC ION, Zinc finger CW-type PWWP domain protein 1
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-25
Release date:2007-06-26
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural insight into the zinc finger CW domain as a histone modification reader
Structure, 18, 2010
2CU9
DownloadVisualize
BU of 2cu9 by Molmil
Crystal structure of Histone chaperone cia1
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, Histone chaperone cia1
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-25
Release date:2006-08-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Fission Yeast Histone Chaperone Asf1 Complexed with the Hip1 B-domain or the Cac2 C Terminus
J.Biol.Chem., 283, 2008
6SP7
DownloadVisualize
BU of 6sp7 by Molmil
Crystal Structure of the VIM-2 Acquired Metallo-beta-Lactamase in Complex with Taniborbactam (VNRX-5133)
Descriptor: (4~{R})-4-[2-[4-(2-azanylethylamino)cyclohexyl]ethanoylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid, ACETATE ION, Metallo-beta-lactamase VIM-2, ...
Authors:Docquier, J.D, Pozzi, C, De Luca, F, Benvenuti, M, Mangani, S.
Deposit date:2019-08-31
Release date:2020-01-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Discovery of Taniborbactam (VNRX-5133): A Broad-Spectrum Serine- and Metallo-beta-lactamase Inhibitor for Carbapenem-Resistant Bacterial Infections.
J.Med.Chem., 63, 2020
6SP6
DownloadVisualize
BU of 6sp6 by Molmil
Ultra-high Resolution Crystal Structure of the CTX-M-15 Extended-Spectrum beta-Lactamase in Complex with Taniborbactam (VNRX-5133)
Descriptor: (3~{R})-3-[2-[4-(2-azanylethylamino)cyclohexyl]ethanoylamino]-2-oxidanyl-3,4-dihydro-1,2-benzoxaborinine-8-carboxylic acid, 1,2-ETHANEDIOL, Beta-lactamase, ...
Authors:Docquier, J.D, Pozzi, C, De Luca, F, Benvenuti, M, Mangani, S.
Deposit date:2019-08-31
Release date:2020-01-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Discovery of Taniborbactam (VNRX-5133): A Broad-Spectrum Serine- and Metallo-beta-lactamase Inhibitor for Carbapenem-Resistant Bacterial Infections.
J.Med.Chem., 63, 2020
9AZY
DownloadVisualize
BU of 9azy by Molmil
Crystal structure of PDC-88 beta-lactamase
Descriptor: Beta-lactamase
Authors:Kumar, V, van den Akker, F.
Deposit date:2024-03-11
Release date:2025-03-19
Last modified:2025-07-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and mechanism of taniborbactam inhibition of the cefepime-hydrolyzing, partial R2-loop deletion Pseudomonas -derived cephalosporinase variant PDC-88.
Antimicrob.Agents Chemother., 69, 2025
9AZU
DownloadVisualize
BU of 9azu by Molmil
Crystal structure of PDC-3 beta-lactamase in complex with taniborbactam
Descriptor: (3~{R})-3-[2-[4-(2-azanylethylamino)cyclohexyl]ethanoylamino]-2-oxidanyl-3,4-dihydro-1,2-benzoxaborinine-8-carboxylic acid, Beta-lactamase
Authors:Kumar, V, van den Akker, F.
Deposit date:2024-03-11
Release date:2025-03-19
Last modified:2025-07-09
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure and mechanism of taniborbactam inhibition of the cefepime-hydrolyzing, partial R2-loop deletion Pseudomonas -derived cephalosporinase variant PDC-88.
Antimicrob.Agents Chemother., 69, 2025
9AZW
DownloadVisualize
BU of 9azw by Molmil
Crystal structure of PDC-88 beta-lactamase in complex with taniborbactam
Descriptor: (3~{R})-3-[2-[4-(2-azanylethylamino)cyclohexyl]ethanoylamino]-2-oxidanyl-3,4-dihydro-1,2-benzoxaborinine-8-carboxylic acid, Beta-lactamase
Authors:Kumar, V, van den Akker, F.
Deposit date:2024-03-11
Release date:2025-03-19
Last modified:2025-07-09
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure and mechanism of taniborbactam inhibition of the cefepime-hydrolyzing, partial R2-loop deletion Pseudomonas -derived cephalosporinase variant PDC-88.
Antimicrob.Agents Chemother., 69, 2025
2DX8
DownloadVisualize
BU of 2dx8 by Molmil
Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus
Descriptor: Pygopus homolog 1, ZINC ION
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-24
Release date:2007-05-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus
To be Published
2DW4
DownloadVisualize
BU of 2dw4 by Molmil
Crystal structure of human LSD1 at 2.3 A resolution
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1
Authors:Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-02
Release date:2007-09-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of histone demethylase LSD1 and tranylcypromine at 2.25A
Biochem.Biophys.Res.Commun., 366, 2008
3AKG
DownloadVisualize
BU of 3akg by Molmil
Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-1,5-L-arabinofuranobiose
Descriptor: CHLORIDE ION, GLYCEROL, Putative secreted alpha L-arabinofuranosidase II, ...
Authors:Fujimoto, Z, Ichinose, H, Kaneko, S.
Deposit date:2010-07-14
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of an Exo-1,5-{alpha}-L-arabinofuranosidase from Streptomyces avermitilis Provides Insights into the Mechanism of Substrate Discrimination between Exo- and Endo-type Enzymes in Glycoside Hydrolase Family 43.
J.Biol.Chem., 285, 2010
3AKH
DownloadVisualize
BU of 3akh by Molmil
Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-1,5-L-arabinofuranotriose
Descriptor: CHLORIDE ION, GLYCEROL, Putative secreted alpha L-arabinofuranosidase II, ...
Authors:Fujimoto, Z, Ichinose, H, Kaneko, S.
Deposit date:2010-07-14
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of an Exo-1,5-{alpha}-L-arabinofuranosidase from Streptomyces avermitilis Provides Insights into the Mechanism of Substrate Discrimination between Exo- and Endo-type Enzymes in Glycoside Hydrolase Family 43.
J.Biol.Chem., 285, 2010
3AKI
DownloadVisualize
BU of 3aki by Molmil
Crystal structure of exo-1,5-alpha-L-arabinofuranosidase complexed with alpha-L-arabinofuranosyl azido
Descriptor: (2R,3R,4R,5S)-2-azido-5-(hydroxymethyl)oxolane-3,4-diol, CHLORIDE ION, GLYCEROL, ...
Authors:Fujimoto, Z, Ichinose, H, Kaneko, S.
Deposit date:2010-07-14
Release date:2010-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of an Exo-1,5-{alpha}-L-arabinofuranosidase from Streptomyces avermitilis Provides Insights into the Mechanism of Substrate Discrimination between Exo- and Endo-type Enzymes in Glycoside Hydrolase Family 43.
J.Biol.Chem., 285, 2010
3AKF
DownloadVisualize
BU of 3akf by Molmil
Crystal structure of exo-1,5-alpha-L-arabinofuranosidase
Descriptor: CHLORIDE ION, GLYCEROL, Putative secreted alpha L-arabinofuranosidase II, ...
Authors:Fujimoto, Z, Ichinose, H, Kaneko, S.
Deposit date:2010-07-14
Release date:2010-08-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of an Exo-1,5-{alpha}-L-arabinofuranosidase from Streptomyces avermitilis Provides Insights into the Mechanism of Substrate Discrimination between Exo- and Endo-type Enzymes in Glycoside Hydrolase Family 43.
J.Biol.Chem., 285, 2010
2RS9
DownloadVisualize
BU of 2rs9 by Molmil
Solution structure of the bromodomain of human BRPF1 in complex with histone H4K5ac peptide
Descriptor: Acetylated lysine 5 of peptide from Histone H4, Peregrin
Authors:Qin, X, Nagashima, T, Umehara, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-12-08
Release date:2012-12-12
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Site-specific histone recognition by the bromodomain of Brpf1 and the role in MOZ/MORF histone acetyltransferase complexes
To be Published
2DVW
DownloadVisualize
BU of 2dvw by Molmil
Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Descriptor: 26S protease regulatory subunit 6B, 26S proteasome non-ATPase regulatory subunit 10
Authors:Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-01
Release date:2007-03-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Structure, 15, 2007
2DWZ
DownloadVisualize
BU of 2dwz by Molmil
Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
Descriptor: 26S protease regulatory subunit 6B, 26S proteasome non-ATPase regulatory subunit 10, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-22
Release date:2007-08-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
To be Published
2DZN
DownloadVisualize
BU of 2dzn by Molmil
Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
Descriptor: 26S protease regulatory subunit 6B homolog, Probable 26S proteasome regulatory subunit p28
Authors:Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-07-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome
Biochem.Biophys.Res.Commun., 359, 2007
2E3K
DownloadVisualize
BU of 2e3k by Molmil
Crystal structure of the human Brd2 second bromodomain in complexed with the acetylated histone H4 peptide
Descriptor: 15-mer peptide from Histone H4, Bromodomain-containing protein 2
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-11-27
Release date:2007-12-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for diacetylated histone H4 tail recognition by the second bromodomain of human BRD2
To be Published

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon