8H1B
 
 | | Crystal structure of MnmM from S. aureus complexed with SAM and tRNA anti-codon stem loop (ASL) (1.55 A) | | Descriptor: | RNA (5'-R(*AP*CP*GP*GP*AP*CP*UP*UP*UP*GP*AP*CP*UP*CP*CP*GP*U)-3'), S-ADENOSYLMETHIONINE, SODIUM ION, ... | | Authors: | Kim, J, Cho, G, Lee, J. | | Deposit date: | 2022-10-01 | | Release date: | 2023-01-25 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (1.55 Å) | | Cite: | Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
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6KNR
 | | Crystal structure of Estrogen-related receptor gamma ligand-binding domain with DN200699 | | Descriptor: | (E)-4-(1-(4-(1-cyclopropylpiperidin-4-yl)phenyl)-5-hydroxy-2-phenylpent-1-en-1-yl)phenol, Estrogen-related receptor gamma | | Authors: | Yoon, H, Kim, J, Chin, J, Song, J, Cho, S.J. | | Deposit date: | 2019-08-07 | | Release date: | 2020-08-12 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.804 Å) | | Cite: | An orally available inverse agonist of estrogen-related receptor gamma showed expanded efficacy for the radioiodine therapy of poorly differentiated thyroid cancer.
Eur.J.Med.Chem., 205, 2020
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8YR6
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8YR5
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8YS9
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5GHG
 | | Transaminase W58L with SMBA | | Descriptor: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Aminotransferase class-III | | Authors: | Kim, J, Park, J. | | Deposit date: | 2016-06-20 | | Release date: | 2017-05-24 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Active Site Engineering of omega-Transaminase Guided by Docking Orientation Analysis and Virtual Activity Screening
Acs Catalysis, 7, 2017
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5GHF
 | | Transaminase with L-ala | | Descriptor: | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Aminotransferase class-III | | Authors: | Kim, J, Park, J. | | Deposit date: | 2016-06-19 | | Release date: | 2017-05-24 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Active Site Engineering of omega-Transaminase Guided by Docking Orientation Analysis and Virtual Activity Screening
Acs Catalysis, 7, 2017
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7WJP
 | | Structure of PadR-like protein from Listeria monocytogenes | | Descriptor: | PadR family transcriptional regulator | | Authors: | Hong, M, Kim, J. | | Deposit date: | 2022-01-07 | | Release date: | 2022-04-20 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.25 Å) | | Cite: | Structure-based molecular characterization of the LltR transcription factor from Listeria monocytogenes.
Biochem.Biophys.Res.Commun., 600, 2022
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1Z3A
 | | Crystal structure of tRNA adenosine deaminase TadA from Escherichia coli | | Descriptor: | ZINC ION, tRNA-specific adenosine deaminase | | Authors: | Malashkevich, V, Kim, J, Lisbin, M, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) | | Deposit date: | 2005-03-10 | | Release date: | 2006-02-21 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.03 Å) | | Cite: | Structural and kinetic characterization of Escherichia coli TadA, the wobble-specific tRNA deaminase.
Biochemistry, 45, 2006
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6JCM
 | | Crystal structure of ligand-free Rv0187. | | Descriptor: | ACETATE ION, Probable O-methyltransferase | | Authors: | Kim, J, Lee, S. | | Deposit date: | 2019-01-29 | | Release date: | 2019-12-11 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.08 Å) | | Cite: | Structural and biochemical characterization of Rv0187, an O-methyltransferase from Mycobacterium tuberculosis.
Sci Rep, 9, 2019
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6JCL
 | | Crystal structure of cofactor-bound Rv0187 from MTB | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Probable O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE, ... | | Authors: | Kim, J, Lee, S. | | Deposit date: | 2019-01-29 | | Release date: | 2019-12-11 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.644 Å) | | Cite: | Structural and biochemical characterization of Rv0187, an O-methyltransferase from Mycobacterium tuberculosis.
Sci Rep, 9, 2019
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4GRA
 | | Crystal structure of SULT1A1 bound with PAP | | Descriptor: | ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase 1A1 | | Authors: | Kim, J, Cook, I, Wang, T, Falany, C.N, Leyh, T.S, Almo, S.C. | | Deposit date: | 2012-08-24 | | Release date: | 2013-01-16 | | Last modified: | 2023-09-13 | | Method: | X-RAY DIFFRACTION (2.56 Å) | | Cite: | The gate that governs sulfotransferase selectivity.
Biochemistry, 52, 2013
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7BWH
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7CT8
 | | Crystal structure of apo CmoB from Vibrio Vulnificus | | Descriptor: | tRNA U34 carboxymethyltransferase | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CT9
 | | Crystal structure of SAH bound CmoB from Vibrio Vulnificus | | Descriptor: | MALONATE ION, PHOSPHATE ION, S-ADENOSYL-L-HOMOCYSTEINE, ... | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CTA
 | | Crystal structure of Cx-SAM bound CmoB from Vibrio vulnificus | | Descriptor: | (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate, SULFATE ION, tRNA U34 carboxymethyltransferase | | Authors: | Kim, J, Jeong, S. | | Deposit date: | 2020-08-18 | | Release date: | 2021-03-03 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Structural snapshots of CmoB in various states during wobble uridine modification of tRNA.
Biochem.Biophys.Res.Commun., 534, 2021
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7CNX
 | | Crystal structure of Apo PSD from E. coli (2.63 A) | | Descriptor: | Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.63 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNY
 | | Crystal structure of 8PE bound PSD from E. coli (2.12 A) | | Descriptor: | 1,2-Dioctanoyl-SN-Glycero-3-Phosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (2.12 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNZ
 | | Crystal structure of 10PE bound PSD from E. coli (2.70 A) | | Descriptor: | 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, PHOSPHATE ION, Phosphatidylserine decarboxylase alpha chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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7CNW
 | | Crystal structure of Apo PSD from E. coli (1.90 A) | | Descriptor: | DODECYL-BETA-D-MALTOSIDE, Phosphatidylserine decarboxylase alpha chain, Phosphatidylserine decarboxylase beta chain, ... | | Authors: | Kim, J, Cho, G. | | Deposit date: | 2020-08-03 | | Release date: | 2021-03-24 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis.
Sci Rep, 11, 2021
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5ZW3
 | | Crystal Structure of TrmR from B. subtilis | | Descriptor: | MAGNESIUM ION, Putative O-methyltransferase YrrM, S-ADENOSYL-L-HOMOCYSTEINE | | Authors: | Kim, J, Ryu, H, Almo, S.C. | | Deposit date: | 2018-05-14 | | Release date: | 2018-07-11 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.27 Å) | | Cite: | Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.
Nucleic Acids Res., 46, 2018
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5ZW4
 | | Crystal structure of tRNA bound TrmR | | Descriptor: | PHOSPHATE ION, Putative O-methyltransferase YrrM, RNA (5'-R(*CP*CP*UP*GP*CP*UP*UP*UP*GP*CP*AP*CP*GP*CP*AP*GP*G)-3'), ... | | Authors: | Kim, J, Ryu, H, Almo, S.C. | | Deposit date: | 2018-05-14 | | Release date: | 2018-07-11 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine.
Nucleic Acids Res., 46, 2018
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8HTI
 | | Human Consensus Olfactory Receptor OR52c in Complex with Octanoic Acid (OCA) and G Protein | | Descriptor: | Consensus Olfactory Receptor OR52c, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... | | Authors: | Choi, C.W, Bae, J, Choi, H.-J, Kim, J. | | Deposit date: | 2022-12-21 | | Release date: | 2023-12-20 | | Last modified: | 2024-11-06 | | Method: | ELECTRON MICROSCOPY (2.97 Å) | | Cite: | Understanding the molecular mechanisms of odorant binding and activation of the human OR52 family.
Nat Commun, 14, 2023
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8ZG2
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8ZG3
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