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1X68
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BU of 1x68 by Molmil
Solution structures of the C-terminal LIM domain of human FHL5 protein
Descriptor: FHL5 protein, ZINC ION
Authors:Nameki, N, Sasagawa, A, Sato, M, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-17
Release date:2005-11-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structures of the C-terminal LIM domain of human FHL5 protein
To be Published
1WTE
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BU of 1wte by Molmil
Crystal structure of type II restrcition endonuclease, EcoO109I complexed with cognate DNA
Descriptor: 5'-D(*AP*CP*CP*GP*GP*GP*CP*CP*CP*TP*GP*CP*C)-3', 5'-D(*GP*GP*CP*AP*GP*GP*GP*CP*CP*CP*GP*GP*T)-3', EcoO109IR, ...
Authors:Hashimoto, H, Shimizu, T, Imasaki, T, Kato, M, Shichijo, N, Kita, K, Sato, M.
Deposit date:2004-11-22
Release date:2004-12-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of type II restriction endonuclease EcoO109I and its complex with cognate DNA
J.Biol.Chem., 280, 2005
1WDA
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BU of 1wda by Molmil
Crystal structure of human peptidylarginine deiminase type4 (PAD4) in complex with benzoyl-L-arginine amide
Descriptor: CALCIUM ION, N-[(E)-2-AMINO-1-(3-{[AMINO(IMINO)METHYL]AMINO}PROPYL)-2-HYDROXYVINYL]BENZAMIDE, Protein-arginine deiminase type IV, ...
Authors:Arita, K, Hashimoto, H, Shimizu, T, Nakashima, K, Yamada, M, Sato, M.
Deposit date:2004-05-12
Release date:2004-07-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for Ca(2+)-induced activation of human PAD4
Nat.Struct.Mol.Biol., 11, 2004
1WTD
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BU of 1wtd by Molmil
Crystal structure of type II restrcition endonuclease, EcoO109I DNA-free form
Descriptor: EcoO109IR, GLYCEROL
Authors:Hashimoto, H, Shimizu, T, Imasaki, T, Kato, M, Shichijo, N, Kita, K, Sato, M.
Deposit date:2004-11-22
Release date:2004-12-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.401 Å)
Cite:Crystal structures of type II restriction endonuclease EcoO109I and its complex with cognate DNA
J.Biol.Chem., 280, 2005
1WD9
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BU of 1wd9 by Molmil
Calcium bound form of human peptidylarginine deiminase type4 (PAD4)
Descriptor: CALCIUM ION, Protein-arginine deiminase type IV, SULFATE ION
Authors:Arita, K, Hashimoto, H, Shimizu, T, Nakashima, K, Yamada, M, Sato, M.
Deposit date:2004-05-12
Release date:2004-07-13
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for Ca(2+)-induced activation of human PAD4
Nat.Struct.Mol.Biol., 11, 2004
1WD8
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BU of 1wd8 by Molmil
Calcium free form of human peptidylarginine deiminase type4 (PAD4)
Descriptor: Protein-arginine deiminase type IV
Authors:Arita, K, Hashimoto, H, Shimizu, T, Nakashima, K, Yamada, M, Sato, M.
Deposit date:2004-05-12
Release date:2004-07-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for Ca(2+)-induced activation of human PAD4
Nat.Struct.Mol.Biol., 11, 2004
1X2Q
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BU of 1x2q by Molmil
Solution structure of the SH3 domain of the Signal transducing adaptor molecule 2
Descriptor: Signal transducing adapter molecule 2
Authors:Chikayama, E, Kigawa, T, Sato, M, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-26
Release date:2005-10-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the SH3 domain of the Signal transducing adaptor molecule 2
To be Published
1X67
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BU of 1x67 by Molmil
Solution structure of the cofilin homology domain of HIP-55 (drebrin-like protein)
Descriptor: Drebrin-like protein
Authors:Goroncy, A.K, Kigawa, T, Koshiba, S, Sato, M, Kobayashi, N, Tochio, N, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-17
Release date:2005-11-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR solution structures of actin depolymerizing factor homology domains.
Protein Sci., 18, 2009
1X66
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BU of 1x66 by Molmil
Solution structure of the SAM_PNT-domain of the human friend LEUKEMIAINTEGRATION 1 transcription factor
Descriptor: Friend leukemia integration 1 transcription factor
Authors:Goroncy, A, Kigawa, T, Koshiba, S, Sato, M, Kobayashi, N, Tochio, N, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-17
Release date:2005-11-17
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the SAM_PNT-domain of the human friend LEUKEMIAINTEGRATION 1 transcription factor
To be Published
3VYH
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BU of 3vyh by Molmil
Crystal structure of aW116R mutant of nitrile hydratase from Pseudonocardia thermophilla
Descriptor: COBALT (II) ION, Cobalt-containing nitrile hydratase subunit alpha, Cobalt-containing nitrile hydratase subunit beta
Authors:Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M.
Deposit date:2012-09-25
Release date:2013-11-13
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
3VYG
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BU of 3vyg by Molmil
Crystal structure of Thiocyanate hydrolase mutant R136W
Descriptor: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ...
Authors:Yamanaka, Y, Sato, M, Arakawa, T, Namima, S, Hori, S, Ohtaki, A, Noguchi, K, Katayama, Y, Yohda, M, Odaka, M.
Deposit date:2012-09-25
Release date:2013-11-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
To be published
3VKX
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BU of 3vkx by Molmil
Structure of PCNA
Descriptor: 3,5,3'TRIIODOTHYRONINE, CHLORIDE ION, Proliferating cell nuclear antigen, ...
Authors:Hashimoto, H, Hishiki, A, Shimizu, T, Sato, M, Punchihewa, C, Connelly, M, Actis, M, Waddell, B, Pagala, V, Fujii, N.
Deposit date:2011-11-26
Release date:2012-03-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification of small molecule proliferating cell nuclear antigen (PCNA) inhibitor that disrupts interactions with PIP-box proteins and inhibits DNA replication
J.Biol.Chem., 287, 2012
3VIR
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BU of 3vir by Molmil
Crystal strcture of Swi5 from fission yeast
Descriptor: Mating-type switching protein swi5, octyl beta-D-glucopyranoside
Authors:Kuwabara, N, Yamada, N, Hashimoto, H, Sato, M, Iwasaki, H, Shimizu, T.
Deposit date:2011-10-06
Release date:2012-08-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
3VIQ
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BU of 3viq by Molmil
Crystal structure of Swi5-Sfr1 complex from fission yeast
Descriptor: GLYCEROL, Mating-type switching protein swi5, NITRATE ION, ...
Authors:Kuwabara, N, Murayama, Y, Hashimoto, H, Kokabu, Y, Ikeguchi, M, Sato, M, Mayanagi, K, Tsutsui, Y, Iwasaki, H, Shimizu, T.
Deposit date:2011-10-06
Release date:2012-08-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
3AUP
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BU of 3aup by Molmil
Crystal structure of Basic 7S globulin from soybean
Descriptor: Basic 7S globulin
Authors:Yoshizawa, T, Shimizu, T, Taichi, M, Nishiuchi, Y, Yamabe, M, Shichijo, N, Unzai, S, Hirano, H, Sato, M, Hashimoto, H.
Deposit date:2011-02-14
Release date:2011-04-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of basic 7S globulin, a xyloglucan-specific endo-beta-1,4-glucanase inhibitor protein-like protein from soybean lacking inhibitory activity against endo-beta-glucanase
Febs J., 278, 2011
2ZFD
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BU of 2zfd by Molmil
The crystal structure of plant specific calcium binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14
Descriptor: ACETIC ACID, CALCIUM ION, Calcineurin B-like protein 2, ...
Authors:Akaboshi, M, Hashimoto, H, Ishida, H, Koizumi, N, Sato, M, Shimizu, T.
Deposit date:2007-12-29
Release date:2008-02-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14
J.Mol.Biol., 377, 2008
2DO6
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BU of 2do6 by Molmil
Solution structure of RSGI RUH-065, a UBA domain from human cDNA
Descriptor: E3 ubiquitin-protein ligase CBL-B
Authors:Hamada, T, Hirota, H, Lin, Y.-J, Guntert, P, Sato, M, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-27
Release date:2007-05-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of RSGI RUH-065, a UBA domain from human cDNA
To be Published
3A57
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BU of 3a57 by Molmil
Crystal structure of Thermostable Direct Hemolysin
Descriptor: Thermostable direct hemolysin 2
Authors:Hashimoto, H, Yanagihara, I, Nakahira, K, Hamada, D, Ikegami, T, Mayanagi, K, Kaieda, S, Fukui, T, Ohnishi, K, Kajiyama, S, Yamane, T, Ikeguchi, M, Honda, T, Shimizu, T, Sato, M.
Deposit date:2009-08-03
Release date:2010-03-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem., 285, 2010
3VL8
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BU of 3vl8 by Molmil
Crystal structure of XEG
Descriptor: SULFATE ION, Xyloglucan-specific endo-beta-1,4-glucanase A
Authors:Yoshizawa, T, Shimizu, T, Hirano, H, Sato, M, Hashimoto, H.
Deposit date:2011-11-30
Release date:2012-04-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for inhibition of xyloglucan-specific endo-beta-1,4-glucanase (XEG) by XEG-protein inhibitor
J.Biol.Chem., 287, 2012
2Z5M
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BU of 2z5m by Molmil
Complex of Transportin 1 with TAP NLS, crystal form 2
Descriptor: Nuclear RNA export factor 1, Transportin-1
Authors:Imasaki, T, Shimizu, T, Hashimoto, H, Hidaka, Y, Kose, S, Imamoto, N, Yamada, M, Sato, M.
Deposit date:2007-07-14
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for substrate recognition and dissociation by human transportin 1
Mol.Cell, 28, 2007
3APN
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BU of 3apn by Molmil
Crystal structure of the human wild-type PAD4 protein
Descriptor: Protein-arginine deiminase type-4
Authors:Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
Deposit date:2010-10-19
Release date:2011-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
2Z5O
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BU of 2z5o by Molmil
Complex of Transportin 1 with JKTBP NLS
Descriptor: Heterogeneous nuclear ribonucleoprotein D-like, Transportin-1
Authors:Imasaki, T, Shimizu, T, Hashimoto, H, Hidaka, Y, Kose, S, Imamoto, N, Yamada, M, Sato, M.
Deposit date:2007-07-14
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for substrate recognition and dissociation by human transportin 1
Mol.Cell, 28, 2007
2Z5K
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BU of 2z5k by Molmil
Complex of Transportin 1 with TAP NLS
Descriptor: Nuclear RNA export factor 1, PHOSPHATE ION, Transportin-1
Authors:Imasaki, T, Shimizu, T, Hashimoto, H, Hidaka, Y, Yamada, M, Kose, S, Imamoto, N, Sato, M.
Deposit date:2007-07-14
Release date:2007-10-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for substrate recognition and dissociation by human transportin 1
Mol.Cell, 28, 2007
3APM
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BU of 3apm by Molmil
Crystal structure of the human SNP PAD4 protein
Descriptor: Protein-arginine deiminase type-4
Authors:Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
Deposit date:2010-10-19
Release date:2011-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
3VL9
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Crystal structure of xeg-xyloglucan
Descriptor: Xyloglucan-specific endo-beta-1,4-glucanase A, beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Yoshizawa, T, Shimizu, T, Hirano, H, Sato, M, Hashimoto, H.
Deposit date:2011-11-30
Release date:2012-04-18
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis for inhibition of xyloglucan-specific endo-beta-1,4-glucanase (XEG) by XEG-protein inhibitor
J.Biol.Chem., 287, 2012

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