Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8GTA
DownloadVisualize
BU of 8gta by Molmil
Cryo-EM structure of the marine siphophage vB_Dshs-R4C capsid
Descriptor: Major capsid protein
Authors:Sun, H, Huang, Y, Zheng, Q, Li, S, Zhang, R, Xia, N.
Deposit date:2022-09-07
Release date:2023-07-12
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (3.63 Å)
Cite:Structure and proposed DNA delivery mechanism of a marine roseophage.
Nat Commun, 14, 2023
8GTB
DownloadVisualize
BU of 8gtb by Molmil
Cryo-EM structure of the marine siphophage vB_DshS-R4C tail tube protein
Descriptor: Major tail protein
Authors:Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N.
Deposit date:2022-09-08
Release date:2023-07-12
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Structure and proposed DNA delivery mechanism of a marine roseophage.
Nat Commun, 14, 2023
8GTC
DownloadVisualize
BU of 8gtc by Molmil
Cryo-EM model of the marine siphophage vB_DshS-R4C baseplate-tail complex
Descriptor: Distal tail protein, Hub protein, Major tail protein, ...
Authors:Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N.
Deposit date:2022-09-08
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structure and proposed DNA delivery mechanism of a marine roseophage.
Nat Commun, 14, 2023
8GTF
DownloadVisualize
BU of 8gtf by Molmil
Cryo-EM model of the marine siphophage vB_DshS-R4C stopper-terminator complex
Descriptor: Head-to-tail joining protein, Major tail protein, Terminator protein
Authors:Huang, Y, Sun, H, Wei, S, Zheng, Q, Li, S, Zhang, R, Xia, N.
Deposit date:2022-09-08
Release date:2023-07-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structure and proposed DNA delivery mechanism of a marine roseophage.
Nat Commun, 14, 2023
8JRE
DownloadVisualize
BU of 8jre by Molmil
Cryo-EM structure of a designed AAV8-based vector
Descriptor: Capsid protein
Authors:Ke, X, Luo, S, Zheng, Q, Jiang, H, Liu, F, Sun, X.
Deposit date:2023-06-16
Release date:2024-04-24
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (2.08 Å)
Cite:An adeno-associated virus variant enabling efficient ocular-directed gene delivery across species.
Nat Commun, 15, 2024
7DQ4
DownloadVisualize
BU of 7dq4 by Molmil
Cryo-EM structure of CAR triggered Coxsackievirus B1 A-particle
Descriptor: VP2, VP3, Virion protein 1
Authors:Li, S, Zhu, R, Xu, L, Cheng, T, Zheng, Q.
Deposit date:2020-12-22
Release date:2021-05-05
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures reveal the molecular basis of receptor-initiated coxsackievirus uncoating.
Cell Host Microbe, 29, 2021
7DPZ
DownloadVisualize
BU of 7dpz by Molmil
Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR
Descriptor: Capsid protein VP4, Coxsackievirus and adenovirus receptor, VP2, ...
Authors:Li, S, Zhu, R, Xu, L, Cheng, T, Zheng, Q.
Deposit date:2020-12-22
Release date:2021-05-05
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures reveal the molecular basis of receptor-initiated coxsackievirus uncoating.
Cell Host Microbe, 29, 2021
7DQ1
DownloadVisualize
BU of 7dq1 by Molmil
Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR at physiological temperature
Descriptor: Capsid protein VP4, Coxsackievirus and adenovirus receptor, VP2, ...
Authors:Li, S, Zhu, R, Xu, L, Cheng, T, Zheng, Q.
Deposit date:2020-12-22
Release date:2021-05-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures reveal the molecular basis of receptor-initiated coxsackievirus uncoating.
Cell Host Microbe, 29, 2021
7DPG
DownloadVisualize
BU of 7dpg by Molmil
Cryo-EM structure of Coxsackievirus B1 empty particle
Descriptor: VP2, VP3, Virion protein 1
Authors:Li, S, Zhu, R, Xu, L, Cheng, T, Zheng, Q, Xia, N.
Deposit date:2020-12-18
Release date:2021-05-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures reveal the molecular basis of receptor-initiated coxsackievirus uncoating.
Cell Host Microbe, 29, 2021
7DQ7
DownloadVisualize
BU of 7dq7 by Molmil
Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 5F5
Descriptor: 5F5 VH, 5F5 VL, Capsid protein VP4, ...
Authors:Li, S, Zhu, R, Xu, L, Cheng, T, Zheng, Q.
Deposit date:2020-12-22
Release date:2021-05-05
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structures reveal the molecular basis of receptor-initiated coxsackievirus uncoating.
Cell Host Microbe, 29, 2021
8X96
DownloadVisualize
BU of 8x96 by Molmil
Cryo-EM structure of enterovirus A71 A-particle in complex with Fab h1A6.2
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Jiang, Y, Huang, Y, Zhu, R, Zheng, Q, Li, S, Xia, N.
Deposit date:2023-11-29
Release date:2024-09-04
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2.
Nat Microbiol, 9, 2024
8X9B
DownloadVisualize
BU of 8x9b by Molmil
Cryo-EM structure of coxsackievirus A16 empty particle in complex with Fab h1A6.2 (local refinement)
Descriptor: Capsid protein VP1, Genome polyprotein, The heavy chain of Fab h1A6.2, ...
Authors:Jiang, Y, Huang, Y, Zhu, R, Zheng, Q, Li, S, Xia, N.
Deposit date:2023-11-29
Release date:2024-09-04
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.82 Å)
Cite:Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2.
Nat Microbiol, 9, 2024
8X98
DownloadVisualize
BU of 8x98 by Molmil
Cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab h1A6.2
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Jiang, Y, Huang, Y, Zhu, R, Zheng, Q, Li, S, Xia, N.
Deposit date:2023-11-29
Release date:2024-09-04
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.69 Å)
Cite:Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2.
Nat Microbiol, 9, 2024
8X99
DownloadVisualize
BU of 8x99 by Molmil
Cryo-EM structure of coxsackievirus A16 A-particle in complex with Fab h1A6.2
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Jiang, Y, Huang, Y, Zhu, R, Zheng, Q, Li, S, Xia, N.
Deposit date:2023-11-29
Release date:2024-09-04
Last modified:2025-01-15
Method:ELECTRON MICROSCOPY (3.38 Å)
Cite:Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2.
Nat Microbiol, 9, 2024
8X95
DownloadVisualize
BU of 8x95 by Molmil
Cryo-EM structure of enterovirus A71 mature virion in complex with Fab h1A6.2
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Jiang, Y, Huang, Y, Zhu, R, Zheng, Q, Li, S, Xia, N.
Deposit date:2023-11-29
Release date:2024-09-04
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2.
Nat Microbiol, 9, 2024
8X9A
DownloadVisualize
BU of 8x9a by Molmil
Cryo-EM structure of coxsackievirus A16 empty particle in complex with Fab h1A6.2
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Jiang, Y, Huang, Y, Zhu, R, Zheng, Q, Li, S, Xia, N.
Deposit date:2023-11-29
Release date:2024-09-04
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2.
Nat Microbiol, 9, 2024
8X97
DownloadVisualize
BU of 8x97 by Molmil
Cryo-EM structure of enterovirus A71 empty particle in complex with Fab h1A6.2
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Jiang, Y, Huang, Y, Zhu, R, Zheng, Q, Li, S.
Deposit date:2023-11-29
Release date:2024-09-04
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2.
Nat Microbiol, 9, 2024
8YGS
DownloadVisualize
BU of 8ygs by Molmil
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13
Descriptor: Antibody 7H13 heavy chain, Antibody 7H13 light chain, Outer capsid protein VP4
Authors:Huang, Y, Sun, H, Zheng, Q, Li, S, Ge, S, Xia, N.
Deposit date:2024-02-26
Release date:2025-02-12
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:A single residue switch mediates the broad neutralization of Rotaviruses.
Nat Commun, 16, 2025
8YGR
DownloadVisualize
BU of 8ygr by Molmil
Cryo-EM structure of partial VP4 from simian rotavirus SA11
Descriptor: Outer capsid protein VP4
Authors:Huang, Y, Sun, H, Zheng, Q, Li, S, Ge, S, Xia, N.
Deposit date:2024-02-26
Release date:2025-02-12
Method:ELECTRON MICROSCOPY (3.84 Å)
Cite:A single residue switch mediates the broad neutralization of Rotaviruses.
Nat Commun, 16, 2025
8YGT
DownloadVisualize
BU of 8ygt by Molmil
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (left side)
Descriptor: Antibody 7H13-I54G mutant heavy chain, Antibody 7H13-I54G mutant light chain, Outer capsid protein VP4
Authors:Huang, Y, Sun, H, Zheng, Q, Li, S, Ge, S, Xia, N.
Deposit date:2024-02-27
Release date:2025-02-12
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:A single residue switch mediates the broad neutralization of Rotaviruses.
Nat Commun, 16, 2025
8YGU
DownloadVisualize
BU of 8ygu by Molmil
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (right side)
Descriptor: Antibody 7H13-I54G mutant heavy chain, Antibody 7H13-I54G mutant light chain, Outer capsid protein VP4
Authors:Huang, Y, Sun, H, Zheng, Q, Li, S, Ge, S, Xia, N.
Deposit date:2024-02-27
Release date:2025-02-12
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:A single residue switch mediates the broad neutralization of Rotaviruses.
Nat Commun, 16, 2025
8YZ2
DownloadVisualize
BU of 8yz2 by Molmil
Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with magnesium solutions
Descriptor: (21R,24R,27S)-24,27,28-trihydroxy-18,24-dioxo-19,23,25-trioxa-24lambda~5~-phosphaoctacosan-21-yl (9Z)-octadec-9-enoate, (4~{E},16~{E},26~{E})-2-methoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-4,6,8,10,12,14,16,18,20,22,26,30-dodecaen-3-one, Antenna pigment protein alpha chain, ...
Authors:Chen, J.H, Zheng, Q, Zhang, X.
Deposit date:2024-04-05
Release date:2025-04-02
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Cryo-EM Analysis of a Tri-Heme Cytochrome-Associated RC-LH1 Complex from the Marine Photoheterotrophic Bacterium Dinoroseobacter Shibae.
Adv Sci, 12, 2025
8YY9
DownloadVisualize
BU of 8yy9 by Molmil
Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with magnesium-free solutions.
Descriptor: (21R,24R,27S)-24,27,28-trihydroxy-18,24-dioxo-19,23,25-trioxa-24lambda~5~-phosphaoctacosan-21-yl (9Z)-octadec-9-enoate, (4~{E},16~{E},26~{E})-2-methoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-4,6,8,10,12,14,16,18,20,22,26,30-dodecaen-3-one, Antenna pigment protein alpha chain, ...
Authors:Chen, J.H, Zheng, Q, Zhang, X.
Deposit date:2024-04-03
Release date:2025-04-02
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM Analysis of a Tri-Heme Cytochrome-Associated RC-LH1 Complex from the Marine Photoheterotrophic Bacterium Dinoroseobacter Shibae.
Adv Sci, 12, 2025
8XFF
DownloadVisualize
BU of 8xff by Molmil
Cryo-EM structure of defence-associatedsirtuin 2 (DSR2) H171A protein in complex with SPR phage tail tube protein
Descriptor: DSR2(H171A), SPR tail tube protein
Authors:Li, Y, Zhang, H, Zheng, Q, Wu, Y, Li, S.
Deposit date:2023-12-13
Release date:2024-10-23
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Structural insights into activation mechanisms on NADase of the bacterial DSR2 anti-phage defense system.
Sci Adv, 10, 2024
8YTJ
DownloadVisualize
BU of 8ytj by Molmil
Cryo-EM structure of enterovirus A71 mature virion
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ...
Authors:Jiang, Y, Huang, Y, Zhu, R, Zheng, Q, Li, S, Xia, N.
Deposit date:2024-03-26
Release date:2024-09-04
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2.
Nat Microbiol, 9, 2024

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon